Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Ltbp4-201ENSMUST00000038618 5386 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.32
Trim3Q9R1R2 Trim26-201ENSMUST00000053434 3198 ntAPPRIS P2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Trim3Q9R1R2 Eef1d-204ENSMUST00000089681 2152 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Trim3Q9R1R2 E130317F20Rik-202ENSMUST00000217802 3420 ntBASIC13.07□□□□□ -0.32
Trim3Q9R1R2 Gm42872-201ENSMUST00000200026 1967 ntBASIC13.07□□□□□ -0.32
Trim3Q9R1R2 Htr3a-202ENSMUST00000217289 1987 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Trim3Q9R1R2 Eif4g1-205ENSMUST00000115461 5507 ntAPPRIS ALT2 TSL 5 BASIC13.07□□□□□ -0.32
Trim3Q9R1R2 Itm2b-201ENSMUST00000022704 1796 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Trim3Q9R1R2 Adam22-203ENSMUST00000088744 9245 ntAPPRIS ALT2 TSL 5 BASIC13.07□□□□□ -0.32
Trim3Q9R1R2 Top2b-201ENSMUST00000017629 10335 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Trim3Q9R1R2 Kcnd3-203ENSMUST00000118360 2668 ntAPPRIS P4 TSL 5 BASIC13.06□□□□□ -0.32
Trim3Q9R1R2 Cdh7-206ENSMUST00000137092 2681 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Trim3Q9R1R2 Rsu1-202ENSMUST00000114791 1604 ntTSL 5 BASIC13.06□□□□□ -0.32
Trim3Q9R1R2 Ywhag-205ENSMUST00000198270 1610 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
Trim3Q9R1R2 Ssr1-204ENSMUST00000225319 1610 ntBASIC13.06□□□□□ -0.32
Trim3Q9R1R2 Grik2-210ENSMUST00000220263 2085 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Trim3Q9R1R2 Tle3-215ENSMUST00000162583 4299 ntAPPRIS ALT1 TSL 5 BASIC13.06□□□□□ -0.32
Trim3Q9R1R2 Atp9b-213ENSMUST00000225980 5150 ntAPPRIS P2 BASIC13.06□□□□□ -0.32
Trim3Q9R1R2 Epsti1-201ENSMUST00000022591 1870 ntAPPRIS P2 TSL 1 (best) BASIC13.06□□□□□ -0.32
Trim3Q9R1R2 Efhd1-201ENSMUST00000027472 1854 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Trim3Q9R1R2 Olfr160-203ENSMUST00000215727 1667 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
Trim3Q9R1R2 Krt20-201ENSMUST00000017743 1927 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Trim3Q9R1R2 Zfp740-201ENSMUST00000118729 4241 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
Trim3Q9R1R2 Rdh10-201ENSMUST00000027053 3587 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Trim3Q9R1R2 Eif3j1-201ENSMUST00000028668 5413 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Trim3Q9R1R2 Tsku-206ENSMUST00000179780 2404 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Trim3Q9R1R2 Fam53b-204ENSMUST00000106165 1232 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Trim3Q9R1R2 Msmp-201ENSMUST00000107884 743 ntAPPRIS P1 TSL 3 BASIC13.06□□□□□ -0.32
Trim3Q9R1R2 Pex11g-202ENSMUST00000111081 666 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Trim3Q9R1R2 Gm6222-201ENSMUST00000120787 396 ntBASIC13.06□□□□□ -0.32
Trim3Q9R1R2 Gm13383-201ENSMUST00000131190 1171 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Trim3Q9R1R2 Ncr3-ps-201ENSMUST00000134687 525 ntBASIC13.06□□□□□ -0.32
Trim3Q9R1R2 Gm15825-201ENSMUST00000159108 918 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Trim3Q9R1R2 Gm27533-201ENSMUST00000183800 152 ntBASIC13.06□□□□□ -0.32
Trim3Q9R1R2 Gm27306-201ENSMUST00000183970 107 ntBASIC13.06□□□□□ -0.32
Trim3Q9R1R2 Gm36536-201ENSMUST00000194241 959 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Trim3Q9R1R2 Saa2-203ENSMUST00000210769 652 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Trim3Q9R1R2 Gm33337-201ENSMUST00000219594 228 ntTSL 3 BASIC13.06□□□□□ -0.32
Trim3Q9R1R2 Gm6888-201ENSMUST00000221983 706 ntBASIC13.06□□□□□ -0.32
Trim3Q9R1R2 4930408O17Rik-202ENSMUST00000222624 1131 ntTSL 5 BASIC13.06□□□□□ -0.32
Trim3Q9R1R2 AC090659.2-201ENSMUST00000225378 1186 ntBASIC13.06□□□□□ -0.32
Trim3Q9R1R2 AC123645.1-201ENSMUST00000228469 605 ntBASIC13.06□□□□□ -0.32
Trim3Q9R1R2 Saa2-201ENSMUST00000075982 606 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Trim3Q9R1R2 Serpinh1-201ENSMUST00000094154 2215 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Trim3Q9R1R2 2010300F17Rik-202ENSMUST00000181758 2493 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Trim3Q9R1R2 Rev3l-201ENSMUST00000019986 10713 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Trim3Q9R1R2 Gm45740-201ENSMUST00000212103 2003 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Trim3Q9R1R2 Ube2k-210ENSMUST00000202679 4682 ntTSL 5 BASIC13.06□□□□□ -0.32
Trim3Q9R1R2 Arpc4-203ENSMUST00000203578 1323 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Trim3Q9R1R2 Syt10-201ENSMUST00000029441 1845 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Trim3Q9R1R2 Atp2a3-203ENSMUST00000108485 4520 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
