Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 Crb3-204ENSMUST00000163763 868 ntAPPRIS P3 TSL 2 BASIC12.55□□□□□ -0.4
Usf1Q61069 Gm17344-201ENSMUST00000171173 1159 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Usf1Q61069 Psmc3ip-201ENSMUST00000019447 1291 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Usf1Q61069 Myl10-202ENSMUST00000196068 911 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Usf1Q61069 Myl10-203ENSMUST00000196436 598 ntTSL 3 BASIC12.55□□□□□ -0.4
Usf1Q61069 Myl10-204ENSMUST00000197186 607 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Usf1Q61069 Gm18935-201ENSMUST00000212692 664 ntBASIC12.55□□□□□ -0.4
Usf1Q61069 Ier3-201ENSMUST00000003635 1131 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Usf1Q61069 Fam8a1-201ENSMUST00000099547 3664 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Usf1Q61069 Ylpm1-207ENSMUST00000168977 4893 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
Usf1Q61069 Kcnh4-202ENSMUST00000107363 3948 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
Usf1Q61069 Trim15-201ENSMUST00000025329 1843 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
Usf1Q61069 Abcf2-201ENSMUST00000030795 2569 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Usf1Q61069 Dido1-202ENSMUST00000087517 8723 ntAPPRIS P4 TSL 1 (best) BASIC12.55□□□□□ -0.4
Usf1Q61069 Nav1-207ENSMUST00000190298 8557 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Usf1Q61069 Dnm1-204ENSMUST00000113352 4605 ntAPPRIS ALT1 TSL 2 BASIC12.55□□□□□ -0.4
Usf1Q61069 Prdm4-201ENSMUST00000037646 3877 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Usf1Q61069 Cplx2-201ENSMUST00000026985 4928 ntAPPRIS P1 TSL 2 BASIC12.55□□□□□ -0.4
Usf1Q61069 Plcb3-201ENSMUST00000025912 4201 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Usf1Q61069 Cep44-201ENSMUST00000040330 1690 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Usf1Q61069 Tango6-202ENSMUST00000211979 2722 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Usf1Q61069 Prdm10-202ENSMUST00000117389 1952 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Usf1Q61069 Tinf2-205ENSMUST00000227842 2001 ntAPPRIS ALT2 BASIC12.54□□□□□ -0.4
Usf1Q61069 Vps26a-202ENSMUST00000105447 2597 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Usf1Q61069 Rest-202ENSMUST00000113449 6924 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Usf1Q61069 Gm10710-201ENSMUST00000047876 3971 ntBASIC12.54□□□□□ -0.4
Usf1Q61069 Ctsk-201ENSMUST00000015664 1512 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Usf1Q61069 Slc35c1-202ENSMUST00000125276 2668 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Usf1Q61069 Cd63-202ENSMUST00000105229 1043 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Usf1Q61069 Tnni2-206ENSMUST00000149529 768 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
Usf1Q61069 4930432H08Rik-201ENSMUST00000198220 1284 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Usf1Q61069 Gm43758-201ENSMUST00000199500 367 ntBASIC12.54□□□□□ -0.4
Usf1Q61069 1110006O24Rik-201ENSMUST00000201728 768 ntBASIC12.54□□□□□ -0.4
Usf1Q61069 Cd63-204ENSMUST00000219317 1109 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
Usf1Q61069 St13-201ENSMUST00000023039 1089 ntTSL 5 BASIC12.54□□□□□ -0.4
Usf1Q61069 Mien1-201ENSMUST00000002655 747 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Usf1Q61069 Mrto4-201ENSMUST00000030513 930 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
Usf1Q61069 1700120B22Rik-201ENSMUST00000054837 464 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Usf1Q61069 Car5a-201ENSMUST00000057653 1249 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Usf1Q61069 Olfr222-201ENSMUST00000071943 1115 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
Usf1Q61069 Stxbp1-201ENSMUST00000050000 3892 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Usf1Q61069 Grin2a-202ENSMUST00000115835 5023 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
Usf1Q61069 Camk2b-208ENSMUST00000109812 1875 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Usf1Q61069 Crmp1-202ENSMUST00000114158 3051 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Usf1Q61069 Art3-204ENSMUST00000119587 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Usf1Q61069 Lmnb1-201ENSMUST00000025486 2843 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Usf1Q61069 Slc22a7-201ENSMUST00000087012 2007 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Usf1Q61069 D630044L22Rik-201ENSMUST00000181174 2964 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Usf1Q61069 Eml3-202ENSMUST00000224272 2978 ntAPPRIS ALT2 BASIC12.54□□□□□ -0.4
