Protein–RNA interactions for Protein: P48381

Rfx3, Transcription factor RFX3, mousemouse

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx3P48381 Gm21873-201ENSMUST00000186728 696 ntBASIC12.51□□□□□ -0.41
Rfx3P48381 Gm21794-201ENSMUST00000187056 696 ntBASIC12.51□□□□□ -0.41
Rfx3P48381 Gm21880-201ENSMUST00000187275 696 ntBASIC12.51□□□□□ -0.41
Rfx3P48381 Gm21826-201ENSMUST00000187451 696 ntBASIC12.51□□□□□ -0.41
Rfx3P48381 Gm21198-201ENSMUST00000188393 696 ntBASIC12.51□□□□□ -0.41
Rfx3P48381 Gm21749-201ENSMUST00000189343 696 ntBASIC12.51□□□□□ -0.41
Rfx3P48381 Gm21901-201ENSMUST00000189568 696 ntBASIC12.51□□□□□ -0.41
Rfx3P48381 Gm29424-201ENSMUST00000189716 696 ntBASIC12.51□□□□□ -0.41
Rfx3P48381 Gm28599-201ENSMUST00000189838 694 ntBASIC12.51□□□□□ -0.41
Rfx3P48381 Gm21867-201ENSMUST00000189917 696 ntBASIC12.51□□□□□ -0.41
Rfx3P48381 Gm29269-201ENSMUST00000190087 696 ntBASIC12.51□□□□□ -0.41
Rfx3P48381 Gm21722-201ENSMUST00000190153 696 ntBASIC12.51□□□□□ -0.41
Rfx3P48381 Gm28423-201ENSMUST00000190701 696 ntBASIC12.51□□□□□ -0.41
Rfx3P48381 Gm21899-201ENSMUST00000190745 696 ntBASIC12.51□□□□□ -0.41
Rfx3P48381 Gm21910-201ENSMUST00000191163 696 ntBASIC12.51□□□□□ -0.41
Rfx3P48381 Gm21849-201ENSMUST00000191571 696 ntBASIC12.51□□□□□ -0.41
Rfx3P48381 Gm28678-201ENSMUST00000191593 696 ntBASIC12.51□□□□□ -0.41
Rfx3P48381 Gm20910-201ENSMUST00000193268 696 ntBASIC12.51□□□□□ -0.41
Rfx3P48381 Gm21871-201ENSMUST00000194621 696 ntBASIC12.51□□□□□ -0.41
Rfx3P48381 Atf5-203ENSMUST00000209072 595 ntTSL 5 BASIC12.51□□□□□ -0.41
Rfx3P48381 Chchd10-201ENSMUST00000058906 939 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Rfx3P48381 Sh3bgr-201ENSMUST00000048770 1321 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Rfx3P48381 Cmpk1-201ENSMUST00000030491 3170 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Rfx3P48381 Rad17-202ENSMUST00000177848 2392 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Rfx3P48381 Mrps9-201ENSMUST00000057208 1418 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Rfx3P48381 Nrxn1-202ENSMUST00000072671 8118 ntTSL 5 BASIC12.51□□□□□ -0.41
Rfx3P48381 Il1rapl2-202ENSMUST00000113063 3437 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Rfx3P48381 Lpar5-203ENSMUST00000171989 1458 ntAPPRIS P1 TSL 2 BASIC12.51□□□□□ -0.41
Rfx3P48381 Cacna2d2-204ENSMUST00000166799 3474 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
Rfx3P48381 Retreg1-202ENSMUST00000110438 1526 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Rfx3P48381 Pak4-201ENSMUST00000032823 2611 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Rfx3P48381 Sfn-201ENSMUST00000057311 1613 ntAPPRIS P1 BASIC12.51□□□□□ -0.41
Rfx3P48381 Gm20149-201ENSMUST00000214691 1667 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Rfx3P48381 Ncor2-204ENSMUST00000111394 7452 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Rfx3P48381 5730409E04Rik-202ENSMUST00000164362 2855 ntAPPRIS P1 TSL 3 BASIC12.51□□□□□ -0.41
Rfx3P48381 Ankrd61-201ENSMUST00000079624 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Rfx3P48381 Gata1-201ENSMUST00000033502 1902 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Rfx3P48381 Il6ra-201ENSMUST00000029559 3343 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
Rfx3P48381 Ate1-202ENSMUST00000035458 4685 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Rfx3P48381 Ap2a1-204ENSMUST00000167930 3376 ntTSL 5 BASIC12.5□□□□□ -0.41
Rfx3P48381 Spon1-201ENSMUST00000046687 6161 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Rfx3P48381 Kars-202ENSMUST00000093120 2131 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Rfx3P48381 Tspan12-202ENSMUST00000120965 2157 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Rfx3P48381 AC154262.2-201ENSMUST00000224310 2293 ntBASIC12.5□□□□□ -0.41
Rfx3P48381 Rbpjl-201ENSMUST00000017151 2456 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Rfx3P48381 Me2-201ENSMUST00000025439 2455 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Rfx3P48381 Kcnj8-202ENSMUST00000203945 2548 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Rfx3P48381 Cog3-201ENSMUST00000049168 4222 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Rfx3P48381 R3hdm2-212ENSMUST00000166820 4281 ntAPPRIS P2 TSL 5 BASIC12.5□□□□□ -0.41
