Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 AC158633.2-201ENSMUST00000222959 6046 ntTSL 5 BASIC16.42■□□□□ 0.22
Rfx1P48377 Lnx1-205ENSMUST00000117525 2259 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Rfx1P48377 Gm13823-201ENSMUST00000119930 345 ntBASIC16.42■□□□□ 0.22
Rfx1P48377 Gm18041-201ENSMUST00000218210 618 ntBASIC16.42■□□□□ 0.22
Rfx1P48377 AC149588.3-201ENSMUST00000227515 150 ntBASIC16.42■□□□□ 0.22
Rfx1P48377 Gstm1-201ENSMUST00000004140 1289 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Rfx1P48377 D630023F18Rik-201ENSMUST00000050047 2180 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
Rfx1P48377 Gata1-201ENSMUST00000033502 1902 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Rfx1P48377 Fmn2-201ENSMUST00000030039 6442 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Rfx1P48377 Asb10-201ENSMUST00000048302 2327 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Rfx1P48377 Foxb1-201ENSMUST00000071281 2984 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Rfx1P48377 Lrriq4-201ENSMUST00000108265 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Rfx1P48377 Elf3-201ENSMUST00000003135 2095 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
Rfx1P48377 Nrap-201ENSMUST00000040711 5334 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Rfx1P48377 Inhba-201ENSMUST00000042603 6390 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Rfx1P48377 Ube2d-ps-205ENSMUST00000142942 1840 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Rfx1P48377 Usp33-209ENSMUST00000197748 4183 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
Rfx1P48377 Oprm1-215ENSMUST00000105607 2369 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Rfx1P48377 Gm14379-201ENSMUST00000128858 1878 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Rfx1P48377 Myog-201ENSMUST00000027730 1495 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Rfx1P48377 Ak4-201ENSMUST00000102780 4186 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
Rfx1P48377 Prdm5-202ENSMUST00000031976 2155 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Rfx1P48377 Rbm46-201ENSMUST00000048647 1794 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
Rfx1P48377 Ampd2-202ENSMUST00000102637 3586 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
Rfx1P48377 Gm8337-201ENSMUST00000187358 1938 ntBASIC16.41■□□□□ 0.22
Rfx1P48377 BC001981-202ENSMUST00000191393 1545 ntBASIC16.41■□□□□ 0.22
Rfx1P48377 Gatad2a-206ENSMUST00000212478 3622 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
Rfx1P48377 Krt36-201ENSMUST00000107416 1671 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
Rfx1P48377 Phkg1-201ENSMUST00000026617 2374 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Rfx1P48377 Ano6-201ENSMUST00000071874 4927 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Rfx1P48377 Net1-201ENSMUST00000091853 2680 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
Rfx1P48377 Mecom-206ENSMUST00000172694 4381 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Rfx1P48377 H2-Q6-201ENSMUST00000113879 981 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
Rfx1P48377 Gm12017-201ENSMUST00000122453 1003 ntBASIC16.41■□□□□ 0.22
Rfx1P48377 2410006H16Rik-201ENSMUST00000131787 462 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Rfx1P48377 4930570G19Rik-204ENSMUST00000149387 986 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Rfx1P48377 Tdrkh-208ENSMUST00000200486 1231 ntTSL 3 BASIC16.41■□□□□ 0.22
Rfx1P48377 Cd3g-201ENSMUST00000002101 1023 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Rfx1P48377 Zfp36l1-201ENSMUST00000021552 2990 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Rfx1P48377 Cttnbp2nl-202ENSMUST00000098763 4834 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Rfx1P48377 Rbmx2-201ENSMUST00000033433 1747 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Rfx1P48377 Ntrk2-204ENSMUST00000224259 3049 ntBASIC16.41■□□□□ 0.22
Rfx1P48377 Twistnb-201ENSMUST00000020877 4325 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Rfx1P48377 Wnt9a-201ENSMUST00000000128 3320 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
