Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Aldh6a1-201ENSMUST00000085192 3399 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Rnf40Q3U319 Atxn7l1-202ENSMUST00000090597 2563 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Rnf40Q3U319 Tulp2-205ENSMUST00000107762 1883 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Rnf40Q3U319 Alkbh3os1-201ENSMUST00000028621 1549 ntTSL 5 BASIC14.39□□□□□ -0.11
Rnf40Q3U319 Mtmr2-201ENSMUST00000034396 3788 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Rnf40Q3U319 Kif16b-201ENSMUST00000043589 6383 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
Rnf40Q3U319 Epb41-208ENSMUST00000105981 5303 ntAPPRIS P3 TSL 5 BASIC14.39□□□□□ -0.11
Rnf40Q3U319 Trp53-203ENSMUST00000108658 1771 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
Rnf40Q3U319 AC025913.2-201ENSMUST00000220136 1766 ntBASIC14.39□□□□□ -0.11
Rnf40Q3U319 Trp53-201ENSMUST00000005371 1772 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Rnf40Q3U319 Smim14-205ENSMUST00000139122 4560 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Rnf40Q3U319 1500011B03Rik-202ENSMUST00000112160 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Rnf40Q3U319 Gm26728-202ENSMUST00000203423 1333 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Rnf40Q3U319 Cyp26b1-203ENSMUST00000204109 1340 ntTSL 5 BASIC14.39□□□□□ -0.11
Rnf40Q3U319 Rccd1-201ENSMUST00000047362 3336 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Rnf40Q3U319 Fbxo8-202ENSMUST00000110322 1709 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Rnf40Q3U319 Tnk1-203ENSMUST00000108628 2450 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
Rnf40Q3U319 2900089D17Rik-201ENSMUST00000124015 2475 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Rnf40Q3U319 Myh3-203ENSMUST00000165221 5994 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
Rnf40Q3U319 Gm28590-201ENSMUST00000185679 1609 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Rnf40Q3U319 Ncln-201ENSMUST00000020463 3118 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Rnf40Q3U319 Elk1-201ENSMUST00000009550 3548 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Rnf40Q3U319 Bud13-201ENSMUST00000074957 2539 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Rnf40Q3U319 Daglb-201ENSMUST00000045593 4651 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Rnf40Q3U319 Mmp11-202ENSMUST00000120281 1793 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Rnf40Q3U319 Mnt-201ENSMUST00000000291 4590 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Rnf40Q3U319 Acaa2-201ENSMUST00000041053 1515 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Rnf40Q3U319 Nfs1-202ENSMUST00000109600 709 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Rnf40Q3U319 AA414768-201ENSMUST00000121924 1257 ntBASIC14.38□□□□□ -0.11
Rnf40Q3U319 Cystm1-205ENSMUST00000152804 445 ntAPPRIS P2 TSL 3 BASIC14.38□□□□□ -0.11
Rnf40Q3U319 Srgn-205ENSMUST00000162161 694 ntAPPRIS P1 TSL 3 BASIC14.38□□□□□ -0.11
Rnf40Q3U319 Mpst-202ENSMUST00000167140 1279 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
Rnf40Q3U319 Rpp40-202ENSMUST00000174230 1053 ntTSL 5 BASIC14.38□□□□□ -0.11
Rnf40Q3U319 6720482G16Rik-201ENSMUST00000199552 1192 ntBASIC14.38□□□□□ -0.11
Rnf40Q3U319 A430033K04Rik-204ENSMUST00000200521 1110 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Rnf40Q3U319 Ndufs6-204ENSMUST00000223293 757 ntTSL 2 BASIC14.38□□□□□ -0.11
Rnf40Q3U319 AC125539.1-202ENSMUST00000226449 670 ntBASIC14.38□□□□□ -0.11
Rnf40Q3U319 Mrpl20-201ENSMUST00000030942 764 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Rnf40Q3U319 Prss40-201ENSMUST00000047840 1275 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Rnf40Q3U319 Prss27-201ENSMUST00000059482 1253 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Rnf40Q3U319 Rnase9-201ENSMUST00000064214 1189 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Rnf40Q3U319 Eif1b-201ENSMUST00000007139 1035 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Rnf40Q3U319 Gm10190-201ENSMUST00000086549 324 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
Rnf40Q3U319 Fthl17f-201ENSMUST00000097029 847 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
Rnf40Q3U319 Mllt6-201ENSMUST00000044730 7274 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Rnf40Q3U319 Matr3-206ENSMUST00000187389 3107 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
Rnf40Q3U319 Proser3-202ENSMUST00000108165 2466 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Rnf40Q3U319 Proser3-206ENSMUST00000215288 2465 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
Rnf40Q3U319 Gm8096-201ENSMUST00000209921 1591 ntBASIC14.38□□□□□ -0.11
