Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Gm44390-201ENSMUST00000197533 144 ntBASIC11.43□□□□□ -0.58
Hmgb3O54879 Gm44313-201ENSMUST00000198018 138 ntBASIC11.43□□□□□ -0.58
Hmgb3O54879 Gm44486-201ENSMUST00000198508 138 ntBASIC11.43□□□□□ -0.58
Hmgb3O54879 Gm44314-201ENSMUST00000199263 138 ntBASIC11.43□□□□□ -0.58
Hmgb3O54879 Gm44394-201ENSMUST00000199558 138 ntBASIC11.43□□□□□ -0.58
Hmgb3O54879 Gm44484-201ENSMUST00000199873 138 ntBASIC11.43□□□□□ -0.58
Hmgb3O54879 Gm44466-201ENSMUST00000200264 138 ntBASIC11.43□□□□□ -0.58
Hmgb3O54879 Gm44359-201ENSMUST00000200671 138 ntBASIC11.43□□□□□ -0.58
Hmgb3O54879 Etfb-201ENSMUST00000004729 893 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Hmgb3O54879 Psmd2-201ENSMUST00000007212 2961 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Hmgb3O54879 Pias3-203ENSMUST00000107077 2695 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Hmgb3O54879 Olfr533-203ENSMUST00000215308 2345 ntAPPRIS P1 TSL 5 BASIC11.43□□□□□ -0.58
Hmgb3O54879 Lsm14b-202ENSMUST00000058764 2566 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Hmgb3O54879 Evc2-201ENSMUST00000056365 4091 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Hmgb3O54879 BC003331-205ENSMUST00000111913 3273 ntAPPRIS P3 TSL 5 BASIC11.43□□□□□ -0.58
Hmgb3O54879 Gtf3c4-201ENSMUST00000037117 6941 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Hmgb3O54879 Gtse1-201ENSMUST00000170629 2721 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Hmgb3O54879 Akt2-ps-201ENSMUST00000120718 1449 ntBASIC11.43□□□□□ -0.58
Hmgb3O54879 Trim26-210ENSMUST00000179968 3203 ntAPPRIS ALT2 TSL 5 BASIC11.43□□□□□ -0.58
Hmgb3O54879 Atp9a-204ENSMUST00000109177 3456 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Hmgb3O54879 5830418P13Rik-201ENSMUST00000143564 2178 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Hmgb3O54879 Ltbp2-201ENSMUST00000002073 6769 ntAPPRIS ALT2 TSL 5 BASIC11.43□□□□□ -0.58
Hmgb3O54879 Golim4-208ENSMUST00000167078 2902 ntAPPRIS P3 TSL 1 (best) BASIC11.42□□□□□ -0.58
Hmgb3O54879 Gm34376-201ENSMUST00000218529 2107 ntTSL 5 BASIC11.42□□□□□ -0.58
Hmgb3O54879 Cd3d-201ENSMUST00000034602 1617 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Hmgb3O54879 Thnsl2-201ENSMUST00000074241 1821 ntAPPRIS P1 TSL 5 BASIC11.42□□□□□ -0.58
Hmgb3O54879 Pmm1-201ENSMUST00000023112 1300 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Hmgb3O54879 P4ha2-202ENSMUST00000093107 2263 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Hmgb3O54879 Duxf3-202ENSMUST00000176875 2025 ntAPPRIS P1 BASIC11.42□□□□□ -0.58
Hmgb3O54879 Nr1d1-201ENSMUST00000064941 2721 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Hmgb3O54879 Setdb1-203ENSMUST00000107171 4573 ntAPPRIS ALT2 TSL 1 (best) BASIC11.42□□□□□ -0.58
Hmgb3O54879 Gucy1a2-201ENSMUST00000115733 2243 ntAPPRIS P1 TSL 2 BASIC11.42□□□□□ -0.58
Hmgb3O54879 Tssc4-208ENSMUST00000208779 647 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Hmgb3O54879 Scamp5-203ENSMUST00000214256 1025 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Hmgb3O54879 Ndufs6-204ENSMUST00000223293 757 ntTSL 2 BASIC11.42□□□□□ -0.58
