Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 2900005J15Rik-202ENSMUST00000171190 2025 ntBASIC18.36■□□□□ 0.53
Scn4aQ9ER60 AC169511.2-201ENSMUST00000226674 2063 ntBASIC18.36■□□□□ 0.53
Scn4aQ9ER60 Fbxl19-207ENSMUST00000206893 3449 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
Scn4aQ9ER60 Rapgefl1-202ENSMUST00000107479 4855 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
Scn4aQ9ER60 Susd1-201ENSMUST00000040166 3295 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Scn4aQ9ER60 Gm14149-201ENSMUST00000123048 1853 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Scn4aQ9ER60 Map3k21-201ENSMUST00000034316 5693 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Scn4aQ9ER60 1700034J05Rik-202ENSMUST00000111622 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Scn4aQ9ER60 Cadps-204ENSMUST00000177814 5461 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
Scn4aQ9ER60 Cspp1-202ENSMUST00000117415 1272 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Scn4aQ9ER60 Gm12899-201ENSMUST00000120565 551 ntBASIC18.36■□□□□ 0.53
Scn4aQ9ER60 Tspo2-205ENSMUST00000162481 473 ntTSL 5 BASIC18.36■□□□□ 0.53
Scn4aQ9ER60 Gm42067-201ENSMUST00000209642 647 ntTSL 2 BASIC18.36■□□□□ 0.53
Scn4aQ9ER60 CT485607.1-201ENSMUST00000216100 85 ntBASIC18.36■□□□□ 0.53
Scn4aQ9ER60 Fgfr1op2-201ENSMUST00000037836 687 ntTSL 3 BASIC18.36■□□□□ 0.53
Scn4aQ9ER60 Gm8894-201ENSMUST00000074642 666 ntBASIC18.36■□□□□ 0.53
Scn4aQ9ER60 Pjvk-201ENSMUST00000099986 1219 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Scn4aQ9ER60 Gm13812-201ENSMUST00000118061 1347 ntBASIC18.36■□□□□ 0.53
Scn4aQ9ER60 Gm13810-201ENSMUST00000118584 1347 ntBASIC18.36■□□□□ 0.53
Scn4aQ9ER60 Wbp4-201ENSMUST00000022601 3704 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Scn4aQ9ER60 Clvs2-201ENSMUST00000019920 2717 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Scn4aQ9ER60 Dnmt3l-208ENSMUST00000151242 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Scn4aQ9ER60 Cops4-201ENSMUST00000045993 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Scn4aQ9ER60 Vwa3b-202ENSMUST00000067178 1769 ntAPPRIS P5 TSL 2 BASIC18.36■□□□□ 0.53
Scn4aQ9ER60 Col4a3bp-203ENSMUST00000179226 3040 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Scn4aQ9ER60 Rcor1-201ENSMUST00000084968 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Scn4aQ9ER60 Specc1-210ENSMUST00000201723 2690 ntTSL 5 BASIC18.35■□□□□ 0.53
Scn4aQ9ER60 Map2k3os-201ENSMUST00000123544 1291 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Scn4aQ9ER60 Gm15852-201ENSMUST00000159701 915 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Scn4aQ9ER60 Mir7686-201ENSMUST00000200604 57 ntBASIC18.35■□□□□ 0.53
Scn4aQ9ER60 Gm33201-201ENSMUST00000204791 855 ntTSL 3 BASIC18.35■□□□□ 0.53
Scn4aQ9ER60 AC166051.1-201ENSMUST00000214313 210 ntBASIC18.35■□□□□ 0.53
Scn4aQ9ER60 Cipc-211ENSMUST00000191463 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Scn4aQ9ER60 Cyp2a12-201ENSMUST00000075552 1681 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Scn4aQ9ER60 Apol8-201ENSMUST00000070911 1838 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Scn4aQ9ER60 Fam227a-202ENSMUST00000109646 1896 ntTSL 5 BASIC18.35■□□□□ 0.53
Scn4aQ9ER60 Anxa4-201ENSMUST00000001187 2002 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Scn4aQ9ER60 Sema6d-204ENSMUST00000078621 6372 ntTSL 5 BASIC18.35■□□□□ 0.53
Scn4aQ9ER60 Mccc1-201ENSMUST00000029259 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Scn4aQ9ER60 Col9a3-203ENSMUST00000132527 3046 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
Scn4aQ9ER60 Cspg5-202ENSMUST00000196060 3790 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Scn4aQ9ER60 Nek3-202ENSMUST00000110730 2050 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
Scn4aQ9ER60 Gm36745-201ENSMUST00000213455 1594 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Scn4aQ9ER60 4930448A20Rik-201ENSMUST00000205988 1034 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Scn4aQ9ER60 Gm44772-201ENSMUST00000207623 1191 ntBASIC18.35■□□□□ 0.53
Scn4aQ9ER60 Ddo-207ENSMUST00000216830 806 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Scn4aQ9ER60 Rdh16f2-201ENSMUST00000092058 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Scn4aQ9ER60 Spns1-202ENSMUST00000119754 2001 ntTSL 5 BASIC18.34■□□□□ 0.53
