Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Litaf-201ENSMUST00000023143 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Scn11aQ9R053 Gjb5-201ENSMUST00000046498 1721 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Scn11aQ9R053 Neurog3-201ENSMUST00000050103 1540 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Scn11aQ9R053 Chn1-203ENSMUST00000112024 4050 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Scn11aQ9R053 Chn1-210ENSMUST00000180045 4050 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Scn11aQ9R053 Csk-209ENSMUST00000217314 2162 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Scn11aQ9R053 AC154725.1-201ENSMUST00000224826 1961 ntBASIC16.02■□□□□ 0.16
Scn11aQ9R053 Dnm1-205ENSMUST00000113365 3257 ntAPPRIS ALT1 TSL 5 BASIC16.02■□□□□ 0.16
Scn11aQ9R053 Igbp1b-201ENSMUST00000054786 1456 ntAPPRIS P1 BASIC16.02■□□□□ 0.16
Scn11aQ9R053 Ssfa2-203ENSMUST00000111788 4976 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
Scn11aQ9R053 Patz1-201ENSMUST00000057089 3118 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
Scn11aQ9R053 Tjap1-203ENSMUST00000180283 2368 ntAPPRIS P2 TSL 5 BASIC16.02■□□□□ 0.15
Scn11aQ9R053 Gm44127-201ENSMUST00000203565 291 ntTSL 3 BASIC16.02■□□□□ 0.15
Scn11aQ9R053 Osbpl10-204ENSMUST00000182384 2158 ntTSL 5 BASIC16.02■□□□□ 0.15
Scn11aQ9R053 Spef1-202ENSMUST00000110218 2600 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Scn11aQ9R053 Abl1-201ENSMUST00000028190 5794 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.15
Scn11aQ9R053 Irx3os-201ENSMUST00000062522 2988 ntTSL 5 BASIC16.02■□□□□ 0.15
Scn11aQ9R053 Arid1a-202ENSMUST00000105897 8175 ntAPPRIS P2 TSL 5 BASIC16.02■□□□□ 0.15
Scn11aQ9R053 Riox2-203ENSMUST00000120674 1753 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
Scn11aQ9R053 Tcf3-205ENSMUST00000105341 2451 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.15
Scn11aQ9R053 Coil-202ENSMUST00000107898 3120 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
Scn11aQ9R053 Bend3-202ENSMUST00000167488 6337 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
Scn11aQ9R053 Kyat1-204ENSMUST00000113661 2057 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Scn11aQ9R053 Trmt10c-201ENSMUST00000059052 3002 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Scn11aQ9R053 Dnajc7-201ENSMUST00000014339 2330 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Scn11aQ9R053 Unc13a-208ENSMUST00000177517 5654 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
Scn11aQ9R053 Vps53-201ENSMUST00000056601 2833 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Scn11aQ9R053 Sox13-205ENSMUST00000153799 3693 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Scn11aQ9R053 Pde1c-203ENSMUST00000164037 3068 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Scn11aQ9R053 Tcf24-202ENSMUST00000185184 4193 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
Scn11aQ9R053 Ighv7-3-201ENSMUST00000103461 361 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
Scn11aQ9R053 Cd27-203ENSMUST00000112282 588 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Scn11aQ9R053 Pja1-202ENSMUST00000113790 2108 ntAPPRIS ALT2 TSL 2 BASIC16.01■□□□□ 0.15
Scn11aQ9R053 Gm14235-201ENSMUST00000142445 366 ntTSL 3 BASIC16.01■□□□□ 0.15
Scn11aQ9R053 4930524O07Rik-201ENSMUST00000161822 1050 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Scn11aQ9R053 4930594M17Rik-201ENSMUST00000181204 1033 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Scn11aQ9R053 Zfp709-202ENSMUST00000188374 717 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Scn11aQ9R053 Rfxank-203ENSMUST00000212320 1121 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Scn11aQ9R053 Gm31992-201ENSMUST00000213387 862 ntTSL 5 BASIC16.01■□□□□ 0.15
Scn11aQ9R053 Krtap4-7-201ENSMUST00000055121 984 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
Scn11aQ9R053 H2-T22-201ENSMUST00000058801 1534 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Scn11aQ9R053 Calr3-201ENSMUST00000019876 1769 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Scn11aQ9R053 Brd7-201ENSMUST00000034085 3625 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Scn11aQ9R053 Kcna1-202ENSMUST00000203094 3150 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
Scn11aQ9R053 Rnf157-202ENSMUST00000106398 4553 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
Scn11aQ9R053 Asb16-201ENSMUST00000036467 2843 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Scn11aQ9R053 Jazf1-201ENSMUST00000074541 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Scn11aQ9R053 F3-201ENSMUST00000029771 1872 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Scn11aQ9R053 Gm12846-201ENSMUST00000120431 1373 ntBASIC16.01■□□□□ 0.15
