Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Pbx3-202ENSMUST00000113132 2734 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Prpf40aQ9R1C7 Txnrd3-201ENSMUST00000000828 2836 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Prpf40aQ9R1C7 Tmub2-205ENSMUST00000156326 2249 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Prpf40aQ9R1C7 Gm2420-202ENSMUST00000202224 2249 ntBASIC15.21■□□□□ 0.03
Prpf40aQ9R1C7 Gm45667-201ENSMUST00000210380 1316 ntBASIC15.21■□□□□ 0.03
Prpf40aQ9R1C7 Gm13387-202ENSMUST00000131147 2646 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Prpf40aQ9R1C7 Tyw1-203ENSMUST00000100662 1867 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Prpf40aQ9R1C7 Capns2-201ENSMUST00000104947 1005 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
Prpf40aQ9R1C7 Aqp10-ps-201ENSMUST00000199555 611 ntBASIC15.21■□□□□ 0.03
Prpf40aQ9R1C7 Gstp2-201ENSMUST00000042700 770 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Prpf40aQ9R1C7 Gcat-201ENSMUST00000006544 2365 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Prpf40aQ9R1C7 Gm8334-201ENSMUST00000112755 1662 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
Prpf40aQ9R1C7 Chit1-201ENSMUST00000086475 1688 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Prpf40aQ9R1C7 Gm30238-201ENSMUST00000195528 2603 ntBASIC15.21■□□□□ 0.03
Prpf40aQ9R1C7 Zfp109-201ENSMUST00000037448 1935 ntAPPRIS P2 TSL 5 BASIC15.21■□□□□ 0.02
Prpf40aQ9R1C7 Nrp2-203ENSMUST00000075144 6723 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
Prpf40aQ9R1C7 Gtf2ird1-208ENSMUST00000167084 3283 ntTSL 5 BASIC15.21■□□□□ 0.02
Prpf40aQ9R1C7 Tmed5-202ENSMUST00000061203 2194 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
Prpf40aQ9R1C7 Rapsn-203ENSMUST00000111446 1458 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Prpf40aQ9R1C7 Cldn14-201ENSMUST00000050962 1457 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Prpf40aQ9R1C7 Klk7-201ENSMUST00000032955 1895 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Prpf40aQ9R1C7 Mlxip-201ENSMUST00000068237 7303 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Prpf40aQ9R1C7 Vars-201ENSMUST00000087315 4137 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Prpf40aQ9R1C7 Rasgef1c-202ENSMUST00000093141 2120 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Prpf40aQ9R1C7 Gm12626-201ENSMUST00000117339 1983 ntBASIC15.2■□□□□ 0.02
Prpf40aQ9R1C7 Gm12623-201ENSMUST00000119849 1983 ntBASIC15.2■□□□□ 0.02
Prpf40aQ9R1C7 Ext1-201ENSMUST00000077273 7663 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Prpf40aQ9R1C7 Krt18-201ENSMUST00000023803 1400 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Prpf40aQ9R1C7 Acox3-204ENSMUST00000114238 2825 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Prpf40aQ9R1C7 Tspan12-202ENSMUST00000120965 2157 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Prpf40aQ9R1C7 Ccdc151-201ENSMUST00000044926 2197 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
Prpf40aQ9R1C7 Gm15440-201ENSMUST00000110042 1231 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
Prpf40aQ9R1C7 Gm7820-201ENSMUST00000121012 1052 ntBASIC15.2■□□□□ 0.02
Prpf40aQ9R1C7 Faap20-210ENSMUST00000178473 1076 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
Prpf40aQ9R1C7 Naxd-205ENSMUST00000178721 1108 ntTSL 5 BASIC15.2■□□□□ 0.02
Prpf40aQ9R1C7 Mir7023-201ENSMUST00000185093 64 ntBASIC15.2■□□□□ 0.02
Prpf40aQ9R1C7 Gm28196-201ENSMUST00000187719 640 ntBASIC15.2■□□□□ 0.02
Prpf40aQ9R1C7 Gm30191-201ENSMUST00000205501 647 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
Prpf40aQ9R1C7 Gm30934-201ENSMUST00000215803 815 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Prpf40aQ9R1C7 Gm10747-201ENSMUST00000217799 1014 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Prpf40aQ9R1C7 Apobec2-201ENSMUST00000046549 1218 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Prpf40aQ9R1C7 Ifng-201ENSMUST00000068592 1208 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Prpf40aQ9R1C7 Hist1h2aa-201ENSMUST00000072391 390 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
Prpf40aQ9R1C7 Pnck-201ENSMUST00000002087 1536 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Prpf40aQ9R1C7 Rbm34-201ENSMUST00000045994 3424 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Prpf40aQ9R1C7 Mbp-205ENSMUST00000091789 4797 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Prpf40aQ9R1C7 Samd4b-204ENSMUST00000208199 4391 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
Prpf40aQ9R1C7 Fam57b-202ENSMUST00000098032 1894 ntTSL 5 BASIC15.2■□□□□ 0.02
Prpf40aQ9R1C7 Noct-203ENSMUST00000167780 2992 ntAPPRIS P2 TSL 5 BASIC15.2■□□□□ 0.02
Prpf40aQ9R1C7 Zbtb45-202ENSMUST00000172240 2722 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Prpf40aQ9R1C7 Slc38a10-204ENSMUST00000103018 4578 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
