Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Ghr-201ENSMUST00000069451 4175 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Chd3B1AR17 Stum-201ENSMUST00000136521 6506 ntAPPRIS P2 TSL 1 (best) BASIC13.43□□□□□ -0.26
Chd3B1AR17 Ipo8-201ENSMUST00000048418 5360 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Chd3B1AR17 Gm5779-202ENSMUST00000219564 1477 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Chd3B1AR17 Ppp1r12b-201ENSMUST00000045665 8840 ntAPPRIS ALT2 TSL 5 BASIC13.43□□□□□ -0.26
Chd3B1AR17 Prrxl1-202ENSMUST00000186452 2371 ntAPPRIS P1 TSL 5 BASIC13.43□□□□□ -0.26
Chd3B1AR17 Trav4-2-201ENSMUST00000103637 370 ntAPPRIS P1 BASIC13.43□□□□□ -0.26
Chd3B1AR17 Gm12928-201ENSMUST00000117115 573 ntBASIC13.43□□□□□ -0.26
Chd3B1AR17 Gm13226-201ENSMUST00000117838 404 ntBASIC13.43□□□□□ -0.26
Chd3B1AR17 1700061E18Rik-201ENSMUST00000154159 588 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Chd3B1AR17 Otx2os1-202ENSMUST00000183803 743 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Chd3B1AR17 Gm17870-201ENSMUST00000219489 1174 ntBASIC13.43□□□□□ -0.26
Chd3B1AR17 Eno2-216ENSMUST00000204896 1640 ntTSL 5 BASIC13.43□□□□□ -0.26
Chd3B1AR17 Sf1-204ENSMUST00000113489 2863 ntTSL 5 BASIC13.43□□□□□ -0.26
Chd3B1AR17 Rasa4-202ENSMUST00000100570 2660 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Chd3B1AR17 Syngr2-202ENSMUST00000120928 1402 ntTSL 2 BASIC13.43□□□□□ -0.26
Chd3B1AR17 Eda-206ENSMUST00000113779 4955 ntAPPRIS P3 TSL 1 (best) BASIC13.43□□□□□ -0.26
Chd3B1AR17 Mark2-201ENSMUST00000025921 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
Chd3B1AR17 Rbm47-206ENSMUST00000200775 3180 ntAPPRIS P3 TSL 1 (best) BASIC13.43□□□□□ -0.26
Chd3B1AR17 Aqp8-201ENSMUST00000033023 1487 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
Chd3B1AR17 She-201ENSMUST00000050401 5733 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Chd3B1AR17 Dlg1-201ENSMUST00000023454 3725 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Chd3B1AR17 Nfe2l1-201ENSMUST00000081775 4654 ntAPPRIS P3 TSL 1 (best) BASIC13.43□□□□□ -0.26
Chd3B1AR17 Fam53b-205ENSMUST00000106166 1270 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Chd3B1AR17 Apoc3-203ENSMUST00000121916 709 ntTSL 2 BASIC13.43□□□□□ -0.26
Chd3B1AR17 9130410C08Rik-201ENSMUST00000155499 1088 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Chd3B1AR17 Tldc2-202ENSMUST00000166140 639 ntAPPRIS P2 TSL 5 BASIC13.43□□□□□ -0.26
Chd3B1AR17 Gm8835-201ENSMUST00000173096 1169 ntBASIC13.43□□□□□ -0.26
Chd3B1AR17 Gm29608-201ENSMUST00000190444 463 ntBASIC13.43□□□□□ -0.26
Chd3B1AR17 Psmc3ip-201ENSMUST00000019447 1291 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Chd3B1AR17 Gm7287-201ENSMUST00000205267 602 ntBASIC13.43□□□□□ -0.26
Chd3B1AR17 Tssc1-207ENSMUST00000222407 489 ntTSL 3 BASIC13.43□□□□□ -0.26
Chd3B1AR17 AC150560.1-201ENSMUST00000227731 1187 ntBASIC13.43□□□□□ -0.26
Chd3B1AR17 AC122459.1-201ENSMUST00000228373 885 ntBASIC13.43□□□□□ -0.26
Chd3B1AR17 Elane-201ENSMUST00000046091 984 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Chd3B1AR17 Opn1sw-203ENSMUST00000147483 1426 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Chd3B1AR17 Serpine3-201ENSMUST00000171692 1402 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Chd3B1AR17 Hsph1-211ENSMUST00000202361 3802 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Chd3B1AR17 Ppp1r1b-206ENSMUST00000150762 1801 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Chd3B1AR17 Wasf2-201ENSMUST00000084241 5642 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Chd3B1AR17 Anks1b-205ENSMUST00000179694 2663 ntTSL 5 BASIC13.42□□□□□ -0.26
Chd3B1AR17 Lypla1-201ENSMUST00000027036 2507 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Chd3B1AR17 Cnksr2-202ENSMUST00000112513 4471 ntTSL 5 BASIC13.42□□□□□ -0.26
Chd3B1AR17 Mfap4-202ENSMUST00000064783 1722 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
Chd3B1AR17 C130080G10Rik-203ENSMUST00000154140 1564 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Chd3B1AR17 Trim26-202ENSMUST00000123715 1406 ntTSL 5 BASIC13.42□□□□□ -0.26
Chd3B1AR17 Cnih4-203ENSMUST00000111059 3127 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Chd3B1AR17 Tsc22d1-202ENSMUST00000048371 4818 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Chd3B1AR17 Hypk-204ENSMUST00000126764 961 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Chd3B1AR17 Gm22331-201ENSMUST00000158066 136 ntBASIC13.42□□□□□ -0.26
