Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Nat8f1-201ENSMUST00000161198 1021 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Col8a1Q00780 Fundc1-204ENSMUST00000176638 448 ntTSL 3 BASIC11.78□□□□□ -0.52
Col8a1Q00780 Mhrt-201ENSMUST00000181782 828 ntTSL 2 BASIC11.78□□□□□ -0.52
Col8a1Q00780 Mir7070-201ENSMUST00000183657 86 ntBASIC11.78□□□□□ -0.52
Col8a1Q00780 Gm29501-201ENSMUST00000186133 530 ntTSL 5 BASIC11.78□□□□□ -0.52
Col8a1Q00780 2010106C02Rik-201ENSMUST00000191222 660 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Col8a1Q00780 Ssr2-202ENSMUST00000192495 620 ntTSL 5 BASIC11.78□□□□□ -0.52
Col8a1Q00780 Gm43758-201ENSMUST00000199500 367 ntBASIC11.78□□□□□ -0.52
Col8a1Q00780 Gm18905-201ENSMUST00000205454 928 ntBASIC11.78□□□□□ -0.52
Col8a1Q00780 Ormdl2-204ENSMUST00000219524 724 ntAPPRIS P1 TSL 2 BASIC11.78□□□□□ -0.52
Col8a1Q00780 Wdr83-201ENSMUST00000093357 1238 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Col8a1Q00780 Pax7-201ENSMUST00000030508 5854 ntAPPRIS P2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Col8a1Q00780 Nkd2-202ENSMUST00000118096 2801 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Col8a1Q00780 Gm36839-201ENSMUST00000222088 2093 ntTSL 5 BASIC11.78□□□□□ -0.52
Col8a1Q00780 Clcn2-201ENSMUST00000007207 3128 ntAPPRIS P2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Col8a1Q00780 Nap1l5-201ENSMUST00000059539 1844 ntAPPRIS P1 BASIC11.78□□□□□ -0.52
Col8a1Q00780 Ces2f-201ENSMUST00000076384 1823 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Col8a1Q00780 Cops7a-202ENSMUST00000112439 1328 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Col8a1Q00780 Gm11978-202ENSMUST00000127510 1303 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Col8a1Q00780 Hp-201ENSMUST00000074898 1345 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Col8a1Q00780 4933435G04Rik-201ENSMUST00000205892 2108 ntBASIC11.78□□□□□ -0.52
Col8a1Q00780 Carmil3-201ENSMUST00000076236 4602 ntAPPRIS P1 TSL 2 BASIC11.78□□□□□ -0.52
Col8a1Q00780 Nxnl1-202ENSMUST00000163659 2730 ntAPPRIS P1 TSL 2 BASIC11.78□□□□□ -0.52
Col8a1Q00780 Zfp422-203ENSMUST00000112880 2523 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Col8a1Q00780 Prnd-202ENSMUST00000110170 1969 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Col8a1Q00780 Ablim2-205ENSMUST00000114205 2579 ntAPPRIS ALT2 TSL 5 BASIC11.77□□□□□ -0.52
Col8a1Q00780 Ptpn6-210ENSMUST00000174265 1743 ntTSL 5 BASIC11.77□□□□□ -0.52
Col8a1Q00780 Gm9768-201ENSMUST00000206007 2861 ntBASIC11.77□□□□□ -0.52
Col8a1Q00780 Fmn2-201ENSMUST00000030039 6442 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Col8a1Q00780 Atp2c2-201ENSMUST00000095171 3222 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Col8a1Q00780 Syncrip-209ENSMUST00000174361 1767 ntTSL 5 BASIC11.77□□□□□ -0.52
Col8a1Q00780 Ovca2-201ENSMUST00000071562 2670 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Col8a1Q00780 Wdr1-205ENSMUST00000201260 2139 ntTSL 1 (best) BASIC11.77□□□□□ -0.52
Col8a1Q00780 Kir3dl1-202ENSMUST00000113105 1544 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Col8a1Q00780 Acy1-201ENSMUST00000024031 1529 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Col8a1Q00780 Zbtb20-202ENSMUST00000114690 2759 ntAPPRIS ALT1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Col8a1Q00780 Cdadc1-204ENSMUST00000171683 1892 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.53
Col8a1Q00780 Bckdha-201ENSMUST00000071329 1899 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Col8a1Q00780 Traf3ip1-201ENSMUST00000047242 3474 ntAPPRIS P2 TSL 1 (best) BASIC11.77□□□□□ -0.53
Col8a1Q00780 Reck-201ENSMUST00000030198 4433 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Col8a1Q00780 Gm22018-201ENSMUST00000104357 131 ntBASIC11.77□□□□□ -0.53
Col8a1Q00780 Ngb-202ENSMUST00000110176 908 ntTSL 3 BASIC11.77□□□□□ -0.53
Col8a1Q00780 Gm11803-201ENSMUST00000119966 444 ntBASIC11.77□□□□□ -0.53
Col8a1Q00780 Gm12786-201ENSMUST00000129617 644 ntTSL 3 BASIC11.77□□□□□ -0.53
Col8a1Q00780 Gm15444-201ENSMUST00000148335 388 ntTSL 5 BASIC11.77□□□□□ -0.53
Col8a1Q00780 Gm26083-201ENSMUST00000157904 193 ntBASIC11.77□□□□□ -0.53
Col8a1Q00780 Gm16315-201ENSMUST00000163009 783 ntTSL 3 BASIC11.77□□□□□ -0.53
Col8a1Q00780 Cdk3-ps-202ENSMUST00000174177 915 ntAPPRIS P1 TSL 5 BASIC11.77□□□□□ -0.53
Col8a1Q00780 Hmgcll1-207ENSMUST00000183979 1136 ntTSL 5 BASIC11.77□□□□□ -0.53
Col8a1Q00780 Selenoh-205ENSMUST00000189636 499 ntAPPRIS ALT2 TSL 3 BASIC11.77□□□□□ -0.53
Col8a1Q00780 1700045I11Rik-201ENSMUST00000194752 493 ntBASIC11.77□□□□□ -0.53
