Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Rpl19-ps12-201ENSMUST00000121251 591 ntBASIC18.4■□□□□ 0.54
Scn4aQ9ER60 4930595D18Rik-201ENSMUST00000121608 818 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Scn4aQ9ER60 Gm12951-201ENSMUST00000150216 434 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Scn4aQ9ER60 Gm24845-201ENSMUST00000158034 109 ntBASIC18.4■□□□□ 0.54
Scn4aQ9ER60 Gm37229-201ENSMUST00000191643 732 ntTSL 3 BASIC18.4■□□□□ 0.54
Scn4aQ9ER60 Gm34023-201ENSMUST00000195539 217 ntBASIC18.4■□□□□ 0.54
Scn4aQ9ER60 Timm10b-210ENSMUST00000209588 373 ntTSL 3 BASIC18.4■□□□□ 0.54
Scn4aQ9ER60 Tepp-207ENSMUST00000212056 613 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
Scn4aQ9ER60 Tpd52l1-203ENSMUST00000213639 827 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
Scn4aQ9ER60 C330004P14Rik-201ENSMUST00000218833 628 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Scn4aQ9ER60 Gm32591-204ENSMUST00000208679 1806 ntTSL 5 BASIC18.4■□□□□ 0.54
Scn4aQ9ER60 Rasl10b-204ENSMUST00000175848 3249 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Scn4aQ9ER60 Foxa3-201ENSMUST00000036018 2037 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Scn4aQ9ER60 Trhr2-201ENSMUST00000044123 1340 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Scn4aQ9ER60 Tmem164-201ENSMUST00000087333 5149 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Scn4aQ9ER60 Cnbd2-201ENSMUST00000037096 2277 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Scn4aQ9ER60 Trim33-202ENSMUST00000106860 5025 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Scn4aQ9ER60 Mcrs1-201ENSMUST00000041190 1915 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Scn4aQ9ER60 Gab1-202ENSMUST00000210676 4985 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Scn4aQ9ER60 Jph4-202ENSMUST00000124493 3200 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Scn4aQ9ER60 Lyzl6-202ENSMUST00000107014 802 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Scn4aQ9ER60 Pmp22-202ENSMUST00000108700 733 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Scn4aQ9ER60 Gm6039-201ENSMUST00000121667 1250 ntBASIC18.39■□□□□ 0.54
Scn4aQ9ER60 Gm23218-201ENSMUST00000158124 276 ntBASIC18.39■□□□□ 0.54
Scn4aQ9ER60 Gm37028-201ENSMUST00000194276 107 ntBASIC18.39■□□□□ 0.54
Scn4aQ9ER60 Gm4797-201ENSMUST00000219075 1283 ntBASIC18.39■□□□□ 0.54
Scn4aQ9ER60 Sssca1-201ENSMUST00000025885 693 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Scn4aQ9ER60 Asb9-201ENSMUST00000033756 1139 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Scn4aQ9ER60 Gm10076-201ENSMUST00000073238 384 ntBASIC18.39■□□□□ 0.54
Scn4aQ9ER60 Tcf4-248ENSMUST00000202354 2120 ntTSL 5 BASIC18.39■□□□□ 0.54
Scn4aQ9ER60 Tcf4-257ENSMUST00000202772 2125 ntTSL 5 BASIC18.39■□□□□ 0.54
Scn4aQ9ER60 Daam2-202ENSMUST00000224595 1926 ntBASIC18.39■□□□□ 0.54
Scn4aQ9ER60 Gm10785-201ENSMUST00000156242 1583 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Scn4aQ9ER60 Irf3-201ENSMUST00000003284 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Scn4aQ9ER60 4930429D17Rik-201ENSMUST00000198193 1624 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Scn4aQ9ER60 Atp2a2-201ENSMUST00000031423 4486 ntAPPRIS P4 TSL 1 (best) BASIC18.39■□□□□ 0.53
Scn4aQ9ER60 Serf2-202ENSMUST00000110615 876 ntTSL 2 BASIC18.39■□□□□ 0.53
Scn4aQ9ER60 Rs1-202ENSMUST00000112368 731 ntTSL 3 BASIC18.39■□□□□ 0.53
Scn4aQ9ER60 Gm14058-201ENSMUST00000116082 735 ntBASIC18.39■□□□□ 0.53
Scn4aQ9ER60 Gm7541-201ENSMUST00000118361 535 ntBASIC18.39■□□□□ 0.53
Scn4aQ9ER60 2310074N15Rik-201ENSMUST00000198276 582 ntBASIC18.39■□□□□ 0.53
Scn4aQ9ER60 Mob2-203ENSMUST00000209732 977 ntAPPRIS ALT2 TSL 3 BASIC18.39■□□□□ 0.53
Scn4aQ9ER60 Gm45338-204ENSMUST00000210658 1105 ntTSL 5 BASIC18.39■□□□□ 0.53
Scn4aQ9ER60 AC163667.3-201ENSMUST00000225774 222 ntBASIC18.39■□□□□ 0.53
Scn4aQ9ER60 Emp3-201ENSMUST00000038876 736 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Scn4aQ9ER60 Phpt1-201ENSMUST00000039156 937 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Scn4aQ9ER60 4930564D02Rik-201ENSMUST00000070584 737 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Scn4aQ9ER60 Vav3-201ENSMUST00000046864 5019 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Scn4aQ9ER60 Gbx1-201ENSMUST00000088311 3475 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Scn4aQ9ER60 Bend7-201ENSMUST00000056914 2302 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