Scn11aQ9R053 Triml2-203ENSMUST00000209872 1395 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Scn11aQ9R053 Nr2f1-205ENSMUST00000150498 2588 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Scn11aQ9R053 Dusp15-203ENSMUST00000123121 2993 ntAPPRIS P1 TSL 3 BASIC16.01■□□□□ 0.15
Scn11aQ9R053 Gria4-203ENSMUST00000163309 2338 ntTSL 1 (best) BASIC16■□□□□ 0.15
Scn11aQ9R053 Gm13461-201ENSMUST00000120980 662 ntBASIC16■□□□□ 0.15
Scn11aQ9R053 Mypopos-201ENSMUST00000124897 560 ntTSL 3 BASIC16■□□□□ 0.15
Scn11aQ9R053 Gm44632-201ENSMUST00000207245 474 ntTSL 2 BASIC16■□□□□ 0.15
Scn11aQ9R053 Tmem210-201ENSMUST00000028340 516 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Scn11aQ9R053 Nsmce1-201ENSMUST00000033006 1120 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Scn11aQ9R053 Agbl3-205ENSMUST00000115017 3719 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
Scn11aQ9R053 Syt6-201ENSMUST00000090697 4416 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
Scn11aQ9R053 Gins3-201ENSMUST00000034094 2519 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Scn11aQ9R053 Luc7l3-201ENSMUST00000021226 3373 ntTSL 1 (best) BASIC16■□□□□ 0.15
Scn11aQ9R053 Taz-204ENSMUST00000124200 1742 ntTSL 1 (best) BASIC16■□□□□ 0.15
Scn11aQ9R053 Gm43273-201ENSMUST00000199649 2594 ntBASIC16■□□□□ 0.15
Scn11aQ9R053 Art3-206ENSMUST00000120416 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
Scn11aQ9R053 Ctgf-203ENSMUST00000176228 2490 ntTSL 2 BASIC16■□□□□ 0.15
Scn11aQ9R053 Hic1-201ENSMUST00000055619 3497 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Scn11aQ9R053 Map3k5-201ENSMUST00000095806 5450 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
Scn11aQ9R053 Mapk8ip3-221ENSMUST00000178969 5579 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
Scn11aQ9R053 1700029J07Rik-201ENSMUST00000095323 2740 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Scn11aQ9R053 Tfap2a-202ENSMUST00000110193 2863 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
Scn11aQ9R053 Gm5466-201ENSMUST00000119395 1890 ntBASIC16■□□□□ 0.15
Scn11aQ9R053 Gm22121-201ENSMUST00000175148 54 ntBASIC16■□□□□ 0.15
Scn11aQ9R053 Shroom1-201ENSMUST00000018531 2630 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
Scn11aQ9R053 Gm29396-201ENSMUST00000185659 716 ntBASIC16■□□□□ 0.15
Scn11aQ9R053 1700120C14Rik-202ENSMUST00000187967 391 ntTSL 1 (best) BASIC16■□□□□ 0.15
Scn11aQ9R053 Gm36937-201ENSMUST00000192957 429 ntTSL 3 BASIC16■□□□□ 0.15
Scn11aQ9R053 Dclk2-206ENSMUST00000193632 2336 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
Scn11aQ9R053 Gm38158-201ENSMUST00000194617 339 ntBASIC16■□□□□ 0.15
Scn11aQ9R053 AU022133-201ENSMUST00000200601 873 ntBASIC16■□□□□ 0.15
Scn11aQ9R053 Prss8-202ENSMUST00000206124 1709 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Scn11aQ9R053 Mymx-204ENSMUST00000208801 437 ntAPPRIS ALT2 TSL 2 BASIC16■□□□□ 0.15
Scn11aQ9R053 4930479H17Rik-201ENSMUST00000208824 292 ntTSL 1 (best) BASIC16■□□□□ 0.15
Scn11aQ9R053 Il15-202ENSMUST00000209363 1251 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Scn11aQ9R053 Gm18935-201ENSMUST00000212692 664 ntBASIC16■□□□□ 0.15
Scn11aQ9R053 Olfr1423-201ENSMUST00000087831 933 ntAPPRIS P1 BASIC16■□□□□ 0.15
Scn11aQ9R053 Slc29a1-203ENSMUST00000097317 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
Scn11aQ9R053 AC122371.1-201ENSMUST00000220876 1477 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Scn11aQ9R053 Apba1-201ENSMUST00000025830 6632 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Scn11aQ9R053 Jade1-203ENSMUST00000168086 4790 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Scn11aQ9R053 Slc24a4-202ENSMUST00000159329 4465 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
Scn11aQ9R053 Rasa4-201ENSMUST00000042135 2914 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Scn11aQ9R053 Tufm-201ENSMUST00000098048 1679 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Scn11aQ9R053 Nrxn2-204ENSMUST00000113461 5505 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
Scn11aQ9R053 Ptpn6-201ENSMUST00000004377 2308 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
Scn11aQ9R053 Tada3-202ENSMUST00000043333 1708 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Scn11aQ9R053 Selenbp1-201ENSMUST00000090839 1712 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Scn11aQ9R053 Selenbp2-201ENSMUST00000090848 1719 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Scn11aQ9R053 AC159649.2-201ENSMUST00000222984 3223 ntBASIC15.99■□□□□ 0.15
Scn11aQ9R053 Fbxo44-208ENSMUST00000167160 1572 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
Retrieved 100 of 76,532 protein–RNA pairs in 30.6 ms