Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Rhog-201ENSMUST00000098230 1269 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Rnf40Q3U319 Marveld3-201ENSMUST00000001722 1330 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Rnf40Q3U319 AC119177.1-201ENSMUST00000227647 1332 ntBASIC14.29□□□□□ -0.12
Rnf40Q3U319 Tbc1d9b-201ENSMUST00000093138 4407 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
Rnf40Q3U319 Msantd3-201ENSMUST00000061135 1589 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Rnf40Q3U319 Smtnl1-201ENSMUST00000028471 1761 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Rnf40Q3U319 Gm15082-201ENSMUST00000147045 1960 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Rnf40Q3U319 Gm28729-201ENSMUST00000190704 1964 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
Rnf40Q3U319 Rnf214-201ENSMUST00000058720 3964 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
Rnf40Q3U319 Gm3739-201ENSMUST00000165744 2011 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
Rnf40Q3U319 Auts2-208ENSMUST00000161374 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Rnf40Q3U319 Gm26651-201ENSMUST00000181851 2325 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Rnf40Q3U319 Aqr-201ENSMUST00000043160 4888 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
Rnf40Q3U319 Dync1i1-204ENSMUST00000115559 2599 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
Rnf40Q3U319 Ints13-201ENSMUST00000032427 3059 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Rnf40Q3U319 Ret-201ENSMUST00000032201 5456 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
Rnf40Q3U319 Dab2ip-204ENSMUST00000112983 6051 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Rnf40Q3U319 Nup62cl-201ENSMUST00000101212 1996 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Rnf40Q3U319 Mef2b-203ENSMUST00000110143 1312 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Rnf40Q3U319 Gm5385-201ENSMUST00000118988 1559 ntBASIC14.28□□□□□ -0.12
Rnf40Q3U319 Pgam1-ps1-201ENSMUST00000119107 749 ntBASIC14.28□□□□□ -0.12
Rnf40Q3U319 Hhatl-202ENSMUST00000163981 1744 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Rnf40Q3U319 4930556N13Rik-201ENSMUST00000173677 1034 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Rnf40Q3U319 Flot1-209ENSMUST00000174080 1383 ntTSL 5 BASIC14.28□□□□□ -0.12
Rnf40Q3U319 Gm20036-201ENSMUST00000177547 844 ntTSL 3 BASIC14.28□□□□□ -0.12
Rnf40Q3U319 Gm29107-201ENSMUST00000190910 347 ntBASIC14.28□□□□□ -0.12
Rnf40Q3U319 4930442P19Rik-201ENSMUST00000193163 1240 ntBASIC14.28□□□□□ -0.12
Rnf40Q3U319 Gm26646-202ENSMUST00000205705 439 ntTSL 5 BASIC14.28□□□□□ -0.12
Rnf40Q3U319 Gm17435-202ENSMUST00000212699 1998 ntBASIC14.28□□□□□ -0.12
Rnf40Q3U319 Cdcp2-202ENSMUST00000221740 1623 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
Rnf40Q3U319 Syt7-205ENSMUST00000224135 1557 ntBASIC14.28□□□□□ -0.12
Rnf40Q3U319 Rspo2-203ENSMUST00000226810 3091 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
Rnf40Q3U319 Rfc4-201ENSMUST00000023598 1228 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Rnf40Q3U319 Trim15-201ENSMUST00000025329 1843 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
Rnf40Q3U319 Tepsin-201ENSMUST00000026442 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Rnf40Q3U319 Slc26a5-201ENSMUST00000030878 2962 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Rnf40Q3U319 Cfap69-201ENSMUST00000054865 4956 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Rnf40Q3U319 Lce1i-201ENSMUST00000090866 731 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Rnf40Q3U319 P4ha2-202ENSMUST00000093107 2263 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Rnf40Q3U319 Sv2b-202ENSMUST00000165175 5524 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Rnf40Q3U319 Kcnt1-204ENSMUST00000114176 4166 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
Rnf40Q3U319 Ptpn9-201ENSMUST00000034832 4101 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Rnf40Q3U319 Map2k4-201ENSMUST00000046963 3695 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Rnf40Q3U319 Itga2b-201ENSMUST00000103086 3437 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Rnf40Q3U319 Eif4g3-204ENSMUST00000105830 3252 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Rnf40Q3U319 Tex10-201ENSMUST00000030030 3102 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Rnf40Q3U319 Pold3-201ENSMUST00000032969 3069 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Rnf40Q3U319 Tlk2-209ENSMUST00000145048 2776 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Rnf40Q3U319 Hnrnpk-232ENSMUST00000225674 2704 ntBASIC14.28□□□□□ -0.12