Prpf40aQ9R1C7 Utp4-201ENSMUST00000047629 2232 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Prpf40aQ9R1C7 Pbx2-203ENSMUST00000173328 1990 ntTSL 2 BASIC15.2■□□□□ 0.02
Prpf40aQ9R1C7 Irak1-206ENSMUST00000114354 3835 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Prpf40aQ9R1C7 Srrm1-203ENSMUST00000105861 3797 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
Prpf40aQ9R1C7 Plch2-208ENSMUST00000145662 1818 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Prpf40aQ9R1C7 9130008F23Rik-201ENSMUST00000068258 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Prpf40aQ9R1C7 Paf1-201ENSMUST00000003529 2003 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Prpf40aQ9R1C7 Tnpo2-201ENSMUST00000093360 4863 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Prpf40aQ9R1C7 AC124751.1-201ENSMUST00000222716 1408 ntBASIC15.19■□□□□ 0.02
Prpf40aQ9R1C7 Gars-201ENSMUST00000003572 2380 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Prpf40aQ9R1C7 Slc7a7-209ENSMUST00000226753 2126 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
Prpf40aQ9R1C7 Ces1h-201ENSMUST00000145041 1870 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
Prpf40aQ9R1C7 Zfp444-204ENSMUST00000108567 5104 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Prpf40aQ9R1C7 Tpk1-201ENSMUST00000067888 2671 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Prpf40aQ9R1C7 Gm26576-201ENSMUST00000181018 1977 ntTSL 5 BASIC15.19■□□□□ 0.02
Prpf40aQ9R1C7 Ppdpf-202ENSMUST00000108841 689 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Prpf40aQ9R1C7 Rnd1-203ENSMUST00000120997 856 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Prpf40aQ9R1C7 Tex30-206ENSMUST00000133677 935 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Prpf40aQ9R1C7 3110053B16Rik-204ENSMUST00000145605 575 ntBASIC15.19■□□□□ 0.02
Prpf40aQ9R1C7 Baiap2l2-205ENSMUST00000170955 1058 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Prpf40aQ9R1C7 Gm37596-201ENSMUST00000193565 1021 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
Prpf40aQ9R1C7 Mcee-203ENSMUST00000206194 532 ntTSL 2 BASIC15.19■□□□□ 0.02
Prpf40aQ9R1C7 Gm9063-201ENSMUST00000223299 582 ntBASIC15.19■□□□□ 0.02
Prpf40aQ9R1C7 AC154806.6-201ENSMUST00000228192 202 ntBASIC15.19■□□□□ 0.02
Prpf40aQ9R1C7 Dctn6-201ENSMUST00000033913 1249 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Prpf40aQ9R1C7 Hes5-201ENSMUST00000049621 1273 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Prpf40aQ9R1C7 Cnga3-203ENSMUST00000194195 2083 ntAPPRIS P3 TSL 5 BASIC15.19■□□□□ 0.02
Prpf40aQ9R1C7 Jaml-204ENSMUST00000215880 1704 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Prpf40aQ9R1C7 Ubc-202ENSMUST00000136312 2618 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Prpf40aQ9R1C7 Ntrk2-209ENSMUST00000225950 2640 ntBASIC15.19■□□□□ 0.02
Prpf40aQ9R1C7 Trim80-201ENSMUST00000093914 1934 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Prpf40aQ9R1C7 Gm11405-201ENSMUST00000118689 1556 ntBASIC15.19■□□□□ 0.02
Prpf40aQ9R1C7 Prrx1-204ENSMUST00000174397 6527 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Prpf40aQ9R1C7 Prn-201ENSMUST00000124100 2132 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
Prpf40aQ9R1C7 Rdh10-201ENSMUST00000027053 3587 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Prpf40aQ9R1C7 1810014B01Rik-201ENSMUST00000181587 1661 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Prpf40aQ9R1C7 Prss23-201ENSMUST00000041761 3228 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Prpf40aQ9R1C7 4632404H12Rik-201ENSMUST00000038450 2791 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Prpf40aQ9R1C7 Olfr533-203ENSMUST00000215308 2345 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
Prpf40aQ9R1C7 Gm5639-201ENSMUST00000122305 2403 ntBASIC15.18■□□□□ 0.02
Prpf40aQ9R1C7 Rbm47-201ENSMUST00000094756 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Prpf40aQ9R1C7 Lrrc8d-201ENSMUST00000060531 3923 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Prpf40aQ9R1C7 Arhgap4-204ENSMUST00000114406 2749 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Prpf40aQ9R1C7 Susd2-201ENSMUST00000077610 2275 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Prpf40aQ9R1C7 Zfp57-201ENSMUST00000069250 1749 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
Prpf40aQ9R1C7 Fam53b-204ENSMUST00000106165 1232 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Prpf40aQ9R1C7 Fam53b-205ENSMUST00000106166 1270 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Prpf40aQ9R1C7 Apoo-203ENSMUST00000113897 1218 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Prpf40aQ9R1C7 1700042O10Rik-201ENSMUST00000151032 1075 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 60.1 ms