Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Prpf3-201ENSMUST00000015892 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Brf1Q8CFK2 Gm2155-201ENSMUST00000181581 1974 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Brf1Q8CFK2 Rbm42-201ENSMUST00000042726 1784 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Brf1Q8CFK2 Odf2-203ENSMUST00000113755 2305 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Brf1Q8CFK2 Bend7-201ENSMUST00000056914 2302 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
Brf1Q8CFK2 Msantd3-201ENSMUST00000061135 1589 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Brf1Q8CFK2 Gm45779-201ENSMUST00000212189 4064 ntBASIC16.69■□□□□ 0.26
Brf1Q8CFK2 Pcdh10-204ENSMUST00000193252 4638 ntAPPRIS ALT2 BASIC16.69■□□□□ 0.26
Brf1Q8CFK2 Tle3-201ENSMUST00000034820 4646 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Brf1Q8CFK2 Slc39a3-201ENSMUST00000059551 3680 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Brf1Q8CFK2 Itgb3-201ENSMUST00000021028 5784 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Brf1Q8CFK2 Shf-202ENSMUST00000110530 910 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
Brf1Q8CFK2 Chchd7-208ENSMUST00000121651 620 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Brf1Q8CFK2 Tex30-211ENSMUST00000150911 960 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
Brf1Q8CFK2 Gm21854-201ENSMUST00000179901 471 ntBASIC16.69■□□□□ 0.26
Brf1Q8CFK2 Efcab10-201ENSMUST00000020878 673 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Brf1Q8CFK2 Gm5425-201ENSMUST00000214125 459 ntBASIC16.69■□□□□ 0.26
Brf1Q8CFK2 Slc12a4-201ENSMUST00000034370 3811 ntAPPRIS ALT1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Brf1Q8CFK2 Chchd7-201ENSMUST00000041122 672 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Brf1Q8CFK2 Tmem139-201ENSMUST00000095987 1147 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
Brf1Q8CFK2 Il1r1-202ENSMUST00000114795 4832 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Brf1Q8CFK2 Hnrnpa3-202ENSMUST00000111961 1734 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Brf1Q8CFK2 Zfp647-201ENSMUST00000048854 1608 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Brf1Q8CFK2 Zfp574-202ENSMUST00000179556 4140 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Brf1Q8CFK2 Tle3-215ENSMUST00000162583 4299 ntAPPRIS ALT1 TSL 5 BASIC16.69■□□□□ 0.26
Brf1Q8CFK2 Mpp4-210ENSMUST00000191200 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Brf1Q8CFK2 Robo4-205ENSMUST00000214185 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Brf1Q8CFK2 Pcgf2-201ENSMUST00000018681 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Brf1Q8CFK2 Cnbd2-202ENSMUST00000073942 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Brf1Q8CFK2 Acp5-202ENSMUST00000115315 1349 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
Brf1Q8CFK2 Foxo4-201ENSMUST00000062000 3162 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Brf1Q8CFK2 Lin54-201ENSMUST00000046154 4451 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Brf1Q8CFK2 Rtraf-201ENSMUST00000022341 1562 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Brf1Q8CFK2 Rdh10-201ENSMUST00000027053 3587 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Brf1Q8CFK2 Zbtb20-203ENSMUST00000114691 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Brf1Q8CFK2 Rnf10-203ENSMUST00000112097 3476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Brf1Q8CFK2 Myo19-202ENSMUST00000093969 4091 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
Brf1Q8CFK2 Grk4-201ENSMUST00000001112 2408 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Brf1Q8CFK2 Mfap4-202ENSMUST00000064783 1722 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
Brf1Q8CFK2 Gm29154-231ENSMUST00000215120 1367 ntTSL 5 BASIC16.68■□□□□ 0.26
Brf1Q8CFK2 Skida1-202ENSMUST00000091420 4376 ntAPPRIS P2 TSL 5 BASIC16.68■□□□□ 0.26
Brf1Q8CFK2 Rgs20-203ENSMUST00000119256 883 ntAPPRIS ALT2 TSL 3 BASIC16.68■□□□□ 0.26
Brf1Q8CFK2 Gm14493-201ENSMUST00000141174 543 ntTSL 5 BASIC16.68■□□□□ 0.26
Brf1Q8CFK2 2900022M07Rik-201ENSMUST00000193912 1017 ntBASIC16.68■□□□□ 0.26
Brf1Q8CFK2 AC165157.4-201ENSMUST00000220587 139 ntBASIC16.68■□□□□ 0.26
Brf1Q8CFK2 Reep6-201ENSMUST00000040081 850 ntTSL 5 BASIC16.68■□□□□ 0.26
Brf1Q8CFK2 S100a13-201ENSMUST00000048138 715 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Brf1Q8CFK2 Btrc-201ENSMUST00000065601 2978 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
Brf1Q8CFK2 Gm11149-201ENSMUST00000068730 1250 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Brf1Q8CFK2 Mrps21-202ENSMUST00000072587 405 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Brf1Q8CFK2 Syt8-204ENSMUST00000118276 1503 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