Scn4aQ9ER60 Spcs2-210ENSMUST00000209032 1610 ntTSL 5 BASIC18.39■□□□□ 0.53
Scn4aQ9ER60 2310022A10Rik-201ENSMUST00000067386 2701 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Scn4aQ9ER60 Exoc3l-201ENSMUST00000057855 2497 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Scn4aQ9ER60 Taf5-201ENSMUST00000026027 3258 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Scn4aQ9ER60 Cdc42ep2-201ENSMUST00000055458 1491 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Scn4aQ9ER60 Pex5l-206ENSMUST00000108226 2632 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Scn4aQ9ER60 Mir680-2-201ENSMUST00000102163 110 ntBASIC18.38■□□□□ 0.53
Scn4aQ9ER60 Gm23251-201ENSMUST00000103773 110 ntBASIC18.38■□□□□ 0.53
Scn4aQ9ER60 Rps19-ps11-201ENSMUST00000160308 433 ntBASIC18.38■□□□□ 0.53
Scn4aQ9ER60 Gm25072-201ENSMUST00000175233 235 ntBASIC18.38■□□□□ 0.53
Scn4aQ9ER60 Gm9463-201ENSMUST00000206707 601 ntBASIC18.38■□□□□ 0.53
Scn4aQ9ER60 Nrg1-218ENSMUST00000209107 2972 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
Scn4aQ9ER60 AC159376.1-201ENSMUST00000218504 630 ntBASIC18.38■□□□□ 0.53
Scn4aQ9ER60 Cyp11a1-201ENSMUST00000034874 2120 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Scn4aQ9ER60 Camk2b-203ENSMUST00000066431 1603 ntAPPRIS ALT1 TSL 5 BASIC18.38■□□□□ 0.53
Scn4aQ9ER60 Kcnn1-208ENSMUST00000212611 2528 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Scn4aQ9ER60 Igdcc3-201ENSMUST00000034961 3146 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Scn4aQ9ER60 Gm38157-201ENSMUST00000194178 1698 ntBASIC18.38■□□□□ 0.53
Scn4aQ9ER60 Rnf220-202ENSMUST00000094853 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Scn4aQ9ER60 Gm17089-201ENSMUST00000171098 1394 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Scn4aQ9ER60 Cenpb-201ENSMUST00000089510 4886 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
Scn4aQ9ER60 Wasf1-202ENSMUST00000105509 2719 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
Scn4aQ9ER60 Smg9-201ENSMUST00000002280 2242 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Scn4aQ9ER60 Siglecg-201ENSMUST00000005592 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Scn4aQ9ER60 Dap3-201ENSMUST00000090938 4760 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Scn4aQ9ER60 AI849053-201ENSMUST00000181021 2658 ntTSL 3 BASIC18.37■□□□□ 0.53
Scn4aQ9ER60 Tm2d3-203ENSMUST00000107495 1003 ntAPPRIS P4 TSL 5 BASIC18.37■□□□□ 0.53
Scn4aQ9ER60 Eif5a-206ENSMUST00000108609 849 ntAPPRIS P1 TSL 3 BASIC18.37■□□□□ 0.53
Scn4aQ9ER60 Gm13035-201ENSMUST00000117496 342 ntBASIC18.37■□□□□ 0.53
Scn4aQ9ER60 Igfbp2-202ENSMUST00000120564 991 ntTSL 3 BASIC18.37■□□□□ 0.53
Scn4aQ9ER60 Gm53-203ENSMUST00000143887 757 ntTSL 3 BASIC18.37■□□□□ 0.53
Scn4aQ9ER60 Zfp637-210ENSMUST00000164472 1098 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Scn4aQ9ER60 Ank3-234ENSMUST00000182993 1233 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Scn4aQ9ER60 Stpg4-202ENSMUST00000186211 591 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
Scn4aQ9ER60 Gm32999-201ENSMUST00000192693 562 ntBASIC18.37■□□□□ 0.53
Scn4aQ9ER60 5330425B07Rik-201ENSMUST00000196714 1027 ntBASIC18.37■□□□□ 0.53
Scn4aQ9ER60 Gm43634-201ENSMUST00000202671 675 ntTSL 3 BASIC18.37■□□□□ 0.53
Scn4aQ9ER60 AC140375.1-201ENSMUST00000225421 694 ntBASIC18.37■□□□□ 0.53
Scn4aQ9ER60 Neil1-201ENSMUST00000034842 1170 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Scn4aQ9ER60 Zcchc11-201ENSMUST00000043368 6054 ntAPPRIS P2 TSL 5 BASIC18.37■□□□□ 0.53
Scn4aQ9ER60 Irx3os-203ENSMUST00000133528 1354 ntTSL 5 BASIC18.37■□□□□ 0.53
Scn4aQ9ER60 Txndc12-201ENSMUST00000030296 1359 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Scn4aQ9ER60 Smad1-202ENSMUST00000066091 3099 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Scn4aQ9ER60 Tcf4-253ENSMUST00000202610 1959 ntTSL 5 BASIC18.37■□□□□ 0.53
Scn4aQ9ER60 Hnrnpll-201ENSMUST00000061331 3116 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
Scn4aQ9ER60 Fgf18-202ENSMUST00000109363 991 ntTSL 3 BASIC18.37■□□□□ 0.53
Scn4aQ9ER60 Gm11941-201ENSMUST00000119904 610 ntBASIC18.37■□□□□ 0.53
Scn4aQ9ER60 Rpl36-ps4-201ENSMUST00000179601 354 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
Scn4aQ9ER60 Gm45338-201ENSMUST00000209198 820 ntTSL 5 BASIC18.37■□□□□ 0.53
Scn4aQ9ER60 Mirg-202ENSMUST00000181543 1300 ntTSL 5 BASIC18.37■□□□□ 0.53
Retrieved 100 of 76,532 protein–RNA pairs in 44 ms