Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Slc27a1-201ENSMUST00000034267 2795 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Cdc40Q9DC48 Acrbp-205ENSMUST00000112414 1498 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Cdc40Q9DC48 Adk-207ENSMUST00000224069 1818 ntAPPRIS ALT1 BASIC12.9□□□□□ -0.34
Cdc40Q9DC48 Hcrtr1-201ENSMUST00000030562 2187 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Cdc40Q9DC48 Gm37411-201ENSMUST00000194180 2282 ntBASIC12.9□□□□□ -0.35
Cdc40Q9DC48 Dpysl5-203ENSMUST00000114729 5191 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.35
Cdc40Q9DC48 Zfp628-201ENSMUST00000116354 3523 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cdc40Q9DC48 Itga3-203ENSMUST00000120375 4697 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cdc40Q9DC48 Cacna1g-204ENSMUST00000107785 7523 ntAPPRIS ALT2 TSL 5 BASIC12.89□□□□□ -0.35
Cdc40Q9DC48 Casc3-204ENSMUST00000169695 3741 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cdc40Q9DC48 Cadps2-209ENSMUST00000142913 4533 ntAPPRIS ALT2 TSL 5 BASIC12.89□□□□□ -0.35
Cdc40Q9DC48 Gm9109-201ENSMUST00000120254 1405 ntBASIC12.89□□□□□ -0.35
Cdc40Q9DC48 G3bp2-209ENSMUST00000202258 1884 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cdc40Q9DC48 Ddx42-201ENSMUST00000021046 4011 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cdc40Q9DC48 Rxra-203ENSMUST00000113934 1989 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Cdc40Q9DC48 Traf1-201ENSMUST00000028234 2069 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
Cdc40Q9DC48 Psmc3-202ENSMUST00000067663 1636 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cdc40Q9DC48 Keap1-205ENSMUST00000194542 3151 ntAPPRIS P2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cdc40Q9DC48 Efs-201ENSMUST00000022813 2705 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cdc40Q9DC48 Gigyf2-201ENSMUST00000027475 5724 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cdc40Q9DC48 Rgs20-203ENSMUST00000119256 883 ntAPPRIS ALT2 TSL 3 BASIC12.89□□□□□ -0.35
Cdc40Q9DC48 Rpl34-203ENSMUST00000133802 711 ntTSL 2 BASIC12.89□□□□□ -0.35
Cdc40Q9DC48 Sf3a2-204ENSMUST00000151928 781 ntTSL 5 BASIC12.89□□□□□ -0.35
Cdc40Q9DC48 Gm16091-201ENSMUST00000156664 963 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Cdc40Q9DC48 Gm8584-201ENSMUST00000171982 758 ntBASIC12.89□□□□□ -0.35
Cdc40Q9DC48 Cplx3-202ENSMUST00000215487 594 ntTSL 3 BASIC12.89□□□□□ -0.35
Cdc40Q9DC48 AC131690.1-201ENSMUST00000218406 374 ntBASIC12.89□□□□□ -0.35
Cdc40Q9DC48 Nradd-201ENSMUST00000035069 1223 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cdc40Q9DC48 Cep126-201ENSMUST00000037397 3819 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cdc40Q9DC48 Mir125a-201ENSMUST00000083545 68 ntBASIC12.89□□□□□ -0.35
Cdc40Q9DC48 F420014N23Rik-201ENSMUST00000181578 2396 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Cdc40Q9DC48 Nfasc-208ENSMUST00000188307 3049 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Cdc40Q9DC48 Gcnt2-205ENSMUST00000225759 1366 ntAPPRIS ALT2 BASIC12.89□□□□□ -0.35
Cdc40Q9DC48 Ccser2-202ENSMUST00000090024 7509 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cdc40Q9DC48 Ncor2-205ENSMUST00000111398 8808 ntAPPRIS ALT2 TSL 5 BASIC12.89□□□□□ -0.35
Cdc40Q9DC48 Depdc1b-201ENSMUST00000051594 2563 ntAPPRIS P2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cdc40Q9DC48 Trim27-206ENSMUST00000222544 4312 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
Cdc40Q9DC48 Mief1-201ENSMUST00000023048 5081 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cdc40Q9DC48 Ikzf4-201ENSMUST00000133342 5150 ntAPPRIS P1 TSL 2 BASIC12.89□□□□□ -0.35
Cdc40Q9DC48 Tmem30a-202ENSMUST00000120690 3627 ntAPPRIS ALT2 TSL 5 BASIC12.89□□□□□ -0.35
Cdc40Q9DC48 Klhdc8b-207ENSMUST00000193286 2956 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cdc40Q9DC48 Rtkn-202ENSMUST00000087938 3080 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cdc40Q9DC48 Smim13-201ENSMUST00000165561 4483 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cdc40Q9DC48 Zkscan4-201ENSMUST00000062609 2400 ntAPPRIS P1 TSL 2 BASIC12.89□□□□□ -0.35
Cdc40Q9DC48 Prdm10-202ENSMUST00000117389 1952 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Cdc40Q9DC48 Pde4d-203ENSMUST00000117420 1955 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Cdc40Q9DC48 Tuft1-203ENSMUST00000196655 2156 ntTSL 5 BASIC12.88□□□□□ -0.35
Cdc40Q9DC48 Ssbp2-201ENSMUST00000004094 3957 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdc40Q9DC48 Retreg1-202ENSMUST00000110438 1526 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdc40Q9DC48 Gm6159-201ENSMUST00000191249 1724 ntBASIC12.88□□□□□ -0.35
