Protein–RNA interactions for Protein: Q8BX13

Ube3d, E3 ubiquitin-protein ligase E3D, mousemouse

Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube3dQ8BX13 Iah1-204ENSMUST00000223345 1890 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Ube3dQ8BX13 Clic6-201ENSMUST00000023670 3758 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Ube3dQ8BX13 Gm34376-201ENSMUST00000218529 2107 ntTSL 5 BASIC12.29□□□□□ -0.44
Ube3dQ8BX13 Kcnk16-202ENSMUST00000225596 2127 ntBASIC12.29□□□□□ -0.44
Ube3dQ8BX13 Cyp11a1-201ENSMUST00000034874 2120 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Ube3dQ8BX13 Sirt3-202ENSMUST00000106048 1416 ntAPPRIS P2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Ube3dQ8BX13 Cabp7-201ENSMUST00000009219 2628 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Ube3dQ8BX13 Uimc1-202ENSMUST00000099496 1678 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Ube3dQ8BX13 5730409E04Rik-202ENSMUST00000164362 2855 ntAPPRIS P1 TSL 3 BASIC12.29□□□□□ -0.44
Ube3dQ8BX13 Kmt5c-203ENSMUST00000108583 2177 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Ube3dQ8BX13 Spata5-209ENSMUST00000198968 2916 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Ube3dQ8BX13 Shmt2-206ENSMUST00000219239 2238 ntAPPRIS ALT1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Ube3dQ8BX13 Ap3d1-201ENSMUST00000020420 4805 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Ube3dQ8BX13 Xrcc2-204ENSMUST00000134972 464 ntTSL 3 BASIC12.29□□□□□ -0.44
Ube3dQ8BX13 Gm5866-201ENSMUST00000177881 973 ntBASIC12.29□□□□□ -0.44
Ube3dQ8BX13 1010001B22Rik-201ENSMUST00000181488 589 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Ube3dQ8BX13 Gm26808-201ENSMUST00000181569 411 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Ube3dQ8BX13 Mir124-2hg-206ENSMUST00000189754 525 ntTSL 3 BASIC12.29□□□□□ -0.44
Ube3dQ8BX13 C330022C24Rik-201ENSMUST00000190581 1077 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Ube3dQ8BX13 Gm42787-201ENSMUST00000200879 1164 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Ube3dQ8BX13 AC153961.1-201ENSMUST00000217760 385 ntBASIC12.29□□□□□ -0.44
Ube3dQ8BX13 Gm18041-201ENSMUST00000218210 618 ntBASIC12.29□□□□□ -0.44
Ube3dQ8BX13 Gm16476-201ENSMUST00000221544 139 ntBASIC12.29□□□□□ -0.44
Ube3dQ8BX13 Plekha1-202ENSMUST00000075181 2301 ntAPPRIS P2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Ube3dQ8BX13 Tcf12-202ENSMUST00000183404 6299 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
Ube3dQ8BX13 Ank3-223ENSMUST00000182557 1569 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Ube3dQ8BX13 Procr-201ENSMUST00000029140 1597 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Ube3dQ8BX13 Prickle3-203ENSMUST00000129662 2376 ntAPPRIS ALT2 TSL 2 BASIC12.29□□□□□ -0.44
Ube3dQ8BX13 Chd1-202ENSMUST00000024627 7916 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Ube3dQ8BX13 4833439L19Rik-201ENSMUST00000026989 2727 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Ube3dQ8BX13 Nfatc4-201ENSMUST00000024179 3267 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
Ube3dQ8BX13 Pde8a-201ENSMUST00000026672 3802 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Ube3dQ8BX13 Oxa1l-201ENSMUST00000000985 2538 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Ube3dQ8BX13 Acap2-201ENSMUST00000058033 6493 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Ube3dQ8BX13 Myo1d-201ENSMUST00000041065 5354 ntAPPRIS P1 TSL 5 BASIC12.29□□□□□ -0.44
Ube3dQ8BX13 Slc25a15-201ENSMUST00000033871 3430 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Ube3dQ8BX13 Hspa8-202ENSMUST00000117557 2019 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Ube3dQ8BX13 Ptbp3-205ENSMUST00000148331 2016 ntAPPRIS ALT2 TSL 5 BASIC12.28□□□□□ -0.44
Ube3dQ8BX13 Cdca5-201ENSMUST00000025704 2024 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Ube3dQ8BX13 Mtif3-202ENSMUST00000066675 4927 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Ube3dQ8BX13 Ldoc1-201ENSMUST00000075983 1459 ntAPPRIS P1 BASIC12.28□□□□□ -0.44
Ube3dQ8BX13 Prkcq-201ENSMUST00000028118 3583 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Ube3dQ8BX13 Pomt2-201ENSMUST00000037788 5064 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Ube3dQ8BX13 F2r-201ENSMUST00000059193 3336 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Ube3dQ8BX13 Tcf4-248ENSMUST00000202354 2120 ntTSL 5 BASIC12.28□□□□□ -0.44
Ube3dQ8BX13 Tcf4-257ENSMUST00000202772 2125 ntTSL 5 BASIC12.28□□□□□ -0.44
Ube3dQ8BX13 Tmed5-202ENSMUST00000061203 2194 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Ube3dQ8BX13 Snx22-201ENSMUST00000044711 2543 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Ube3dQ8BX13 Ank-201ENSMUST00000022875 3498 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Ube3dQ8BX13 Gm4204-201ENSMUST00000110798 1231 ntBASIC12.28□□□□□ -0.44