Trim3Q9R1R2 Mrpl58-209ENSMUST00000153983 2596 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Trim3Q9R1R2 A530083I20Rik-201ENSMUST00000180486 2421 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Trim3Q9R1R2 Ciart-202ENSMUST00000159739 1939 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Trim3Q9R1R2 Vegfa-202ENSMUST00000071648 3451 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
Trim3Q9R1R2 Gcsh-201ENSMUST00000040484 1443 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Trim3Q9R1R2 Nr1d1-201ENSMUST00000064941 2721 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Trim3Q9R1R2 Slc39a8-202ENSMUST00000081978 3314 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Trim3Q9R1R2 Arhgap8-205ENSMUST00000168811 1464 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Trim3Q9R1R2 Slc37a1-201ENSMUST00000165149 3354 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Trim3Q9R1R2 Cacna1g-206ENSMUST00000107788 8050 ntAPPRIS ALT2 TSL 5 BASIC13.05□□□□□ -0.32
Trim3Q9R1R2 Cacna1g-211ENSMUST00000107793 8071 ntAPPRIS ALT2 TSL 5 BASIC13.05□□□□□ -0.32
Trim3Q9R1R2 Grb10-201ENSMUST00000093321 5061 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
Trim3Q9R1R2 Gng4-201ENSMUST00000021734 3179 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Trim3Q9R1R2 Cnot7-201ENSMUST00000034012 2615 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Trim3Q9R1R2 Dnajc6-204ENSMUST00000106930 5127 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
Trim3Q9R1R2 Tfap2a-201ENSMUST00000021787 3487 ntAPPRIS ALT1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Trim3Q9R1R2 Tm9sf1-201ENSMUST00000002391 2382 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Trim3Q9R1R2 Men1-208ENSMUST00000113504 2663 ntAPPRIS P2 TSL 1 (best) BASIC13.05□□□□□ -0.32
Trim3Q9R1R2 Zfp747-201ENSMUST00000067425 2684 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Trim3Q9R1R2 Gm24543-201ENSMUST00000103867 82 ntBASIC13.05□□□□□ -0.32
Trim3Q9R1R2 Styxl1-204ENSMUST00000111163 1276 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Trim3Q9R1R2 Cryba4-202ENSMUST00000112383 754 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Trim3Q9R1R2 Lrrc3c-201ENSMUST00000142268 902 ntAPPRIS P1 TSL 3 BASIC13.05□□□□□ -0.32
Trim3Q9R1R2 Mroh1-217ENSMUST00000162319 1244 ntAPPRIS ALT2 TSL 5 BASIC13.05□□□□□ -0.32
Trim3Q9R1R2 Cend1-204ENSMUST00000164387 1206 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Trim3Q9R1R2 Gm38182-203ENSMUST00000192984 993 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Trim3Q9R1R2 Pcdhgc5-204ENSMUST00000193941 593 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Trim3Q9R1R2 Mpv17-203ENSMUST00000200833 1171 ntTSL 5 BASIC13.05□□□□□ -0.32
Trim3Q9R1R2 Ppcdc-205ENSMUST00000214144 724 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Trim3Q9R1R2 Smdt1-201ENSMUST00000023086 705 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Trim3Q9R1R2 Dkkl1-201ENSMUST00000033057 1149 ntAPPRIS P2 TSL 1 (best) BASIC13.05□□□□□ -0.32
Trim3Q9R1R2 Ifng-201ENSMUST00000068592 1208 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Trim3Q9R1R2 Arl6ip6-201ENSMUST00000028336 2548 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Trim3Q9R1R2 Hmx2-201ENSMUST00000051997 3102 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Trim3Q9R1R2 Phka1-206ENSMUST00000122022 6115 ntAPPRIS ALT2 TSL 5 BASIC13.05□□□□□ -0.32
Trim3Q9R1R2 Phka1-202ENSMUST00000052012 6115 ntAPPRIS P4 TSL 1 (best) BASIC13.05□□□□□ -0.32
Trim3Q9R1R2 Slc9a3r2-202ENSMUST00000019684 1688 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Trim3Q9R1R2 Ubl4b-201ENSMUST00000052853 1387 ntAPPRIS P1 BASIC13.05□□□□□ -0.32
Trim3Q9R1R2 Zbtb4-202ENSMUST00000108639 7811 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Trim3Q9R1R2 Gpt-201ENSMUST00000023203 1749 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Trim3Q9R1R2 Dnajb12-205ENSMUST00000147914 3041 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
Trim3Q9R1R2 Wapl-205ENSMUST00000169910 4066 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
Trim3Q9R1R2 Sgms1-212ENSMUST00000151289 2488 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Trim3Q9R1R2 Rnf10-203ENSMUST00000112097 3476 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Trim3Q9R1R2 Eif4e3-201ENSMUST00000032151 2515 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Trim3Q9R1R2 Cep131-201ENSMUST00000106227 3578 ntAPPRIS P2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Trim3Q9R1R2 Cep131-202ENSMUST00000106229 3581 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Trim3Q9R1R2 Cep131-207ENSMUST00000180242 3581 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.32
Trim3Q9R1R2 Slc22a20-201ENSMUST00000041827 1897 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Retrieved 100 of 76,532 protein–RNA pairs in 42.4 ms