Cdc40Q9DC48 Tmem38b-201ENSMUST00000030127 2862 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdc40Q9DC48 Pip5k1c-201ENSMUST00000045469 4323 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdc40Q9DC48 Msh2-201ENSMUST00000024967 3283 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdc40Q9DC48 Rhobtb1-210ENSMUST00000167384 2331 ntTSL 5 BASIC12.88□□□□□ -0.35
Cdc40Q9DC48 Barhl2-201ENSMUST00000086795 2314 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdc40Q9DC48 Ighv5-17-201ENSMUST00000103459 405 ntAPPRIS P1 BASIC12.88□□□□□ -0.35
Cdc40Q9DC48 Icam4-201ENSMUST00000001040 971 ntAPPRIS P2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdc40Q9DC48 Myl4-203ENSMUST00000106957 943 ntAPPRIS P1 TSL 3 BASIC12.88□□□□□ -0.35
Cdc40Q9DC48 Gm15957-201ENSMUST00000118893 974 ntBASIC12.88□□□□□ -0.35
Cdc40Q9DC48 Gm12212-201ENSMUST00000141032 378 ntTSL 3 BASIC12.88□□□□□ -0.35
Cdc40Q9DC48 Gm5108-201ENSMUST00000177891 543 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdc40Q9DC48 Gm3436-201ENSMUST00000179930 840 ntBASIC12.88□□□□□ -0.35
Cdc40Q9DC48 Gm29667-201ENSMUST00000190817 490 ntBASIC12.88□□□□□ -0.35
Cdc40Q9DC48 Gm37267-201ENSMUST00000194222 681 ntTSL 2 BASIC12.88□□□□□ -0.35
Cdc40Q9DC48 Cxcl17-202ENSMUST00000200880 760 ntAPPRIS P2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdc40Q9DC48 B9d2-202ENSMUST00000205325 593 ntTSL 2 BASIC12.88□□□□□ -0.35
Cdc40Q9DC48 Gm44608-201ENSMUST00000206827 855 ntBASIC12.88□□□□□ -0.35
Cdc40Q9DC48 AC121598.1-201ENSMUST00000228224 1019 ntBASIC12.88□□□□□ -0.35
Cdc40Q9DC48 Mt1-201ENSMUST00000034215 549 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdc40Q9DC48 Ufsp1-201ENSMUST00000052825 1037 ntAPPRIS P1 BASIC12.88□□□□□ -0.35
Cdc40Q9DC48 Cxcl17-201ENSMUST00000074040 761 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
Cdc40Q9DC48 Ppt2-210ENSMUST00000171376 1750 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdc40Q9DC48 Tdrp-201ENSMUST00000062613 2463 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdc40Q9DC48 Syt12-201ENSMUST00000059295 3581 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdc40Q9DC48 Wapl-205ENSMUST00000169910 4066 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdc40Q9DC48 Asap1-217ENSMUST00000177371 6164 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdc40Q9DC48 Alx4-202ENSMUST00000111254 7056 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Cdc40Q9DC48 Arf2-201ENSMUST00000057921 2242 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdc40Q9DC48 Il18r1-203ENSMUST00000167723 1919 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Cdc40Q9DC48 Alox8-202ENSMUST00000094078 1947 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
Cdc40Q9DC48 Syt10-201ENSMUST00000029441 1845 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdc40Q9DC48 Gpt-201ENSMUST00000023203 1749 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdc40Q9DC48 Trnt1-204ENSMUST00000113249 1614 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdc40Q9DC48 Mgat3-201ENSMUST00000044970 4665 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdc40Q9DC48 Dap3-207ENSMUST00000173135 1409 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
Cdc40Q9DC48 Mrps9-201ENSMUST00000057208 1418 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdc40Q9DC48 Tmem86b-202ENSMUST00000205360 1344 ntTSL 2 BASIC12.88□□□□□ -0.35
Cdc40Q9DC48 Trim32-201ENSMUST00000050850 3194 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Cdc40Q9DC48 Ppp4r3b-201ENSMUST00000020755 5125 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Cdc40Q9DC48 Cyp1b1-201ENSMUST00000024894 5128 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Cdc40Q9DC48 Zdhhc7-201ENSMUST00000034280 3069 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Cdc40Q9DC48 B4galnt1-201ENSMUST00000006914 2395 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Cdc40Q9DC48 Slc22a20-201ENSMUST00000041827 1897 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Cdc40Q9DC48 Fam19a2-201ENSMUST00000050756 4364 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Cdc40Q9DC48 Eif4g1-205ENSMUST00000115461 5507 ntAPPRIS ALT2 TSL 5 BASIC12.87□□□□□ -0.35
Cdc40Q9DC48 Col9a2-201ENSMUST00000030372 2924 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Cdc40Q9DC48 Pds5b-201ENSMUST00000016569 7417 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
Cdc40Q9DC48 Palb2-201ENSMUST00000063587 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Cdc40Q9DC48 Anapc15-204ENSMUST00000106973 650 ntAPPRIS P1 TSL 2 BASIC12.87□□□□□ -0.35
Cdc40Q9DC48 Rph3al-203ENSMUST00000108420 695 ntTSL 3 BASIC12.87□□□□□ -0.35
Retrieved 100 of 76,532 protein–RNA pairs in 27.5 ms