Usf1Q61069 Dlk1-205ENSMUST00000109844 1703 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Usf1Q61069 Specc1-202ENSMUST00000092415 6797 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
Usf1Q61069 Rtn1-202ENSMUST00000078505 3629 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Usf1Q61069 Wt1-201ENSMUST00000111098 2395 ntTSL 5 BASIC12.54□□□□□ -0.4
Usf1Q61069 Ppp4r4-201ENSMUST00000021631 3964 ntAPPRIS P2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Usf1Q61069 Gk-201ENSMUST00000026039 4340 ntAPPRIS ALT1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Usf1Q61069 Dlat-201ENSMUST00000034567 4035 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Usf1Q61069 Tbc1d10c-201ENSMUST00000045864 1758 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Usf1Q61069 Aqp3-201ENSMUST00000055327 1765 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Usf1Q61069 Gm11190-201ENSMUST00000132487 3414 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Usf1Q61069 Rfc5-201ENSMUST00000086461 2796 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Usf1Q61069 Arhgap8-205ENSMUST00000168811 1464 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Usf1Q61069 Syt8-204ENSMUST00000118276 1503 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
Usf1Q61069 Scara3-201ENSMUST00000042046 3597 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Usf1Q61069 Selplg-201ENSMUST00000100874 1855 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Usf1Q61069 Ptger1-201ENSMUST00000019608 4694 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Usf1Q61069 Rasgrp2-208ENSMUST00000113476 2296 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
Usf1Q61069 Cnksr2-202ENSMUST00000112513 4471 ntTSL 5 BASIC12.53□□□□□ -0.4
Usf1Q61069 AC174678.1-201ENSMUST00000228007 2749 ntBASIC12.53□□□□□ -0.4
Usf1Q61069 Psme2b-201ENSMUST00000104958 837 ntAPPRIS P1 BASIC12.53□□□□□ -0.4
Usf1Q61069 Hnf4aos-203ENSMUST00000141329 839 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Usf1Q61069 Asgr1-201ENSMUST00000018699 1259 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
Usf1Q61069 Gm29199-201ENSMUST00000187766 775 ntBASIC12.53□□□□□ -0.4
Usf1Q61069 1700120C14Rik-202ENSMUST00000187967 391 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Usf1Q61069 Gm32850-202ENSMUST00000209149 732 ntTSL 5 BASIC12.53□□□□□ -0.4
Usf1Q61069 Gm45564-201ENSMUST00000210460 530 ntTSL 5 BASIC12.53□□□□□ -0.4
Usf1Q61069 Gm9368-201ENSMUST00000219348 831 ntBASIC12.53□□□□□ -0.4
Usf1Q61069 AC093022.1-201ENSMUST00000226949 1072 ntBASIC12.53□□□□□ -0.4
Usf1Q61069 1810062G17Rik-201ENSMUST00000029268 911 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Usf1Q61069 Ceacam10-201ENSMUST00000038069 1048 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Usf1Q61069 Prss2-201ENSMUST00000070380 815 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Usf1Q61069 Gm10268-201ENSMUST00000085340 555 ntBASIC12.53□□□□□ -0.4
Usf1Q61069 Tjp2-201ENSMUST00000099558 4591 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Usf1Q61069 Pdhx-202ENSMUST00000111183 2078 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Usf1Q61069 Ppt2-209ENSMUST00000171121 1710 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
Usf1Q61069 Gm26747-201ENSMUST00000180597 1716 ntTSL 5 BASIC12.53□□□□□ -0.4
Usf1Q61069 Egfem1-201ENSMUST00000118531 1779 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Usf1Q61069 Tox3-201ENSMUST00000109621 3356 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Usf1Q61069 Gata4-202ENSMUST00000118022 3374 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
Usf1Q61069 Slk-202ENSMUST00000051691 4239 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
Usf1Q61069 4933421O10Rik-201ENSMUST00000155691 3847 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Usf1Q61069 Aaed1-207ENSMUST00000222570 3011 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Usf1Q61069 Ripk3-203ENSMUST00000178399 1865 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Usf1Q61069 Pglyrp2-201ENSMUST00000114455 1915 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Usf1Q61069 Nfyc-201ENSMUST00000043429 1932 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Usf1Q61069 Tcf3-210ENSMUST00000105346 2839 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.4
Usf1Q61069 Ocln-205ENSMUST00000160859 2443 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Usf1Q61069 Sass6-205ENSMUST00000198311 2404 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.4
Usf1Q61069 Cdk8-205ENSMUST00000161181 2467 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
Usf1Q61069 Lonrf3-201ENSMUST00000016383 2911 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Usf1Q61069 Anks1b-202ENSMUST00000099366 2549 ntTSL 5 BASIC12.52□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 38.6 ms