Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Atad3aos-201ENSMUST00000067628 971 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Lima1Q9ERG0 G430095P16Rik-201ENSMUST00000098571 721 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Lima1Q9ERG0 Srsf1-205ENSMUST00000139129 5362 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Lima1Q9ERG0 Rnf10-202ENSMUST00000112096 3112 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
Lima1Q9ERG0 Paox-201ENSMUST00000026537 4655 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Lima1Q9ERG0 Rpusd2-201ENSMUST00000028796 2706 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Lima1Q9ERG0 Edrf1-202ENSMUST00000128901 4380 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
Lima1Q9ERG0 Rab15-201ENSMUST00000021459 3158 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Lima1Q9ERG0 Gm28386-201ENSMUST00000189147 1849 ntBASIC13.64□□□□□ -0.23
Lima1Q9ERG0 Gas7-201ENSMUST00000041611 2968 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Lima1Q9ERG0 Hk1-202ENSMUST00000099691 4278 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Lima1Q9ERG0 Gm42934-201ENSMUST00000196920 1345 ntBASIC13.64□□□□□ -0.23
Lima1Q9ERG0 Gm7002-201ENSMUST00000221386 2165 ntBASIC13.64□□□□□ -0.23
Lima1Q9ERG0 Fam46a-201ENSMUST00000034802 5479 ntAPPRIS P3 TSL 3 BASIC13.63□□□□□ -0.23
Lima1Q9ERG0 Efr3a-205ENSMUST00000173858 2848 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Lima1Q9ERG0 Atp9b-213ENSMUST00000225980 5150 ntAPPRIS P2 BASIC13.63□□□□□ -0.23
Lima1Q9ERG0 Pik3cd-205ENSMUST00000118704 4894 ntAPPRIS ALT1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Lima1Q9ERG0 4931440F15Rik-201ENSMUST00000104962 3274 ntAPPRIS P1 BASIC13.63□□□□□ -0.23
Lima1Q9ERG0 Cacna2d2-208ENSMUST00000170737 5332 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Lima1Q9ERG0 Rad23b-201ENSMUST00000030134 3810 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Lima1Q9ERG0 Myl6-202ENSMUST00000217733 1668 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Lima1Q9ERG0 Cradd-201ENSMUST00000053594 1661 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Lima1Q9ERG0 Arfgap1-203ENSMUST00000108860 2326 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Lima1Q9ERG0 Trp73-201ENSMUST00000097762 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Lima1Q9ERG0 Pqlc2-202ENSMUST00000105801 2756 ntAPPRIS ALT2 TSL 2 BASIC13.63□□□□□ -0.23
Lima1Q9ERG0 Mark2-215ENSMUST00000168872 2124 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
Lima1Q9ERG0 Coq6-203ENSMUST00000110278 1354 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
Lima1Q9ERG0 Aig1-202ENSMUST00000105534 617 ntTSL 5 BASIC13.63□□□□□ -0.23
Lima1Q9ERG0 Dnajc8-205ENSMUST00000105939 746 ntTSL 5 BASIC13.63□□□□□ -0.23
Lima1Q9ERG0 Stra8-202ENSMUST00000114997 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Lima1Q9ERG0 Crybb3-202ENSMUST00000117143 749 ntAPPRIS P1 TSL 3 BASIC13.63□□□□□ -0.23
Lima1Q9ERG0 Gm2810-201ENSMUST00000118681 990 ntBASIC13.63□□□□□ -0.23
Lima1Q9ERG0 Gm11745-201ENSMUST00000121669 448 ntBASIC13.63□□□□□ -0.23
Lima1Q9ERG0 Gm13431-203ENSMUST00000147012 388 ntTSL 2 BASIC13.63□□□□□ -0.23
Lima1Q9ERG0 Psmb1-201ENSMUST00000014913 1036 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Lima1Q9ERG0 1700021F07Rik-201ENSMUST00000029023 646 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Lima1Q9ERG0 Ndufb6-201ENSMUST00000095128 659 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Lima1Q9ERG0 Lsmem1-201ENSMUST00000095760 1213 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Lima1Q9ERG0 Lrif1-202ENSMUST00000098751 929 ntTSL 2 BASIC13.63□□□□□ -0.23
Lima1Q9ERG0 Pla2g4c-204ENSMUST00000167232 2154 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
Lima1Q9ERG0 Chrdl1-203ENSMUST00000112878 4050 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
Lima1Q9ERG0 Nkain3-201ENSMUST00000102998 3098 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Lima1Q9ERG0 Gm9347-201ENSMUST00000211473 1607 ntBASIC13.63□□□□□ -0.23
Lima1Q9ERG0 Noto-201ENSMUST00000089578 1602 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Lima1Q9ERG0 Gzf1-201ENSMUST00000028928 4232 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Lima1Q9ERG0 Hnrnpa2b1-210ENSMUST00000204188 1518 ntTSL 5 BASIC13.63□□□□□ -0.23
Lima1Q9ERG0 Asb10-201ENSMUST00000048302 2327 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Lima1Q9ERG0 Gm2109-201ENSMUST00000189326 1409 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Lima1Q9ERG0 Igfals-201ENSMUST00000050714 2111 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Lima1Q9ERG0 Coq10a-205ENSMUST00000220027 1307 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