Rnf40Q3U319 Mtch2-211ENSMUST00000150232 2377 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Rnf40Q3U319 Rtn3-203ENSMUST00000088169 1709 ntTSL 5 BASIC14.38□□□□□ -0.11
Rnf40Q3U319 Ncor2-205ENSMUST00000111398 8808 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
Rnf40Q3U319 Nbeal2-210ENSMUST00000167320 8803 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Rnf40Q3U319 Gm10176-201ENSMUST00000159707 2264 ntBASIC14.38□□□□□ -0.11
Rnf40Q3U319 Smarca4-204ENSMUST00000174008 5405 ntAPPRIS ALT1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Rnf40Q3U319 Lzts1-204ENSMUST00000185176 5019 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
Rnf40Q3U319 Egfl6-201ENSMUST00000000412 2704 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Rnf40Q3U319 Jph2-201ENSMUST00000017961 4211 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Rnf40Q3U319 Gabpb1-202ENSMUST00000089745 3254 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Rnf40Q3U319 Gstt2-201ENSMUST00000038257 1370 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Rnf40Q3U319 Sltm-206ENSMUST00000216816 3755 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
Rnf40Q3U319 Fbln1-201ENSMUST00000057410 3659 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
Rnf40Q3U319 Gm14859-201ENSMUST00000117752 357 ntBASIC14.37□□□□□ -0.11
Rnf40Q3U319 Gm11780-201ENSMUST00000136880 516 ntBASIC14.37□□□□□ -0.11
Rnf40Q3U319 AC132446.1-201ENSMUST00000222655 226 ntBASIC14.37□□□□□ -0.11
Rnf40Q3U319 Gsdmcl1-201ENSMUST00000071847 1133 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Rnf40Q3U319 Kifc1-201ENSMUST00000114361 2260 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
Rnf40Q3U319 Zkscan3-202ENSMUST00000116433 1421 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Rnf40Q3U319 Nfya-206ENSMUST00000160319 1407 ntTSL 5 BASIC14.37□□□□□ -0.11
Rnf40Q3U319 Plekhg2-202ENSMUST00000119990 4880 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Rnf40Q3U319 Rxrg-204ENSMUST00000111386 1705 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
Rnf40Q3U319 Fbxo25-201ENSMUST00000043520 2012 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
Rnf40Q3U319 Col22a1-202ENSMUST00000159993 8809 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
Rnf40Q3U319 Tgm1-201ENSMUST00000002389 2791 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Rnf40Q3U319 Mast3-203ENSMUST00000211948 4251 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Rnf40Q3U319 Spin1-201ENSMUST00000095797 4434 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Rnf40Q3U319 Gm9347-201ENSMUST00000211473 1607 ntBASIC14.37□□□□□ -0.11
Rnf40Q3U319 Armcx1-204ENSMUST00000113198 2085 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
Rnf40Q3U319 Ptpn14-201ENSMUST00000027898 2666 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Rnf40Q3U319 BC048403-202ENSMUST00000136432 2968 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Rnf40Q3U319 Stx11-202ENSMUST00000163425 4032 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Rnf40Q3U319 Arhgap10-202ENSMUST00000210519 2295 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Rnf40Q3U319 Gm14342-201ENSMUST00000137629 2119 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Rnf40Q3U319 Ahsa1-201ENSMUST00000021425 1377 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Rnf40Q3U319 Capn3-203ENSMUST00000090028 2640 ntTSL 5 BASIC14.36□□□□□ -0.11
Rnf40Q3U319 Eln-201ENSMUST00000015138 3853 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Rnf40Q3U319 Sass6-206ENSMUST00000198386 1894 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Rnf40Q3U319 Wasl-201ENSMUST00000031695 4352 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Rnf40Q3U319 Ubap2l-202ENSMUST00000064639 4073 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Rnf40Q3U319 2610028D06Rik-201ENSMUST00000215216 1713 ntBASIC14.36□□□□□ -0.11
Rnf40Q3U319 Jakmip3-201ENSMUST00000106111 1571 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
Rnf40Q3U319 Gnpda2-202ENSMUST00000120789 1594 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Rnf40Q3U319 Slc29a1-209ENSMUST00000166119 1598 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
Rnf40Q3U319 Gm9109-201ENSMUST00000120254 1405 ntBASIC14.36□□□□□ -0.11
Rnf40Q3U319 Kifc1-204ENSMUST00000173492 2350 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Rnf40Q3U319 Necab1-201ENSMUST00000041606 4922 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Rnf40Q3U319 Gm12467-201ENSMUST00000117625 745 ntBASIC14.36□□□□□ -0.11
Rnf40Q3U319 Gm15138-201ENSMUST00000151778 379 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Rnf40Q3U319 Bud31-203ENSMUST00000160075 928 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
Rnf40Q3U319 Gm37153-201ENSMUST00000193637 231 ntBASIC14.36□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 40.9 ms