Hmgb3O54879 Sdhc-201ENSMUST00000081560 815 ntTSL 3 BASIC11.42□□□□□ -0.58
Hmgb3O54879 Spg7-202ENSMUST00000125975 2408 ntAPPRIS ALT2 TSL 5 BASIC11.42□□□□□ -0.58
Hmgb3O54879 Gpc5-201ENSMUST00000022707 1719 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Hmgb3O54879 Ildr1-202ENSMUST00000089618 2850 ntAPPRIS ALT2 TSL 1 (best) BASIC11.42□□□□□ -0.58
Hmgb3O54879 Arfgap1-205ENSMUST00000108862 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC11.42□□□□□ -0.58
Hmgb3O54879 Slc5a11-201ENSMUST00000033035 2396 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Hmgb3O54879 Xkr5-202ENSMUST00000095438 2838 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Hmgb3O54879 Maged2-204ENSMUST00000112700 2107 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Hmgb3O54879 Mecp2-203ENSMUST00000123362 1675 ntTSL 5 BASIC11.42□□□□□ -0.58
Hmgb3O54879 Gpr160-207ENSMUST00000166278 1689 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Hmgb3O54879 Chit1-201ENSMUST00000086475 1688 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Hmgb3O54879 Runx1-202ENSMUST00000113956 4738 ntAPPRIS P3 TSL 1 (best) BASIC11.42□□□□□ -0.58
Hmgb3O54879 Eml5-201ENSMUST00000065716 9482 ntTSL 5 BASIC11.42□□□□□ -0.58
Hmgb3O54879 Sirt4-202ENSMUST00000112067 1645 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Hmgb3O54879 Gja8-201ENSMUST00000062944 6940 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Hmgb3O54879 Usp10-210ENSMUST00000144458 3726 ntAPPRIS P3 TSL 1 (best) BASIC11.42□□□□□ -0.58
Hmgb3O54879 Il13ra1-201ENSMUST00000033418 3712 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Hmgb3O54879 AC122901.1-201ENSMUST00000214203 1790 ntBASIC11.41□□□□□ -0.58
Hmgb3O54879 Eno1b-201ENSMUST00000076155 1757 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Hmgb3O54879 Arhgef2-219ENSMUST00000176500 4492 ntAPPRIS ALT2 TSL 5 BASIC11.41□□□□□ -0.58
Hmgb3O54879 Slc52a3-204ENSMUST00000109861 2590 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Hmgb3O54879 A530013C23Rik-201ENSMUST00000130679 2555 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Hmgb3O54879 Fcgr1-201ENSMUST00000029748 2589 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Hmgb3O54879 Sez6l-201ENSMUST00000075387 6055 ntAPPRIS P3 TSL 1 (best) BASIC11.41□□□□□ -0.58
Hmgb3O54879 P2rx3-203ENSMUST00000111616 1315 ntTSL 5 BASIC11.41□□□□□ -0.58
Hmgb3O54879 Nat8f3-202ENSMUST00000168531 1347 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Hmgb3O54879 Rnase10-202ENSMUST00000164632 1521 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
Hmgb3O54879 Hsd3b7-203ENSMUST00000106272 1725 ntTSL 5 BASIC11.41□□□□□ -0.58
Hmgb3O54879 Il18r1-203ENSMUST00000167723 1919 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Hmgb3O54879 Sdha-201ENSMUST00000022062 2900 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Hmgb3O54879 Zfhx2-201ENSMUST00000036328 10397 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Hmgb3O54879 Slc22a20-201ENSMUST00000041827 1897 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Hmgb3O54879 Syt1-202ENSMUST00000105276 4820 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Hmgb3O54879 Ntf3-201ENSMUST00000050484 1483 ntAPPRIS P3 TSL 2 BASIC11.41□□□□□ -0.58
