Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Cnot7-201ENSMUST00000034012 2615 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Lmx1bO88609 Bbx-204ENSMUST00000114477 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Lmx1bO88609 Chtop-206ENSMUST00000107344 2972 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Lmx1bO88609 Trim26-201ENSMUST00000053434 3198 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Lmx1bO88609 Rbsn-201ENSMUST00000014694 5334 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Lmx1bO88609 Itgb3-201ENSMUST00000021028 5784 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Lmx1bO88609 Angel2-202ENSMUST00000066632 3714 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Lmx1bO88609 Mul1-203ENSMUST00000105815 473 ntTSL 3 BASIC12.5□□□□□ -0.41
Lmx1bO88609 Gm14127-201ENSMUST00000117906 678 ntBASIC12.5□□□□□ -0.41
Lmx1bO88609 Vps29-204ENSMUST00000118830 1014 ntAPPRIS ALT1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Lmx1bO88609 Gm4804-201ENSMUST00000182234 999 ntBASIC12.5□□□□□ -0.41
Lmx1bO88609 Asb1-205ENSMUST00000188081 1272 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Lmx1bO88609 Asb1-206ENSMUST00000188879 1299 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Lmx1bO88609 Poc1a-205ENSMUST00000191434 1242 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Lmx1bO88609 Gm19220-201ENSMUST00000222682 803 ntBASIC12.5□□□□□ -0.41
Lmx1bO88609 AC238811.3-201ENSMUST00000225422 709 ntBASIC12.5□□□□□ -0.41
Lmx1bO88609 Prss41-201ENSMUST00000024926 1128 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Lmx1bO88609 Rps15-201ENSMUST00000062674 572 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Lmx1bO88609 Gm9109-201ENSMUST00000120254 1405 ntBASIC12.5□□□□□ -0.41
Lmx1bO88609 Sbds-201ENSMUST00000026387 1548 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Lmx1bO88609 Exosc5-206ENSMUST00000206561 1680 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Lmx1bO88609 Cfap45-201ENSMUST00000085894 1908 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Lmx1bO88609 Aspm-205ENSMUST00000200083 6072 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Lmx1bO88609 Spns1-201ENSMUST00000032994 2219 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Lmx1bO88609 Ablim1-209ENSMUST00000111546 2267 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
Lmx1bO88609 Sh3bp5-201ENSMUST00000091903 2684 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
Lmx1bO88609 Evx1os-201ENSMUST00000125305 2916 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Lmx1bO88609 Ska1-201ENSMUST00000040188 2669 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Lmx1bO88609 Tacc3-201ENSMUST00000074849 2669 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Lmx1bO88609 Angptl7-201ENSMUST00000030840 2157 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Lmx1bO88609 Mbp-203ENSMUST00000075372 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Lmx1bO88609 Neu2-203ENSMUST00000164128 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Lmx1bO88609 Tbl1xr1-203ENSMUST00000193734 8237 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Lmx1bO88609 Dmrtc2-201ENSMUST00000011493 1619 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Lmx1bO88609 9330182L06Rik-201ENSMUST00000069538 4688 ntAPPRIS P2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Lmx1bO88609 Reck-201ENSMUST00000030198 4433 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Lmx1bO88609 Sh2b3-202ENSMUST00000086310 4195 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
Lmx1bO88609 Pam-202ENSMUST00000097625 4102 ntAPPRIS P2 TSL 5 BASIC12.49□□□□□ -0.41
Lmx1bO88609 Wbp2nl-201ENSMUST00000023089 1318 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Lmx1bO88609 Mif4gd-202ENSMUST00000106506 993 ntTSL 3 BASIC12.49□□□□□ -0.41
Lmx1bO88609 Pdpn-202ENSMUST00000119654 762 ntAPPRIS ALT2 TSL 3 BASIC12.49□□□□□ -0.41
Lmx1bO88609 Gm12341-201ENSMUST00000119724 503 ntBASIC12.49□□□□□ -0.41
Lmx1bO88609 Gm11918-201ENSMUST00000121660 179 ntBASIC12.49□□□□□ -0.41
Lmx1bO88609 Ercc1-203ENSMUST00000160369 1175 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Lmx1bO88609 Atp5j2-202ENSMUST00000161741 955 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Lmx1bO88609 Gm5354-201ENSMUST00000182417 973 ntBASIC12.49□□□□□ -0.41
Lmx1bO88609 Gm42722-201ENSMUST00000198855 940 ntTSL 3 BASIC12.49□□□□□ -0.41
Lmx1bO88609 Gm5279-201ENSMUST00000199575 745 ntBASIC12.49□□□□□ -0.41
Lmx1bO88609 Gm44608-201ENSMUST00000206827 855 ntBASIC12.49□□□□□ -0.41
Lmx1bO88609 2310016G11Rik-202ENSMUST00000209111 733 ntTSL 3 BASIC12.49□□□□□ -0.41