Col8a1Q00780 Gm37008-201ENSMUST00000195712 319 ntBASIC11.77□□□□□ -0.53
Col8a1Q00780 Gm44364-201ENSMUST00000198368 141 ntBASIC11.77□□□□□ -0.53
Col8a1Q00780 AC140406.1-201ENSMUST00000226481 465 ntBASIC11.77□□□□□ -0.53
Col8a1Q00780 Tex26-201ENSMUST00000031667 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.53
Col8a1Q00780 Ppp1r14d-201ENSMUST00000076084 787 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Col8a1Q00780 Gm12166-201ENSMUST00000093169 958 ntAPPRIS P1 BASIC11.77□□□□□ -0.53
Col8a1Q00780 Fbxl8-201ENSMUST00000036221 1901 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Col8a1Q00780 Ppef2-201ENSMUST00000031359 2274 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Col8a1Q00780 Rtn4-205ENSMUST00000102843 4618 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Col8a1Q00780 Repin1-207ENSMUST00000163452 2959 ntAPPRIS P3 TSL 1 (best) BASIC11.77□□□□□ -0.53
Col8a1Q00780 Mylk2-201ENSMUST00000028970 2951 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Col8a1Q00780 Wbp2nl-201ENSMUST00000023089 1318 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Col8a1Q00780 Nt5c3b-202ENSMUST00000092689 1344 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Col8a1Q00780 Pcdha6-202ENSMUST00000193777 5367 ntAPPRIS P2 TSL 1 (best) BASIC11.77□□□□□ -0.53
Col8a1Q00780 Gigyf2-201ENSMUST00000027475 5724 ntAPPRIS P3 TSL 1 (best) BASIC11.77□□□□□ -0.53
Col8a1Q00780 Mospd2-201ENSMUST00000004715 2015 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Col8a1Q00780 Specc1-202ENSMUST00000092415 6797 ntAPPRIS ALT2 TSL 5 BASIC11.77□□□□□ -0.53
Col8a1Q00780 Gm26793-201ENSMUST00000180930 2732 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Col8a1Q00780 Taf3-201ENSMUST00000026888 4792 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Col8a1Q00780 Gm7993-201ENSMUST00000200970 1384 ntBASIC11.77□□□□□ -0.53
Col8a1Q00780 1810008I18Rik-201ENSMUST00000185464 2419 ntBASIC11.77□□□□□ -0.53
Col8a1Q00780 Coil-202ENSMUST00000107898 3120 ntAPPRIS P1 TSL 5 BASIC11.77□□□□□ -0.53
Col8a1Q00780 Sh2d5-202ENSMUST00000105824 3512 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Col8a1Q00780 Syt12-201ENSMUST00000059295 3581 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Col8a1Q00780 Phf8-204ENSMUST00000112666 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Col8a1Q00780 Il1r1-202ENSMUST00000114795 4832 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Col8a1Q00780 Pik3ap1-201ENSMUST00000059672 2615 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Col8a1Q00780 Slc16a9-201ENSMUST00000046807 3756 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Col8a1Q00780 Dysf-214ENSMUST00000204354 6432 ntAPPRIS ALT2 TSL 5 BASIC11.76□□□□□ -0.53
Col8a1Q00780 Mst1-201ENSMUST00000035211 2262 ntAPPRIS P2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Col8a1Q00780 Cgn-201ENSMUST00000107272 4963 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Col8a1Q00780 Arhgef2-223ENSMUST00000176804 3086 ntAPPRIS ALT2 TSL 5 BASIC11.76□□□□□ -0.53
Col8a1Q00780 Ppfia3-201ENSMUST00000003961 4647 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Col8a1Q00780 Dlgap4-204ENSMUST00000109566 1595 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Col8a1Q00780 Ccdc137-201ENSMUST00000058370 2778 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Col8a1Q00780 Sacm1l-201ENSMUST00000026270 3558 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Col8a1Q00780 Acss1-201ENSMUST00000028944 3618 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Col8a1Q00780 Ddc-210ENSMUST00000178704 2018 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Col8a1Q00780 Gm7324-201ENSMUST00000094051 1647 ntAPPRIS P1 BASIC11.76□□□□□ -0.53
Col8a1Q00780 Stard5-201ENSMUST00000075418 2483 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Col8a1Q00780 Spcs2-201ENSMUST00000036274 2909 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Col8a1Q00780 Zfp503-201ENSMUST00000043409 4216 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Col8a1Q00780 Eif3i-201ENSMUST00000102593 1123 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Col8a1Q00780 Gm13834-201ENSMUST00000123757 137 ntTSL 3 BASIC11.76□□□□□ -0.53
Col8a1Q00780 Gm16342-201ENSMUST00000124025 1025 ntBASIC11.76□□□□□ -0.53
Col8a1Q00780 Gm16124-201ENSMUST00000146938 516 ntTSL 2 BASIC11.76□□□□□ -0.53
Col8a1Q00780 Gm10275-202ENSMUST00000168697 495 ntBASIC11.76□□□□□ -0.53
Col8a1Q00780 Gm45881-201ENSMUST00000210659 517 ntTSL 5 BASIC11.76□□□□□ -0.53
Col8a1Q00780 Spc24-204ENSMUST00000216057 627 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Retrieved 100 of 76,532 protein–RNA pairs in 43.1 ms