Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Gm27177-203ENSMUST00000184034 1911 ntTSL 5 BASIC20.78■□□□□ 0.92
Cux1P53564 Gm11210-201ENSMUST00000150203 422 ntTSL 3 BASIC20.78■□□□□ 0.92
Cux1P53564 Gm29585-203ENSMUST00000188089 835 ntTSL 5 BASIC20.78■□□□□ 0.92
Cux1P53564 Sox2ot-207ENSMUST00000196987 727 ntTSL 3 BASIC20.78■□□□□ 0.92
Cux1P53564 1810062G17Rik-201ENSMUST00000029268 911 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Cux1P53564 Vmn1r213-201ENSMUST00000076897 1155 ntAPPRIS P2 BASIC20.78■□□□□ 0.92
Cux1P53564 Syt6-201ENSMUST00000090697 4416 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
Cux1P53564 Rbm34-201ENSMUST00000045994 3424 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Cux1P53564 Endou-201ENSMUST00000023105 2404 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
Cux1P53564 Arfgap1-203ENSMUST00000108860 2326 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
Cux1P53564 2810474O19Rik-201ENSMUST00000046689 6066 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
Cux1P53564 Tmpo-202ENSMUST00000072239 3533 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Cux1P53564 Add2-203ENSMUST00000203279 1454 ntTSL 2 BASIC20.77■□□□□ 0.92
Cux1P53564 Apol6-206ENSMUST00000149569 2315 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
Cux1P53564 Zscan2-201ENSMUST00000044115 2310 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Cux1P53564 AC101945.2-201ENSMUST00000227886 1377 ntBASIC20.77■□□□□ 0.92
Cux1P53564 Klhl26-202ENSMUST00000166976 2734 ntTSL 2 BASIC20.77■□□□□ 0.92
Cux1P53564 Gm12997-201ENSMUST00000120207 640 ntBASIC20.77■□□□□ 0.92
Cux1P53564 Gm12216-202ENSMUST00000120776 826 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.92
Cux1P53564 1700003G18Rik-201ENSMUST00000140689 633 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Cux1P53564 Gm15738-202ENSMUST00000140892 427 ntTSL 2 BASIC20.77■□□□□ 0.92
Cux1P53564 Aamdc-210ENSMUST00000146605 642 ntTSL 3 BASIC20.77■□□□□ 0.92
Cux1P53564 Gm26185-201ENSMUST00000157692 266 ntBASIC20.77■□□□□ 0.92
Cux1P53564 Ly6g5b-202ENSMUST00000172854 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
Cux1P53564 Gm39929-201ENSMUST00000209672 693 ntTSL 3 BASIC20.77■□□□□ 0.92
Cux1P53564 AC152453.1-201ENSMUST00000218802 1254 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Cux1P53564 Gm3402-201ENSMUST00000036715 981 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
Cux1P53564 Tef-201ENSMUST00000023024 4079 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Cux1P53564 Itpkc-201ENSMUST00000003850 3247 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Cux1P53564 Rundc1-201ENSMUST00000040561 3223 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Cux1P53564 Cnot11-203ENSMUST00000161515 3482 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Cux1P53564 Sqle-201ENSMUST00000022977 2758 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
Cux1P53564 Gnl3-201ENSMUST00000037739 1947 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
Cux1P53564 Gm43697-201ENSMUST00000199637 2581 ntBASIC20.76■□□□□ 0.91
Cux1P53564 Npepps-215ENSMUST00000167806 2307 ntTSL 5 BASIC20.76■□□□□ 0.91
Cux1P53564 Csnk1g1-212ENSMUST00000206048 2073 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
Cux1P53564 Midn-201ENSMUST00000042057 3727 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
Cux1P53564 Gabpa-201ENSMUST00000009120 4987 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Cux1P53564 Kcnq5-203ENSMUST00000115300 6975 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Cux1P53564 Ppm1a-201ENSMUST00000021514 7668 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Cux1P53564 Cabp1-203ENSMUST00000112112 746 ntAPPRIS ALT1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Cux1P53564 Gm13442-201ENSMUST00000135749 663 ntTSL 3 BASIC20.76■□□□□ 0.91
Cux1P53564 Ftl1-ps2-201ENSMUST00000169477 549 ntBASIC20.76■□□□□ 0.91
Cux1P53564 Gm22121-201ENSMUST00000175148 54 ntBASIC20.76■□□□□ 0.91
Cux1P53564 BC049730-201ENSMUST00000051714 1172 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Cux1P53564 Gm9843-201ENSMUST00000052867 504 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
Cux1P53564 Sfrp1-201ENSMUST00000033952 4372 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Cux1P53564 Ttc5-201ENSMUST00000006451 1842 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Cux1P53564 Cstf2-203ENSMUST00000113287 3661 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Cux1P53564 Il2rb-202ENSMUST00000163494 1894 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Cux1P53564 Ctgf-203ENSMUST00000176228 2490 ntTSL 2 BASIC20.76■□□□□ 0.91