Ube3dQ8BX13 Ntan1-202ENSMUST00000115805 984 ntTSL 3 BASIC12.28□□□□□ -0.44
Ube3dQ8BX13 Gm15653-201ENSMUST00000119247 907 ntBASIC12.28□□□□□ -0.44
Ube3dQ8BX13 Rpl17-ps10-201ENSMUST00000119383 555 ntBASIC12.28□□□□□ -0.44
Ube3dQ8BX13 Rpl17-ps9-201ENSMUST00000119541 555 ntBASIC12.28□□□□□ -0.44
Ube3dQ8BX13 Rpl17-ps4-201ENSMUST00000120241 555 ntBASIC12.28□□□□□ -0.44
Ube3dQ8BX13 D11Bhm181e-201ENSMUST00000122252 282 ntBASIC12.28□□□□□ -0.44
Ube3dQ8BX13 Gm15487-201ENSMUST00000122373 465 ntBASIC12.28□□□□□ -0.44
Ube3dQ8BX13 Mansc4-202ENSMUST00000123367 542 ntAPPRIS ALT2 TSL 2 BASIC12.28□□□□□ -0.44
Ube3dQ8BX13 Kansl3-206ENSMUST00000187628 336 ntTSL 5 BASIC12.28□□□□□ -0.44
Ube3dQ8BX13 Gm37117-201ENSMUST00000194238 589 ntTSL 5 BASIC12.28□□□□□ -0.44
Ube3dQ8BX13 1700028E10Rik-205ENSMUST00000202024 924 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Ube3dQ8BX13 Gm45453-201ENSMUST00000211758 853 ntBASIC12.28□□□□□ -0.44
Ube3dQ8BX13 Gm46209-201ENSMUST00000217912 553 ntBASIC12.28□□□□□ -0.44
Ube3dQ8BX13 Lce1d-201ENSMUST00000029524 678 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Ube3dQ8BX13 Mesp1-201ENSMUST00000032760 1275 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Ube3dQ8BX13 Reep6-201ENSMUST00000040081 850 ntTSL 5 BASIC12.28□□□□□ -0.44
Ube3dQ8BX13 Tmem38b-201ENSMUST00000030127 2862 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Ube3dQ8BX13 Krt20-201ENSMUST00000017743 1927 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Ube3dQ8BX13 Tjap1-202ENSMUST00000164342 2559 ntAPPRIS P2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Ube3dQ8BX13 Metap2-206ENSMUST00000180840 2551 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Ube3dQ8BX13 Ptpn11-202ENSMUST00000100770 5599 ntAPPRIS ALT1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Ube3dQ8BX13 Pak4-201ENSMUST00000032823 2611 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Ube3dQ8BX13 Gpr157-201ENSMUST00000094451 4900 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Ube3dQ8BX13 Trim68-205ENSMUST00000210855 2301 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Ube3dQ8BX13 Gm15816-201ENSMUST00000141930 1688 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Ube3dQ8BX13 Pcdha6-202ENSMUST00000193777 5367 ntAPPRIS P2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Ube3dQ8BX13 Slc37a1-201ENSMUST00000165149 3354 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Ube3dQ8BX13 Gm36839-201ENSMUST00000222088 2093 ntTSL 5 BASIC12.28□□□□□ -0.44
Ube3dQ8BX13 Wdr70-201ENSMUST00000045766 2126 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Ube3dQ8BX13 Pex2-202ENSMUST00000071280 1777 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Ube3dQ8BX13 Cep97-202ENSMUST00000117468 2887 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Ube3dQ8BX13 Maged2-203ENSMUST00000112699 2183 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Ube3dQ8BX13 Hif1a-201ENSMUST00000021530 4724 ntAPPRIS P3 TSL 1 (best) BASIC12.28□□□□□ -0.44
Ube3dQ8BX13 Prss44-201ENSMUST00000098345 1838 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Ube3dQ8BX13 Gm45779-201ENSMUST00000212189 4064 ntBASIC12.27□□□□□ -0.44
Ube3dQ8BX13 Grk6-205ENSMUST00000224653 2976 ntBASIC12.27□□□□□ -0.44
Ube3dQ8BX13 Adgrg5-205ENSMUST00000166802 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.44
Ube3dQ8BX13 Gnpda2-201ENSMUST00000031117 1894 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.44
Ube3dQ8BX13 Cbl-206ENSMUST00000206147 3452 ntAPPRIS ALT2 TSL 5 BASIC12.27□□□□□ -0.44
Ube3dQ8BX13 Pcdh10-201ENSMUST00000166126 7081 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
Ube3dQ8BX13 Coq4-201ENSMUST00000028137 1991 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Ube3dQ8BX13 Srr-204ENSMUST00000121738 3183 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Ube3dQ8BX13 Cnnm2-202ENSMUST00000099373 3558 ntAPPRIS P4 TSL 1 (best) BASIC12.27□□□□□ -0.44
Ube3dQ8BX13 Gucy2e-202ENSMUST00000108664 4415 ntAPPRIS P1 TSL 5 BASIC12.27□□□□□ -0.44
Ube3dQ8BX13 C130012C08Rik-201ENSMUST00000194287 3665 ntBASIC12.27□□□□□ -0.45
Ube3dQ8BX13 Mapk7-202ENSMUST00000101085 3254 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Ube3dQ8BX13 Dnmt3b-204ENSMUST00000088976 4130 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Ube3dQ8BX13 Hk3-208ENSMUST00000153665 2945 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Ube3dQ8BX13 B9d1-201ENSMUST00000102657 817 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Ube3dQ8BX13 Gamt-202ENSMUST00000105363 988 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Retrieved 100 of 76,532 protein–RNA pairs in 35.2 ms