Lmx1bO88609 Timm9-206ENSMUST00000221367 836 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
Lmx1bO88609 Tssc1-207ENSMUST00000222407 489 ntTSL 3 BASIC12.49□□□□□ -0.41
Lmx1bO88609 AC139350.3-201ENSMUST00000226151 420 ntBASIC12.49□□□□□ -0.41
Lmx1bO88609 Ifitm3-201ENSMUST00000026565 678 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Lmx1bO88609 Tmem219-201ENSMUST00000032926 941 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Lmx1bO88609 Slc39a3-201ENSMUST00000059551 3680 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Lmx1bO88609 E130317F20Rik-202ENSMUST00000217802 3420 ntBASIC12.49□□□□□ -0.41
Lmx1bO88609 Ubqln2-201ENSMUST00000060714 3344 ntAPPRIS P1 BASIC12.49□□□□□ -0.41
Lmx1bO88609 Spock1-205ENSMUST00000187852 3113 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Lmx1bO88609 Nr1d1-201ENSMUST00000064941 2721 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Lmx1bO88609 Pprc1-202ENSMUST00000099392 3956 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Lmx1bO88609 Bmp4-201ENSMUST00000074077 2064 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Lmx1bO88609 Spidr-201ENSMUST00000040248 3279 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Lmx1bO88609 Epsti1-201ENSMUST00000022591 1870 ntAPPRIS P2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Lmx1bO88609 Olfml2a-201ENSMUST00000057279 5579 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Lmx1bO88609 Tmem211-201ENSMUST00000086615 1827 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Lmx1bO88609 Kif7-204ENSMUST00000184137 4093 ntAPPRIS P3 TSL 5 BASIC12.48□□□□□ -0.41
Lmx1bO88609 Fxyd3-205ENSMUST00000167369 2894 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Lmx1bO88609 Tial1-203ENSMUST00000106228 2835 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Lmx1bO88609 Txnrd3-201ENSMUST00000000828 2836 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Lmx1bO88609 Rnf123-214ENSMUST00000162355 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Lmx1bO88609 Nup62-203ENSMUST00000207103 2414 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Lmx1bO88609 Dab1-203ENSMUST00000106830 5278 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Lmx1bO88609 Mme-206ENSMUST00000194150 3345 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Lmx1bO88609 Jakmip1-201ENSMUST00000043794 2383 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Lmx1bO88609 Elf4-202ENSMUST00000114958 6088 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Lmx1bO88609 Srr-204ENSMUST00000121738 3183 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Lmx1bO88609 Urm1-201ENSMUST00000091142 2196 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Lmx1bO88609 Boll-202ENSMUST00000114423 1106 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Lmx1bO88609 Gm11478-201ENSMUST00000117851 599 ntBASIC12.48□□□□□ -0.41
Lmx1bO88609 Gm20036-201ENSMUST00000177547 844 ntTSL 3 BASIC12.48□□□□□ -0.41
Lmx1bO88609 Gm21887-201ENSMUST00000178789 441 ntAPPRIS ALT2 TSL 5 BASIC12.48□□□□□ -0.41
Lmx1bO88609 Rnf2-203ENSMUST00000186415 1106 ntTSL 5 BASIC12.48□□□□□ -0.41
Lmx1bO88609 Ighv5-13-201ENSMUST00000193550 290 ntBASIC12.48□□□□□ -0.41
Lmx1bO88609 Prss38-201ENSMUST00000061481 1243 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Lmx1bO88609 Rpl13a-ps1-201ENSMUST00000071866 612 ntAPPRIS P1 BASIC12.48□□□□□ -0.41
Lmx1bO88609 Gm8225-201ENSMUST00000090257 879 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Lmx1bO88609 Dmkn-205ENSMUST00000165887 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Lmx1bO88609 Aim2-202ENSMUST00000147604 2839 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
Lmx1bO88609 Pfkfb3-205ENSMUST00000114845 1971 ntTSL 5 BASIC12.48□□□□□ -0.41
Lmx1bO88609 Tcf4-253ENSMUST00000202610 1959 ntTSL 5 BASIC12.48□□□□□ -0.41
Lmx1bO88609 Gnl3-201ENSMUST00000037739 1947 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Lmx1bO88609 Prrg3-203ENSMUST00000170096 3408 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Lmx1bO88609 Zfp574-202ENSMUST00000179556 4140 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Lmx1bO88609 Prss23-201ENSMUST00000041761 3228 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Lmx1bO88609 Apln-201ENSMUST00000039026 3149 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Lmx1bO88609 Zswim8-204ENSMUST00000223840 5674 ntAPPRIS ALT2 BASIC12.48□□□□□ -0.41
Lmx1bO88609 Gm2762-202ENSMUST00000201517 2339 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Lmx1bO88609 Pip5k1c-210ENSMUST00000163075 4208 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Lmx1bO88609 Rab18-201ENSMUST00000097680 2257 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 38.9 ms