Protein–RNA interactions for Protein: Q99JW4

Lims1, LIM and senescent cell antigen-like-containing domain protein 1, mousemouse

Predictions only

Length 325 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lims1Q99JW4 Gm24496-201ENSMUST00000178287 110 ntBASIC12.54□□□□□ -0.4
Lims1Q99JW4 Gm25649-201ENSMUST00000178476 110 ntBASIC12.54□□□□□ -0.4
Lims1Q99JW4 Gm25548-201ENSMUST00000178681 110 ntBASIC12.54□□□□□ -0.4
Lims1Q99JW4 Gm23147-201ENSMUST00000178841 110 ntBASIC12.54□□□□□ -0.4
Lims1Q99JW4 Gm26095-201ENSMUST00000179270 110 ntBASIC12.54□□□□□ -0.4
Lims1Q99JW4 Gm22171-201ENSMUST00000179283 110 ntBASIC12.54□□□□□ -0.4
Lims1Q99JW4 Gm23936-201ENSMUST00000179354 110 ntBASIC12.54□□□□□ -0.4
Lims1Q99JW4 Gm22619-201ENSMUST00000179516 110 ntBASIC12.54□□□□□ -0.4
Lims1Q99JW4 Gm25255-201ENSMUST00000179579 110 ntBASIC12.54□□□□□ -0.4
Lims1Q99JW4 Gm24755-201ENSMUST00000179691 110 ntBASIC12.54□□□□□ -0.4
Lims1Q99JW4 Gm26506-201ENSMUST00000179692 110 ntBASIC12.54□□□□□ -0.4
Lims1Q99JW4 Gm25086-201ENSMUST00000179931 110 ntBASIC12.54□□□□□ -0.4
Lims1Q99JW4 Gm23243-201ENSMUST00000180047 110 ntBASIC12.54□□□□□ -0.4
Lims1Q99JW4 Gm24659-201ENSMUST00000180212 110 ntBASIC12.54□□□□□ -0.4
Lims1Q99JW4 Gm24169-201ENSMUST00000180244 110 ntBASIC12.54□□□□□ -0.4
Lims1Q99JW4 Gm23689-201ENSMUST00000180354 110 ntBASIC12.54□□□□□ -0.4
Lims1Q99JW4 Gm26517-201ENSMUST00000181279 1172 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Lims1Q99JW4 Gm27359-201ENSMUST00000184153 110 ntBASIC12.54□□□□□ -0.4
Lims1Q99JW4 Gm27785-201ENSMUST00000184268 110 ntBASIC12.54□□□□□ -0.4
Lims1Q99JW4 Gm27466-201ENSMUST00000184396 110 ntBASIC12.54□□□□□ -0.4
Lims1Q99JW4 Gm27703-201ENSMUST00000184836 110 ntBASIC12.54□□□□□ -0.4
Lims1Q99JW4 Nmur1-202ENSMUST00000212058 1287 ntAPPRIS P3 TSL 5 BASIC12.54□□□□□ -0.4
Lims1Q99JW4 Elof1-203ENSMUST00000213233 810 ntAPPRIS P1 TSL 3 BASIC12.54□□□□□ -0.4
Lims1Q99JW4 Omp-201ENSMUST00000098281 2144 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
Lims1Q99JW4 Ppp4r3b-202ENSMUST00000102856 2410 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Lims1Q99JW4 Grid2-201ENSMUST00000095852 5860 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Lims1Q99JW4 Ccdc157-201ENSMUST00000093381 5015 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Lims1Q99JW4 Gm14452-201ENSMUST00000118680 1632 ntBASIC12.54□□□□□ -0.4
Lims1Q99JW4 Sfn-201ENSMUST00000057311 1613 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
Lims1Q99JW4 Slc4a1ap-209ENSMUST00000202214 2806 ntAPPRIS P3 TSL 5 BASIC12.54□□□□□ -0.4
Lims1Q99JW4 Podn-201ENSMUST00000044248 2885 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
Lims1Q99JW4 Pycrl-201ENSMUST00000053918 1353 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Lims1Q99JW4 Bbx-204ENSMUST00000114477 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Lims1Q99JW4 Gsn-201ENSMUST00000028239 2653 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
Lims1Q99JW4 Hsd17b7-202ENSMUST00000111353 1446 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Lims1Q99JW4 Shank3-201ENSMUST00000039074 7131 ntAPPRIS P2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Lims1Q99JW4 Mmp11-202ENSMUST00000120281 1793 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lims1Q99JW4 Pcdh7-202ENSMUST00000094783 3752 ntAPPRIS ALT1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lims1Q99JW4 Hist1h2be-202ENSMUST00000091704 2480 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lims1Q99JW4 Aurka-203ENSMUST00000109140 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lims1Q99JW4 Xlr-202ENSMUST00000067782 1860 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Lims1Q99JW4 Rnf168-201ENSMUST00000014218 3932 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lims1Q99JW4 Usp16-202ENSMUST00000119504 2562 ntTSL 5 BASIC12.53□□□□□ -0.4
Lims1Q99JW4 Iqgap1-201ENSMUST00000167377 7444 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lims1Q99JW4 Prrt3-205ENSMUST00000205170 1903 ntAPPRIS ALT2 TSL 2 BASIC12.53□□□□□ -0.4
Lims1Q99JW4 Def8-203ENSMUST00000093049 1909 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lims1Q99JW4 Sema4a-214ENSMUST00000166237 3046 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lims1Q99JW4 Gm2762-202ENSMUST00000201517 2339 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Lims1Q99JW4 Htr3a-202ENSMUST00000217289 1987 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lims1Q99JW4 Aire-207ENSMUST00000140636 1615 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Lims1Q99JW4 Arhgef40-201ENSMUST00000093813 5621 ntAPPRIS P4 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lims1Q99JW4 Romo1-203ENSMUST00000109598 362 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