Brf1Q8CFK2 Slc6a19os-201ENSMUST00000022049 1532 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Brf1Q8CFK2 Gm30238-201ENSMUST00000195528 2603 ntBASIC16.68■□□□□ 0.26
Brf1Q8CFK2 Vwc2-202ENSMUST00000109681 3371 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Brf1Q8CFK2 Ccdc155-201ENSMUST00000121017 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Brf1Q8CFK2 Ranbp3-201ENSMUST00000002445 2511 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Brf1Q8CFK2 Dpp3-201ENSMUST00000025851 2683 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Brf1Q8CFK2 Ap2m1-201ENSMUST00000007216 2937 ntAPPRIS P3 TSL 5 BASIC16.68■□□□□ 0.26
Brf1Q8CFK2 Reck-201ENSMUST00000030198 4433 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Brf1Q8CFK2 1700037C18Rik-202ENSMUST00000115859 2592 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Brf1Q8CFK2 Gm37812-201ENSMUST00000195216 2475 ntBASIC16.68■□□□□ 0.26
Brf1Q8CFK2 Tcf25-208ENSMUST00000212571 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Brf1Q8CFK2 Syce1-201ENSMUST00000026553 1460 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Brf1Q8CFK2 Gcat-201ENSMUST00000006544 2365 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Brf1Q8CFK2 Lrrc8d-201ENSMUST00000060531 3923 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Brf1Q8CFK2 Kcnq2-217ENSMUST00000149964 8209 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Brf1Q8CFK2 Camkk2-201ENSMUST00000111668 4861 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Brf1Q8CFK2 Pou5f1-201ENSMUST00000025271 1362 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Brf1Q8CFK2 Clec16a-211ENSMUST00000155633 6213 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Brf1Q8CFK2 Trim15-203ENSMUST00000174195 1778 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Brf1Q8CFK2 Noct-203ENSMUST00000167780 2992 ntAPPRIS P2 TSL 5 BASIC16.67■□□□□ 0.26
Brf1Q8CFK2 B9d1-201ENSMUST00000102657 817 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Brf1Q8CFK2 Ppp1r14d-202ENSMUST00000110820 790 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Brf1Q8CFK2 Vamp2-202ENSMUST00000117780 1113 ntTSL 2 BASIC16.67■□□□□ 0.26
Brf1Q8CFK2 Gm12352-201ENSMUST00000154452 760 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Brf1Q8CFK2 Gm16215-201ENSMUST00000161990 637 ntBASIC16.67■□□□□ 0.26
Brf1Q8CFK2 Gm17795-201ENSMUST00000214505 757 ntBASIC16.67■□□□□ 0.26
Brf1Q8CFK2 AC158987.1-201ENSMUST00000214586 961 ntTSL 5 BASIC16.67■□□□□ 0.26
Brf1Q8CFK2 Olfr1412-201ENSMUST00000062964 966 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
Brf1Q8CFK2 Tpd52-201ENSMUST00000063496 697 ntTSL 2 BASIC16.67■□□□□ 0.26
Brf1Q8CFK2 Dis3-201ENSMUST00000042471 5150 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
Brf1Q8CFK2 St6gal2-202ENSMUST00000086878 2606 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Brf1Q8CFK2 Ppip5k2-201ENSMUST00000042509 5882 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Brf1Q8CFK2 Acot6-202ENSMUST00000222921 3622 ntBASIC16.67■□□□□ 0.26
Brf1Q8CFK2 Psph-201ENSMUST00000031399 1733 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Brf1Q8CFK2 Aifm2-202ENSMUST00000080099 1329 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Brf1Q8CFK2 Tdrd6-201ENSMUST00000045717 7055 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
Brf1Q8CFK2 Adam15-204ENSMUST00000107448 2893 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
Brf1Q8CFK2 Myg1-202ENSMUST00000113682 1480 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Brf1Q8CFK2 Ckmt2-201ENSMUST00000022122 1486 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Brf1Q8CFK2 Dnase1l1-201ENSMUST00000019232 1625 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Brf1Q8CFK2 Gnl3-201ENSMUST00000037739 1947 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Brf1Q8CFK2 Syngap1-202ENSMUST00000177932 3927 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
Brf1Q8CFK2 Tfe3-211ENSMUST00000137467 3390 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Brf1Q8CFK2 Lpar5-201ENSMUST00000088292 1393 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Brf1Q8CFK2 Hoxd3-203ENSMUST00000111983 2968 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Brf1Q8CFK2 Zfp354c-201ENSMUST00000000632 1683 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Brf1Q8CFK2 Atp13a2-203ENSMUST00000127833 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Brf1Q8CFK2 Serpinb2-201ENSMUST00000009356 1970 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Brf1Q8CFK2 Mfsd1-201ENSMUST00000029344 3011 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Retrieved 100 of 76,532 protein–RNA pairs in 21.3 ms