Cux1P53564 Zfp800-202ENSMUST00000115320 4311 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Cux1P53564 Psma3-202ENSMUST00000160027 2846 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Cux1P53564 Dscam-201ENSMUST00000056102 7498 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Cux1P53564 Papd5-202ENSMUST00000118952 4597 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Cux1P53564 Gm18584-201ENSMUST00000203098 964 ntBASIC20.75■□□□□ 0.91
Cux1P53564 H2-M10.2-201ENSMUST00000023845 1113 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Cux1P53564 Fmr1nb-202ENSMUST00000071848 842 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
Cux1P53564 Npas3-204ENSMUST00000223358 3143 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Cux1P53564 Amz2-202ENSMUST00000092500 2816 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Cux1P53564 Epb41l5-201ENSMUST00000027632 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Cux1P53564 Zkscan3-203ENSMUST00000116434 2600 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Cux1P53564 Dnmt3l-208ENSMUST00000151242 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Cux1P53564 Zfp82-201ENSMUST00000080834 2181 ntAPPRIS P3 TSL 5 BASIC20.75■□□□□ 0.91
Cux1P53564 Fgfr1op-202ENSMUST00000097419 3505 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Cux1P53564 Chtf18-201ENSMUST00000048054 3214 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Cux1P53564 Cdr2l-201ENSMUST00000053288 3700 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Cux1P53564 Hps5-202ENSMUST00000107653 4702 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Cux1P53564 Ociad2-201ENSMUST00000087195 2554 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Cux1P53564 Cyp4f37-201ENSMUST00000077639 2642 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Cux1P53564 Sectm1a-204ENSMUST00000106120 1020 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
Cux1P53564 Cabp2-201ENSMUST00000159148 1030 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Cux1P53564 Gm20416-201ENSMUST00000174760 484 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Cux1P53564 Rps3a1-201ENSMUST00000029722 977 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Cux1P53564 Bscl2-210ENSMUST00000171649 1962 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
Cux1P53564 Serpinb2-201ENSMUST00000009356 1970 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Cux1P53564 Npas3-201ENSMUST00000101432 5879 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Cux1P53564 Gpsm1-204ENSMUST00000114134 2043 ntTSL 3 BASIC20.74■□□□□ 0.91
Cux1P53564 Cops7a-202ENSMUST00000112439 1328 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Cux1P53564 Gm45133-201ENSMUST00000207548 2773 ntBASIC20.74■□□□□ 0.91
Cux1P53564 Slc24a4-202ENSMUST00000159329 4465 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Cux1P53564 Gm26799-201ENSMUST00000180959 1361 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Cux1P53564 Gm26821-201ENSMUST00000181954 2652 ntTSL 5 BASIC20.74■□□□□ 0.91
Cux1P53564 Rhbdl2-202ENSMUST00000106204 1120 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
Cux1P53564 Fgf18-202ENSMUST00000109363 991 ntTSL 3 BASIC20.73■□□□□ 0.91
Cux1P53564 Timm10b-208ENSMUST00000151193 1083 ntTSL 2 BASIC20.73■□□□□ 0.91
Cux1P53564 Smco4-202ENSMUST00000178999 820 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Cux1P53564 AC069562.3-201ENSMUST00000225387 587 ntBASIC20.73■□□□□ 0.91
Cux1P53564 Smco4-201ENSMUST00000045620 954 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Cux1P53564 Cdh2-201ENSMUST00000025166 4843 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Cux1P53564 1810058I24Rik-203ENSMUST00000152147 2521 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Cux1P53564 Stx5a-202ENSMUST00000073430 2112 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Cux1P53564 Csnk2a2-201ENSMUST00000056919 3773 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Cux1P53564 Sema3b-201ENSMUST00000073448 2987 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Cux1P53564 Shroom4-202ENSMUST00000103005 4839 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Cux1P53564 Klf15-202ENSMUST00000113530 2374 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
Cux1P53564 Lrp11-203ENSMUST00000130590 3220 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Cux1P53564 Sacs-204ENSMUST00000121091 4581 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Cux1P53564 Rbmx-203ENSMUST00000114730 2019 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
Cux1P53564 Ap4b1-202ENSMUST00000076599 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Retrieved 100 of 76,532 protein–RNA pairs in 38.4 ms