Rfx1P48377 Mink1-203ENSMUST00000079244 4829 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Rfx1P48377 Chchd5-201ENSMUST00000035481 1325 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Rfx1P48377 R3hcc1-206ENSMUST00000216152 1467 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Rfx1P48377 Ccdc116-203ENSMUST00000115711 1915 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Rfx1P48377 Pltp-202ENSMUST00000109316 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Rfx1P48377 Nfatc2ip-201ENSMUST00000075671 3388 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Rfx1P48377 Stxbp2-207ENSMUST00000160708 2908 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Rfx1P48377 Il6ra-202ENSMUST00000197679 8639 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Rfx1P48377 Shroom1-201ENSMUST00000018531 2630 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Rfx1P48377 Cpeb4-201ENSMUST00000020543 2312 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Rfx1P48377 Tbc1d1-201ENSMUST00000043893 6471 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
Rfx1P48377 C920006O11Rik-201ENSMUST00000180974 1444 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Rfx1P48377 Sh2b1-206ENSMUST00000205889 3011 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Rfx1P48377 Gm11025-201ENSMUST00000140773 466 ntBASIC16.4■□□□□ 0.22
Rfx1P48377 Gm18733-201ENSMUST00000173950 856 ntBASIC16.4■□□□□ 0.22
Rfx1P48377 Gm27741-201ENSMUST00000185060 237 ntBASIC16.4■□□□□ 0.22
Rfx1P48377 Klrg2-202ENSMUST00000201345 1225 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
Rfx1P48377 Gm5364-201ENSMUST00000216789 889 ntBASIC16.4■□□□□ 0.22
Rfx1P48377 Il31-201ENSMUST00000031389 806 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Rfx1P48377 Mrpl34-201ENSMUST00000048914 607 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Rfx1P48377 Lce3c-201ENSMUST00000055375 567 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Rfx1P48377 Cyp2d40-201ENSMUST00000055721 1161 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Rfx1P48377 Atad3aos-201ENSMUST00000067628 971 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Rfx1P48377 Commd5-201ENSMUST00000068407 1037 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Rfx1P48377 Gm10073-201ENSMUST00000073722 496 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
Rfx1P48377 Rplp1-201ENSMUST00000008036 499 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Rfx1P48377 Apbb1-212ENSMUST00000189072 2085 ntTSL 5 BASIC16.4■□□□□ 0.22
Rfx1P48377 Celf3-201ENSMUST00000029784 2744 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Rfx1P48377 Parp10-202ENSMUST00000165738 3367 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Rfx1P48377 Syt2-204ENSMUST00000188842 3386 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Rfx1P48377 Pcdha11-203ENSMUST00000192447 4583 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Rfx1P48377 Gm42466-201ENSMUST00000202099 1301 ntBASIC16.4■□□□□ 0.22
Rfx1P48377 Fnbp4-201ENSMUST00000013759 4691 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Rfx1P48377 Gm7002-201ENSMUST00000221386 2165 ntBASIC16.4■□□□□ 0.22
Rfx1P48377 Pcdh8-201ENSMUST00000039568 4000 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
Rfx1P48377 Oxa1l-201ENSMUST00000000985 2538 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Rfx1P48377 1600020E01Rik-206ENSMUST00000204663 2007 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Rfx1P48377 Gtse1-201ENSMUST00000170629 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
Rfx1P48377 Gm7899-201ENSMUST00000192935 1897 ntBASIC16.39■□□□□ 0.22
Rfx1P48377 Apbb2-203ENSMUST00000159512 6632 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Rfx1P48377 Atat1-201ENSMUST00000056034 1930 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
Rfx1P48377 Astl-202ENSMUST00000089673 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Rfx1P48377 Rlbp1-201ENSMUST00000053718 2134 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Rfx1P48377 5730409E04Rik-202ENSMUST00000164362 2855 ntAPPRIS P1 TSL 3 BASIC16.39■□□□□ 0.21
Rfx1P48377 Prrxl1-203ENSMUST00000187377 1629 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Rfx1P48377 Acsf3-203ENSMUST00000212790 2171 ntAPPRIS P2 TSL 5 BASIC16.39■□□□□ 0.21
Rfx1P48377 Larp4b-202ENSMUST00000188211 5610 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Rfx1P48377 BC003331-205ENSMUST00000111913 3273 ntAPPRIS P3 TSL 5 BASIC16.39■□□□□ 0.21
Rfx1P48377 Epo-202ENSMUST00000111038 855 ntAPPRIS P3 TSL 5 BASIC16.39■□□□□ 0.21
Rfx1P48377 Gm25925-201ENSMUST00000158314 306 ntBASIC16.39■□□□□ 0.21
Rfx1P48377 Naxd-205ENSMUST00000178721 1108 ntTSL 5 BASIC16.39■□□□□ 0.21
Rfx1P48377 A430093F15Rik-205ENSMUST00000188480 509 ntTSL 3 BASIC16.39■□□□□ 0.21
Rfx1P48377 Gm30934-201ENSMUST00000215803 815 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Rfx1P48377 Smdt1-201ENSMUST00000023086 705 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Rfx1P48377 C1qa-201ENSMUST00000046285 1040 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Rfx1P48377 Arhgef2-208ENSMUST00000175911 2030 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
Retrieved 100 of 76,532 protein–RNA pairs in 50.9 ms