Lima1Q9ERG0 Wdr13-205ENSMUST00000130832 4374 ntTSL 5 BASIC13.62□□□□□ -0.23
Lima1Q9ERG0 Fam53b-201ENSMUST00000065371 5052 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Lima1Q9ERG0 Top1mt-201ENSMUST00000000958 1903 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Lima1Q9ERG0 Pds5b-201ENSMUST00000016569 7417 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
Lima1Q9ERG0 Gm45638-201ENSMUST00000211507 2878 ntBASIC13.62□□□□□ -0.23
Lima1Q9ERG0 Gnb4-201ENSMUST00000108234 2510 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Lima1Q9ERG0 Osbpl8-202ENSMUST00000105275 7204 ntAPPRIS ALT1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Lima1Q9ERG0 Nfatc2ip-201ENSMUST00000075671 3388 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Lima1Q9ERG0 Ntrk2-204ENSMUST00000224259 3049 ntBASIC13.62□□□□□ -0.23
Lima1Q9ERG0 Esr2-201ENSMUST00000076634 3288 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Lima1Q9ERG0 Dido1-207ENSMUST00000130986 4898 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Lima1Q9ERG0 Vrtn-202ENSMUST00000166772 3098 ntAPPRIS P1 TSL 3 BASIC13.62□□□□□ -0.23
Lima1Q9ERG0 Alx1-201ENSMUST00000040859 2493 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Lima1Q9ERG0 Gnaz-202ENSMUST00000159991 3331 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Lima1Q9ERG0 Hoxa7-202ENSMUST00000134367 807 ntTSL 5 BASIC13.62□□□□□ -0.23
Lima1Q9ERG0 Rprl2-201ENSMUST00000157150 290 ntBASIC13.62□□□□□ -0.23
Lima1Q9ERG0 Slc12a5-208ENSMUST00000202479 1202 ntTSL 5 BASIC13.62□□□□□ -0.23
Lima1Q9ERG0 Gm44123-201ENSMUST00000204662 577 ntTSL 5 BASIC13.62□□□□□ -0.23
Lima1Q9ERG0 Msantd1-204ENSMUST00000212362 798 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
Lima1Q9ERG0 March3-201ENSMUST00000035278 860 ntAPPRIS P1 TSL 3 BASIC13.62□□□□□ -0.23
Lima1Q9ERG0 Gtpbp10-201ENSMUST00000088842 941 ntTSL 5 BASIC13.62□□□□□ -0.23
Lima1Q9ERG0 Crxos-201ENSMUST00000098801 934 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Lima1Q9ERG0 AC158633.2-201ENSMUST00000222959 6046 ntTSL 5 BASIC13.62□□□□□ -0.23
Lima1Q9ERG0 Gm39377-201ENSMUST00000214587 2533 ntTSL 5 BASIC13.62□□□□□ -0.23
Lima1Q9ERG0 Plcd3-201ENSMUST00000103077 3023 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Lima1Q9ERG0 Grin1-204ENSMUST00000114310 4276 ntTSL 5 BASIC13.62□□□□□ -0.23
Lima1Q9ERG0 Agpat1-202ENSMUST00000114140 1941 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Lima1Q9ERG0 Ppp4r3b-202ENSMUST00000102856 2410 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Lima1Q9ERG0 Nrd1-202ENSMUST00000102736 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Lima1Q9ERG0 Clcn6-201ENSMUST00000030879 3306 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Lima1Q9ERG0 Pltp-201ENSMUST00000059954 1809 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Lima1Q9ERG0 Adam22-207ENSMUST00000115388 9161 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
Lima1Q9ERG0 Tsku-204ENSMUST00000165901 2514 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Lima1Q9ERG0 Gm5422-202ENSMUST00000216161 2928 ntTSL 5 BASIC13.61□□□□□ -0.23
Lima1Q9ERG0 BC026585-201ENSMUST00000046743 1618 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Lima1Q9ERG0 Tspyl3-201ENSMUST00000099194 3072 ntAPPRIS P1 BASIC13.61□□□□□ -0.23
Lima1Q9ERG0 Arhgap28-201ENSMUST00000024840 5322 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Lima1Q9ERG0 Retreg1-202ENSMUST00000110438 1526 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Lima1Q9ERG0 Nfic-207ENSMUST00000221817 1531 ntTSL 5 BASIC13.61□□□□□ -0.23
Lima1Q9ERG0 Cnih4-204ENSMUST00000134115 3268 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Lima1Q9ERG0 Zfp853-202ENSMUST00000212355 2871 ntAPPRIS P5 TSL 5 BASIC13.61□□□□□ -0.23
Lima1Q9ERG0 Tmem51os1-203ENSMUST00000150202 1667 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Lima1Q9ERG0 Trav3-1-201ENSMUST00000103569 385 ntAPPRIS P1 BASIC13.61□□□□□ -0.23
Lima1Q9ERG0 Trav3-4-201ENSMUST00000103670 458 ntAPPRIS P1 BASIC13.61□□□□□ -0.23
Lima1Q9ERG0 Mir1895-201ENSMUST00000122615 79 ntBASIC13.61□□□□□ -0.23
Lima1Q9ERG0 Mmab-203ENSMUST00000123256 1277 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Lima1Q9ERG0 Crem-221ENSMUST00000142690 1256 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Lima1Q9ERG0 Gm20444-201ENSMUST00000174014 648 ntTSL 3 BASIC13.61□□□□□ -0.23
Lima1Q9ERG0 Gm26768-201ENSMUST00000181097 966 ntTSL 5 BASIC13.61□□□□□ -0.23
Lima1Q9ERG0 Gm29683-202ENSMUST00000208511 720 ntTSL 3 BASIC13.61□□□□□ -0.23
Retrieved 100 of 76,532 protein–RNA pairs in 25.8 ms