Lims1Q99JW4 Cep250-203ENSMUST00000109618 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lims1Q99JW4 Snhg17-201ENSMUST00000133449 933 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Lims1Q99JW4 Atp5h-202ENSMUST00000073791 659 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
Lims1Q99JW4 Cox6b1-201ENSMUST00000075738 618 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lims1Q99JW4 Gm6594-201ENSMUST00000097278 288 ntAPPRIS P1 BASIC12.53□□□□□ -0.4
Lims1Q99JW4 Gpnmb-203ENSMUST00000204260 2430 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lims1Q99JW4 Slc4a7-201ENSMUST00000057015 8132 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lims1Q99JW4 Catsper3-202ENSMUST00000109898 1311 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lims1Q99JW4 Ddx42-201ENSMUST00000021046 4011 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lims1Q99JW4 Abhd14b-201ENSMUST00000048527 1745 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lims1Q99JW4 Golim4-208ENSMUST00000167078 2902 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lims1Q99JW4 Gm34016-201ENSMUST00000222678 1384 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Lims1Q99JW4 Dct-201ENSMUST00000022725 2202 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lims1Q99JW4 Sumf2-204ENSMUST00000171300 2264 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lims1Q99JW4 Mcm9-206ENSMUST00000220007 3513 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Lims1Q99JW4 Tmed9-203ENSMUST00000224741 1450 ntBASIC12.53□□□□□ -0.4
Lims1Q99JW4 Prnd-203ENSMUST00000110171 1938 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Lims1Q99JW4 Lrrc29-201ENSMUST00000070508 1922 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
Lims1Q99JW4 Rasal3-201ENSMUST00000063824 3681 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.4
Lims1Q99JW4 Hipk4-202ENSMUST00000108353 2409 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Lims1Q99JW4 Spo11-202ENSMUST00000109125 1591 ntAPPRIS ALT1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Lims1Q99JW4 Gm39377-201ENSMUST00000214587 2533 ntTSL 5 BASIC12.52□□□□□ -0.4
Lims1Q99JW4 BB123696-201ENSMUST00000222580 2056 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
Lims1Q99JW4 Plcd3-201ENSMUST00000103077 3023 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Lims1Q99JW4 Kank2-201ENSMUST00000034717 5040 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Lims1Q99JW4 Ate1-202ENSMUST00000035458 4685 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Lims1Q99JW4 Plxnb1-201ENSMUST00000072093 8649 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Lims1Q99JW4 Reps2-202ENSMUST00000112334 7675 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Lims1Q99JW4 Ap4b1-203ENSMUST00000106823 2741 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Lims1Q99JW4 Creb3l3-201ENSMUST00000117422 2294 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Lims1Q99JW4 AC168058.1-201ENSMUST00000219521 2282 ntBASIC12.52□□□□□ -0.41
Lims1Q99JW4 Sept1-201ENSMUST00000106313 1285 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.41
Lims1Q99JW4 Paxx-201ENSMUST00000114261 981 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Lims1Q99JW4 Gm14057-201ENSMUST00000120631 482 ntBASIC12.52□□□□□ -0.41
Lims1Q99JW4 Gm15199-201ENSMUST00000129933 542 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Lims1Q99JW4 Lgals3-203ENSMUST00000146468 1072 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Lims1Q99JW4 Gm13883-202ENSMUST00000151310 1156 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Lims1Q99JW4 Cox16-206ENSMUST00000168463 431 ntTSL 2 BASIC12.52□□□□□ -0.41
Lims1Q99JW4 Dynlt1b-201ENSMUST00000179569 768 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Lims1Q99JW4 Gm43474-201ENSMUST00000196415 774 ntBASIC12.52□□□□□ -0.41
Lims1Q99JW4 Gm44335-201ENSMUST00000196879 141 ntBASIC12.52□□□□□ -0.41
Lims1Q99JW4 4930432H08Rik-201ENSMUST00000198220 1284 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Lims1Q99JW4 Gm44297-201ENSMUST00000198304 141 ntBASIC12.52□□□□□ -0.41
Lims1Q99JW4 Gm44346-201ENSMUST00000198851 141 ntBASIC12.52□□□□□ -0.41
Lims1Q99JW4 Hapln3-202ENSMUST00000205782 930 ntTSL 5 BASIC12.52□□□□□ -0.41
Lims1Q99JW4 Gm44872-201ENSMUST00000207864 420 ntBASIC12.52□□□□□ -0.41
Lims1Q99JW4 Gzma-201ENSMUST00000023897 878 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Lims1Q99JW4 Clps-201ENSMUST00000025062 550 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 42.8 ms