Hmgb3O54879 Urgcp-203ENSMUST00000118076 4208 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
Hmgb3O54879 Hist1h4n-201ENSMUST00000102979 430 ntAPPRIS P1 BASIC11.41□□□□□ -0.58
Hmgb3O54879 Hist1h4m-201ENSMUST00000104941 402 ntAPPRIS P1 BASIC11.41□□□□□ -0.58
Hmgb3O54879 Capns2-201ENSMUST00000104947 1005 ntAPPRIS P1 BASIC11.41□□□□□ -0.58
Hmgb3O54879 Nkain4-202ENSMUST00000108873 865 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
Hmgb3O54879 Mtif3-203ENSMUST00000110564 1257 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Hmgb3O54879 Mtif3-204ENSMUST00000110566 1134 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Hmgb3O54879 Npm3-ps1-201ENSMUST00000119728 528 ntBASIC11.41□□□□□ -0.58
Hmgb3O54879 Smim1-205ENSMUST00000131325 842 ntTSL 5 BASIC11.41□□□□□ -0.58
Hmgb3O54879 Cdpf1-203ENSMUST00000134631 786 ntAPPRIS P1 TSL 5 BASIC11.41□□□□□ -0.58
Hmgb3O54879 Rbm14-203ENSMUST00000180008 370 ntTSL 5 BASIC11.41□□□□□ -0.58
Hmgb3O54879 Gm15406-202ENSMUST00000202229 767 ntTSL 2 BASIC11.41□□□□□ -0.58
Hmgb3O54879 Fosb-206ENSMUST00000208446 1090 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Hmgb3O54879 Inmt-201ENSMUST00000003569 1077 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Hmgb3O54879 Ly6d-201ENSMUST00000040404 744 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Hmgb3O54879 Npm3-201ENSMUST00000070215 888 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Hmgb3O54879 Gm9754-201ENSMUST00000031305 3004 ntTSL 2 BASIC11.41□□□□□ -0.58
Hmgb3O54879 Cacna1s-204ENSMUST00000160641 6104 ntAPPRIS ALT2 TSL 5 BASIC11.41□□□□□ -0.58
Hmgb3O54879 Zhx2-201ENSMUST00000096430 4376 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Hmgb3O54879 Arhgap4-203ENSMUST00000114405 6299 ntAPPRIS ALT2 TSL 5 BASIC11.41□□□□□ -0.58
Hmgb3O54879 Mfge8-202ENSMUST00000107409 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
Hmgb3O54879 Zfp707-201ENSMUST00000109966 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
Hmgb3O54879 Sirt2-201ENSMUST00000072965 1843 ntAPPRIS P3 TSL 1 (best) BASIC11.41□□□□□ -0.58
Hmgb3O54879 Rims1-204ENSMUST00000097810 6362 ntAPPRIS ALT2 TSL 5 BASIC11.41□□□□□ -0.58
Hmgb3O54879 Dcaf11-204ENSMUST00000121622 2379 ntAPPRIS P2 TSL 5 BASIC11.41□□□□□ -0.58
Hmgb3O54879 Nfkb2-201ENSMUST00000073116 3054 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Hmgb3O54879 Cdc37l1-207ENSMUST00000225210 4163 ntAPPRIS ALT2 BASIC11.41□□□□□ -0.58
Hmgb3O54879 Ptpn2-201ENSMUST00000025420 1568 ntAPPRIS P3 TSL 1 (best) BASIC11.41□□□□□ -0.58
Hmgb3O54879 Sde2-201ENSMUST00000038091 3213 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Hmgb3O54879 Tbx4-201ENSMUST00000000096 3011 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Hmgb3O54879 Slc6a21-206ENSMUST00000210861 2838 ntAPPRIS P1 TSL 5 BASIC11.41□□□□□ -0.58
Retrieved 100 of 76,532 protein–RNA pairs in 183.1 ms