Chd3B1AR17 Ucma-204ENSMUST00000167607 785 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Chd3B1AR17 Trmt112-ps1-201ENSMUST00000202320 375 ntBASIC13.42□□□□□ -0.26
Chd3B1AR17 Slc35d2-202ENSMUST00000220792 917 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
Chd3B1AR17 Fdft1-204ENSMUST00000224625 3698 ntAPPRIS P1 BASIC13.42□□□□□ -0.26
Chd3B1AR17 Gm42872-201ENSMUST00000200026 1967 ntBASIC13.42□□□□□ -0.26
Chd3B1AR17 I730028E13Rik-201ENSMUST00000216012 1959 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Chd3B1AR17 Abhd6-203ENSMUST00000225234 1958 ntBASIC13.42□□□□□ -0.26
Chd3B1AR17 Jph3-201ENSMUST00000026357 3637 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Chd3B1AR17 Slc6a4-202ENSMUST00000108402 2796 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
Chd3B1AR17 Sgce-204ENSMUST00000115577 1776 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Chd3B1AR17 Loxl1-201ENSMUST00000061799 3297 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Chd3B1AR17 Plekha1-203ENSMUST00000120441 3777 ntAPPRIS ALT2 TSL 5 BASIC13.42□□□□□ -0.26
Chd3B1AR17 Grk4-201ENSMUST00000001112 2408 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Chd3B1AR17 Cdhr5-202ENSMUST00000167263 2628 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
Chd3B1AR17 Kcna5-201ENSMUST00000060972 2862 ntAPPRIS P1 BASIC13.42□□□□□ -0.26
Chd3B1AR17 Il12rb1-205ENSMUST00000212657 2741 ntAPPRIS ALT2 TSL 5 BASIC13.41□□□□□ -0.26
Chd3B1AR17 Gm9816-201ENSMUST00000122292 1414 ntBASIC13.41□□□□□ -0.26
Chd3B1AR17 Ablim3-201ENSMUST00000049378 4532 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Chd3B1AR17 Zdhhc15-201ENSMUST00000042070 5509 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Chd3B1AR17 Tpd52l2-203ENSMUST00000108799 985 ntTSL 5 BASIC13.41□□□□□ -0.26
Chd3B1AR17 Oprm1-229ENSMUST00000152674 1179 ntTSL 3 BASIC13.41□□□□□ -0.26
Chd3B1AR17 Commd6-203ENSMUST00000168587 519 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
Chd3B1AR17 Gm26894-201ENSMUST00000180828 1134 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Chd3B1AR17 Gm5069-202ENSMUST00000192714 1011 ntBASIC13.41□□□□□ -0.26
Chd3B1AR17 Gm42303-201ENSMUST00000209960 1170 ntTSL 5 BASIC13.41□□□□□ -0.26
Chd3B1AR17 Kcna1-202ENSMUST00000203094 3150 ntAPPRIS P1 BASIC13.41□□□□□ -0.26
Chd3B1AR17 Mzf1-204ENSMUST00000182490 2872 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
Chd3B1AR17 9130011E15Rik-201ENSMUST00000045396 2896 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
Chd3B1AR17 Pex3-202ENSMUST00000105539 1961 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Chd3B1AR17 Gm13055-201ENSMUST00000127875 1961 ntTSL 5 BASIC13.41□□□□□ -0.26
Chd3B1AR17 Tcf3-208ENSMUST00000105344 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
Chd3B1AR17 Ubtf-209ENSMUST00000173870 2936 ntAPPRIS P3 TSL 5 BASIC13.41□□□□□ -0.26
Chd3B1AR17 Celrr-202ENSMUST00000181433 1561 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Chd3B1AR17 Tpr-201ENSMUST00000119161 7480 ntAPPRIS ALT2 TSL 5 BASIC13.41□□□□□ -0.26
Chd3B1AR17 Cyb561d1-202ENSMUST00000106654 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Chd3B1AR17 Il15-201ENSMUST00000034148 1908 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Chd3B1AR17 Capn15-205ENSMUST00000212520 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
Chd3B1AR17 Gm38197-201ENSMUST00000192320 2122 ntBASIC13.41□□□□□ -0.26
Chd3B1AR17 Adcy3-204ENSMUST00000127756 4672 ntAPPRIS P3 TSL 5 BASIC13.41□□□□□ -0.26
Chd3B1AR17 Pnpo-202ENSMUST00000107629 681 ntTSL 3 BASIC13.41□□□□□ -0.26
Chd3B1AR17 Arpc3-203ENSMUST00000111713 708 ntTSL 3 BASIC13.41□□□□□ -0.26
Chd3B1AR17 Gm11684-201ENSMUST00000144975 757 ntTSL 5 BASIC13.41□□□□□ -0.26
Chd3B1AR17 Ube4bos1-202ENSMUST00000151896 1286 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Chd3B1AR17 Gm38319-201ENSMUST00000194537 1266 ntBASIC13.41□□□□□ -0.26
Chd3B1AR17 Gm18473-201ENSMUST00000220543 868 ntBASIC13.41□□□□□ -0.26
Chd3B1AR17 Cracr2a-201ENSMUST00000071563 1094 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Chd3B1AR17 Gm648-201ENSMUST00000081133 1040 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Chd3B1AR17 Zfp568-203ENSMUST00000148442 4005 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
Chd3B1AR17 Adam15-201ENSMUST00000029676 2975 ntAPPRIS P4 TSL 1 (best) BASIC13.41□□□□□ -0.26
Chd3B1AR17 Ankrd23-202ENSMUST00000193083 2277 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Retrieved 100 of 76,532 protein–RNA pairs in 30 ms