Scn4aQ9ER60 Keap1-205ENSMUST00000194542 3151 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Scn4aQ9ER60 Gps1-202ENSMUST00000116305 1827 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Scn4aQ9ER60 Samd4-204ENSMUST00000125688 1773 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Scn4aQ9ER60 Slc35b3-202ENSMUST00000167513 1778 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
Scn4aQ9ER60 Gm7114-201ENSMUST00000190159 1789 ntBASIC18.34■□□□□ 0.53
Scn4aQ9ER60 Nmt2-202ENSMUST00000091504 1676 ntTSL 5 BASIC18.34■□□□□ 0.53
Scn4aQ9ER60 Zkscan3-203ENSMUST00000116434 2600 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Scn4aQ9ER60 Erf-201ENSMUST00000045847 3505 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Scn4aQ9ER60 Gm11801-201ENSMUST00000117807 746 ntBASIC18.34■□□□□ 0.53
Scn4aQ9ER60 Gm13736-201ENSMUST00000119272 253 ntBASIC18.34■□□□□ 0.53
Scn4aQ9ER60 Gm13492-201ENSMUST00000119772 665 ntBASIC18.34■□□□□ 0.53
Scn4aQ9ER60 Mup-ps26-201ENSMUST00000121751 202 ntBASIC18.34■□□□□ 0.53
Scn4aQ9ER60 Gm29292-201ENSMUST00000186169 766 ntTSL 3 BASIC18.34■□□□□ 0.53
Scn4aQ9ER60 4930523C07Rik-202ENSMUST00000097513 300 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
Scn4aQ9ER60 Ttc14-202ENSMUST00000108210 2684 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
Scn4aQ9ER60 Slc25a22-202ENSMUST00000106006 2277 ntTSL 5 BASIC18.34■□□□□ 0.53
Scn4aQ9ER60 Fscn1-201ENSMUST00000031565 2675 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Scn4aQ9ER60 Olfr288-202ENSMUST00000165379 2083 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.53
Scn4aQ9ER60 Shroom1-201ENSMUST00000018531 2630 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
Scn4aQ9ER60 Wdr31-201ENSMUST00000030087 1440 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
Scn4aQ9ER60 A630076J17Rik-201ENSMUST00000179399 1358 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Scn4aQ9ER60 Naga-201ENSMUST00000023088 1913 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Scn4aQ9ER60 Nppa-201ENSMUST00000103230 865 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Scn4aQ9ER60 Adamtsl1-204ENSMUST00000120678 977 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Scn4aQ9ER60 Taf9-201ENSMUST00000167256 1230 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.53
Scn4aQ9ER60 Gm17227-202ENSMUST00000170286 1016 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Scn4aQ9ER60 Rpl41-206ENSMUST00000177163 544 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.53
Scn4aQ9ER60 AC153505.1-201ENSMUST00000218819 1071 ntBASIC18.33■□□□□ 0.53
Scn4aQ9ER60 Gm46204-201ENSMUST00000219800 411 ntTSL 3 BASIC18.33■□□□□ 0.53
Scn4aQ9ER60 Tspan8-201ENSMUST00000035563 1244 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Scn4aQ9ER60 1700029I15Rik-201ENSMUST00000054316 364 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Scn4aQ9ER60 Gm9873-201ENSMUST00000063891 1097 ntBASIC18.33■□□□□ 0.53
Scn4aQ9ER60 Rimbp3-201ENSMUST00000169803 5787 ntAPPRIS P1 BASIC18.33■□□□□ 0.53
Scn4aQ9ER60 Rabep2-202ENSMUST00000106407 2234 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.53
Scn4aQ9ER60 Ptp4a1-202ENSMUST00000076587 2851 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Scn4aQ9ER60 Gm42901-201ENSMUST00000197735 3171 ntBASIC18.33■□□□□ 0.52
Scn4aQ9ER60 Yes1-205ENSMUST00000202543 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Scn4aQ9ER60 Mid1-215ENSMUST00000171433 2546 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
Scn4aQ9ER60 Rwdd3-205ENSMUST00000106467 1158 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Scn4aQ9ER60 Gm13609-201ENSMUST00000141023 589 ntTSL 3 BASIC18.33■□□□□ 0.52
Scn4aQ9ER60 Gm22138-201ENSMUST00000158748 128 ntBASIC18.33■□□□□ 0.52
Scn4aQ9ER60 Gm17231-202ENSMUST00000165858 663 ntTSL 5 BASIC18.33■□□□□ 0.52
Scn4aQ9ER60 Gm20535-201ENSMUST00000173157 1268 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Scn4aQ9ER60 Gm9358-201ENSMUST00000183067 927 ntBASIC18.33■□□□□ 0.52
Scn4aQ9ER60 Gm29083-201ENSMUST00000189205 733 ntTSL 3 BASIC18.33■□□□□ 0.52
Scn4aQ9ER60 Gm42779-201ENSMUST00000198807 406 ntBASIC18.33■□□□□ 0.52
Scn4aQ9ER60 Gng8-204ENSMUST00000205716 432 ntAPPRIS P1 TSL 3 BASIC18.33■□□□□ 0.52
Scn4aQ9ER60 1110017D15Rik-201ENSMUST00000030152 1114 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
Scn4aQ9ER60 Rmi2-201ENSMUST00000037913 3742 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Scn4aQ9ER60 Agpat3-203ENSMUST00000105388 3681 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
Scn4aQ9ER60 Gm15512-201ENSMUST00000137359 2257 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Scn4aQ9ER60 Tmem117-201ENSMUST00000080141 2781 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 38.8 ms