Rnf40Q3U319 4933427G23Rik-201ENSMUST00000122963 2515 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Rnf40Q3U319 Tcf4-204ENSMUST00000114978 2437 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Rnf40Q3U319 Acin1-219ENSMUST00000148754 2373 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.12
Rnf40Q3U319 Epb41l2-201ENSMUST00000053748 4385 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Rnf40Q3U319 Clcn3-201ENSMUST00000004430 4175 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Rnf40Q3U319 1600020E01Rik-206ENSMUST00000204663 2007 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Rnf40Q3U319 Ccdc134-201ENSMUST00000089174 2043 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Rnf40Q3U319 Rnf19b-202ENSMUST00000097874 1992 ntTSL 5 BASIC14.27□□□□□ -0.12
Rnf40Q3U319 Def8-203ENSMUST00000093049 1909 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Rnf40Q3U319 Creb3-201ENSMUST00000102944 1884 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Rnf40Q3U319 Eif4enif1-213ENSMUST00000179770 3676 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Rnf40Q3U319 Neu2-204ENSMUST00000165109 1824 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
Rnf40Q3U319 Zbtb25-204ENSMUST00000176278 1672 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Rnf40Q3U319 B230319C09Rik-201ENSMUST00000063376 1689 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Rnf40Q3U319 Dao-203ENSMUST00000161610 1633 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Rnf40Q3U319 Sgk1-204ENSMUST00000120509 3096 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Rnf40Q3U319 Asb10-202ENSMUST00000117900 1432 ntTSL 5 BASIC14.27□□□□□ -0.12
Rnf40Q3U319 Ak4-201ENSMUST00000102780 4186 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
Rnf40Q3U319 Dscc1-201ENSMUST00000023059 1324 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Rnf40Q3U319 Kif1c-204ENSMUST00000137119 6596 ntAPPRIS P2 TSL 5 BASIC14.27□□□□□ -0.13
Rnf40Q3U319 Gmnn-202ENSMUST00000110382 963 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Rnf40Q3U319 Aicda-202ENSMUST00000160685 1292 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Rnf40Q3U319 Dusp13-208ENSMUST00000183698 1019 ntTSL 5 BASIC14.27□□□□□ -0.13
Rnf40Q3U319 4930412E21Rik-201ENSMUST00000194267 778 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Rnf40Q3U319 Gm45098-201ENSMUST00000207179 657 ntBASIC14.27□□□□□ -0.13
Rnf40Q3U319 AC153556.1-201ENSMUST00000215135 794 ntTSL 5 BASIC14.27□□□□□ -0.13
Rnf40Q3U319 Gm7787-201ENSMUST00000216858 688 ntBASIC14.27□□□□□ -0.13
Rnf40Q3U319 Gm35154-202ENSMUST00000217008 1093 ntTSL 5 BASIC14.27□□□□□ -0.13
Rnf40Q3U319 AC130711.1-201ENSMUST00000224277 906 ntAPPRIS P1 BASIC14.27□□□□□ -0.13
Rnf40Q3U319 Thoc7-201ENSMUST00000065865 937 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Rnf40Q3U319 2310039H08Rik-201ENSMUST00000071430 773 ntAPPRIS P1 BASIC14.27□□□□□ -0.13
Rnf40Q3U319 Haus7-202ENSMUST00000077243 1032 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Rnf40Q3U319 Sdhc-201ENSMUST00000081560 815 ntTSL 3 BASIC14.27□□□□□ -0.13
Rnf40Q3U319 Gm10478-201ENSMUST00000084451 396 ntBASIC14.27□□□□□ -0.13
Rnf40Q3U319 1700128E19Rik-201ENSMUST00000134409 2439 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Rnf40Q3U319 Rasl12-201ENSMUST00000085453 2390 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Rnf40Q3U319 Bcl2l2-201ENSMUST00000022806 3509 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Rnf40Q3U319 Dmbx1-201ENSMUST00000064806 5799 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Rnf40Q3U319 Sertad2-203ENSMUST00000109586 5515 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Rnf40Q3U319 Olfr279-202ENSMUST00000205772 5330 ntAPPRIS P1 TSL 3 BASIC14.27□□□□□ -0.13
Rnf40Q3U319 Kmt5b-207ENSMUST00000113974 4150 ntAPPRIS P3 TSL 5 BASIC14.27□□□□□ -0.13
Rnf40Q3U319 AC122228.1-201ENSMUST00000223113 2057 ntTSL 5 BASIC14.27□□□□□ -0.13
Rnf40Q3U319 Pip5k1c-201ENSMUST00000045469 4323 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Rnf40Q3U319 Abhd14b-201ENSMUST00000048527 1745 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Rnf40Q3U319 Fig4-201ENSMUST00000043814 3282 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Rnf40Q3U319 Shank2-203ENSMUST00000105902 8988 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
Rnf40Q3U319 Evc2-201ENSMUST00000056365 4091 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Rnf40Q3U319 Tmem181b-ps-203ENSMUST00000188746 1626 ntTSL 5 BASIC14.26□□□□□ -0.13
Rnf40Q3U319 Cux2-202ENSMUST00000111752 8784 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Rnf40Q3U319 Smg7-203ENSMUST00000111836 3928 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Rnf40Q3U319 Slc12a4-201ENSMUST00000034370 3811 ntAPPRIS ALT1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 37.3 ms