Rfx3P48381 Zbtb49-202ENSMUST00000114113 2645 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Rfx3P48381 Cabp7-201ENSMUST00000009219 2628 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Rfx3P48381 Adat3-201ENSMUST00000178231 4516 ntAPPRIS P1 TSL 2 BASIC12.5□□□□□ -0.41
Rfx3P48381 Clec11a-201ENSMUST00000004587 2978 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Rfx3P48381 Speg-205ENSMUST00000113590 3393 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Rfx3P48381 Unc5b-203ENSMUST00000218637 3653 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Rfx3P48381 Tex30-206ENSMUST00000133677 935 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Rfx3P48381 Gm20481-201ENSMUST00000173680 564 ntAPPRIS P1 TSL 3 BASIC12.5□□□□□ -0.41
Rfx3P48381 Six3os1-205ENSMUST00000175913 791 ntTSL 3 BASIC12.5□□□□□ -0.41
Rfx3P48381 Gm20036-201ENSMUST00000177547 844 ntTSL 3 BASIC12.5□□□□□ -0.41
Rfx3P48381 Wfdc2-201ENSMUST00000017867 849 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Rfx3P48381 Gm9824-201ENSMUST00000178707 561 ntBASIC12.5□□□□□ -0.41
Rfx3P48381 Gm8116-201ENSMUST00000182917 1201 ntBASIC12.5□□□□□ -0.41
Rfx3P48381 Gm9109-201ENSMUST00000120254 1405 ntBASIC12.5□□□□□ -0.41
Rfx3P48381 Tmem176b-203ENSMUST00000166247 1414 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Rfx3P48381 Foxj2-202ENSMUST00000177927 4620 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
Rfx3P48381 Pde4d-203ENSMUST00000117420 1955 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Rfx3P48381 Emc3-201ENSMUST00000032425 1985 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Rfx3P48381 Duxf3-202ENSMUST00000176875 2025 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
Rfx3P48381 Mrpl58-209ENSMUST00000153983 2596 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Rfx3P48381 Nr1d1-201ENSMUST00000064941 2721 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Rfx3P48381 Rhbdl3-201ENSMUST00000017836 3736 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Rfx3P48381 Traf6-201ENSMUST00000004949 6169 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Rfx3P48381 Abcg4-208ENSMUST00000161354 3999 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Rfx3P48381 Irak1-204ENSMUST00000114352 3825 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
Rfx3P48381 Sp6-202ENSMUST00000107622 3621 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Rfx3P48381 Shank2-203ENSMUST00000105902 8988 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
Rfx3P48381 Ctbs-202ENSMUST00000061937 2892 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Rfx3P48381 Plxdc1-203ENSMUST00000107565 2439 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Rfx3P48381 Dhx58-201ENSMUST00000017974 2412 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Rfx3P48381 Xrcc3-201ENSMUST00000021715 2422 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Rfx3P48381 Kcnk16-202ENSMUST00000225596 2127 ntBASIC12.49□□□□□ -0.41
Rfx3P48381 A530072M11Rik-201ENSMUST00000151122 1852 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Rfx3P48381 Sirt3-210ENSMUST00000211179 1606 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
Rfx3P48381 Nfic-207ENSMUST00000221817 1531 ntTSL 5 BASIC12.49□□□□□ -0.41
Rfx3P48381 Fam172a-203ENSMUST00000163257 1436 ntAPPRIS P4 TSL 5 BASIC12.49□□□□□ -0.41
Rfx3P48381 Zbtb5-202ENSMUST00000107817 3867 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Rfx3P48381 Gm23935-201ENSMUST00000102303 57 ntBASIC12.49□□□□□ -0.41
Rfx3P48381 Gm24270-201ENSMUST00000102326 57 ntBASIC12.49□□□□□ -0.41
Rfx3P48381 Gm25287-201ENSMUST00000103846 110 ntBASIC12.49□□□□□ -0.41
Rfx3P48381 Gm22918-201ENSMUST00000103855 110 ntBASIC12.49□□□□□ -0.41
Rfx3P48381 Cnn2-202ENSMUST00000105374 926 ntTSL 5 BASIC12.49□□□□□ -0.41
Rfx3P48381 Abhd11-202ENSMUST00000111216 972 ntTSL 3 BASIC12.49□□□□□ -0.41
Rfx3P48381 Gm14822-201ENSMUST00000122247 291 ntBASIC12.49□□□□□ -0.41
Rfx3P48381 Cmc2-202ENSMUST00000128304 394 ntTSL 5 BASIC12.49□□□□□ -0.41
Rfx3P48381 Gm24245-201ENSMUST00000157318 57 ntBASIC12.49□□□□□ -0.41
Rfx3P48381 Gm43125-201ENSMUST00000201724 730 ntBASIC12.49□□□□□ -0.41
Rfx3P48381 5830408C22Rik-201ENSMUST00000210072 1115 ntTSL 5 BASIC12.49□□□□□ -0.41
Rfx3P48381 Lce1b-201ENSMUST00000029531 647 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Rfx3P48381 Ndufb6-201ENSMUST00000095128 659 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Rfx3P48381 Nfat5-201ENSMUST00000075922 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 27.7 ms