Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 Rps5-201ENSMUST00000004554 761 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Usf1Q61069 Rnf207-201ENSMUST00000076183 2466 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Usf1Q61069 Gm24447-201ENSMUST00000083977 338 ntBASIC12.58□□□□□ -0.4
Usf1Q61069 Ube3a-201ENSMUST00000107537 4911 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Usf1Q61069 Gm29340-201ENSMUST00000188763 3854 ntBASIC12.58□□□□□ -0.4
Usf1Q61069 Arf3-201ENSMUST00000053183 3579 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Usf1Q61069 Fgfr3-201ENSMUST00000067150 4218 ntAPPRIS P4 TSL 1 (best) BASIC12.58□□□□□ -0.4
Usf1Q61069 4930558J18Rik-201ENSMUST00000181949 2052 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Usf1Q61069 Gm14812-201ENSMUST00000156494 1794 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Usf1Q61069 Cfp-201ENSMUST00000001156 1636 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Usf1Q61069 Srrm1-208ENSMUST00000136342 3152 ntAPPRIS P3 TSL 5 BASIC12.58□□□□□ -0.4
Usf1Q61069 Dtd2-201ENSMUST00000021339 2564 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Usf1Q61069 Fasn-201ENSMUST00000055655 10050 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Usf1Q61069 AC168058.1-201ENSMUST00000219521 2282 ntBASIC12.58□□□□□ -0.4
Usf1Q61069 Gdf3-201ENSMUST00000032211 2125 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Usf1Q61069 Trip4-201ENSMUST00000117083 1999 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Usf1Q61069 Cuedc2-201ENSMUST00000051234 1833 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
Usf1Q61069 Cxadr-202ENSMUST00000114229 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Usf1Q61069 Fgf13-201ENSMUST00000033473 2499 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Usf1Q61069 Hhat-201ENSMUST00000044190 2839 ntAPPRIS P2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Usf1Q61069 Arhgap26-201ENSMUST00000097593 7898 ntAPPRIS P2 TSL 5 BASIC12.57□□□□□ -0.4
Usf1Q61069 Nprl3-201ENSMUST00000020530 2865 ntAPPRIS P2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Usf1Q61069 Nap1l4-206ENSMUST00000208190 2259 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Usf1Q61069 Ttll3-202ENSMUST00000038889 3114 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
Usf1Q61069 Mir698-201ENSMUST00000102164 109 ntBASIC12.57□□□□□ -0.4
Usf1Q61069 Gm22018-201ENSMUST00000104357 131 ntBASIC12.57□□□□□ -0.4
Usf1Q61069 Ppih-203ENSMUST00000106318 800 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Usf1Q61069 Agbl3-202ENSMUST00000115012 790 ntTSL 3 BASIC12.57□□□□□ -0.4
Usf1Q61069 Agbl3-203ENSMUST00000115014 805 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Usf1Q61069 Gng7-205ENSMUST00000118465 875 ntAPPRIS ALT1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Usf1Q61069 Ptgr2-205ENSMUST00000135001 1286 ntTSL 5 BASIC12.57□□□□□ -0.4
Usf1Q61069 Gm12843-201ENSMUST00000137607 601 ntTSL 3 BASIC12.57□□□□□ -0.4
Usf1Q61069 Men1-210ENSMUST00000166909 295 ntTSL 3 BASIC12.57□□□□□ -0.4
Usf1Q61069 Cd180-203ENSMUST00000170878 842 ntTSL 3 BASIC12.57□□□□□ -0.4
Usf1Q61069 Cd180-205ENSMUST00000172138 518 ntTSL 2 BASIC12.57□□□□□ -0.4
Usf1Q61069 Dnm3os-203ENSMUST00000185878 557 ntTSL 5 BASIC12.57□□□□□ -0.4
Usf1Q61069 Lsmem2-201ENSMUST00000191791 369 ntTSL 3 BASIC12.57□□□□□ -0.4
Usf1Q61069 Gm37466-201ENSMUST00000195692 652 ntBASIC12.57□□□□□ -0.4
Usf1Q61069 Gm35409-201ENSMUST00000196412 1102 ntTSL 5 BASIC12.57□□□□□ -0.4
Usf1Q61069 Nkiras2-202ENSMUST00000051947 831 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Usf1Q61069 Cdhr5-201ENSMUST00000080654 2133 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
Usf1Q61069 Tldc2-201ENSMUST00000099140 608 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
Usf1Q61069 Yap1-201ENSMUST00000065353 4171 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Usf1Q61069 Gm11638-201ENSMUST00000153672 1615 ntTSL 2 BASIC12.57□□□□□ -0.4
Usf1Q61069 Ptprv-210ENSMUST00000183317 6108 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Usf1Q61069 Gm13730-201ENSMUST00000121036 1462 ntBASIC12.57□□□□□ -0.4
Usf1Q61069 Apoa4-201ENSMUST00000034585 1815 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Usf1Q61069 Tnn-201ENSMUST00000039178 5817 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Usf1Q61069 Chdh-201ENSMUST00000067620 5690 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Usf1Q61069 Neurog3-201ENSMUST00000050103 1540 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Usf1Q61069 Alkbh4-202ENSMUST00000100568 1714 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
Usf1Q61069 Kat2a-201ENSMUST00000006973 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Usf1Q61069 Ptx4-201ENSMUST00000054930 1582 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Usf1Q61069 Etv3-202ENSMUST00000119109 5309 ntAPPRIS P2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Usf1Q61069 Arid3a-203ENSMUST00000105377 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Usf1Q61069 Kmt5b-213ENSMUST00000176262 3933 ntAPPRIS P3 TSL 5 BASIC12.56□□□□□ -0.4
Usf1Q61069 Rpa2-201ENSMUST00000102561 1813 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Usf1Q61069 Mettl3-201ENSMUST00000022767 2025 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Usf1Q61069 Gm12347-201ENSMUST00000127883 470 ntTSL 3 BASIC12.56□□□□□ -0.4
Usf1Q61069 Ccdc103-202ENSMUST00000159834 1156 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Usf1Q61069 Gm2164-201ENSMUST00000184062 424 ntTSL 2 BASIC12.56□□□□□ -0.4
Usf1Q61069 Gm29741-201ENSMUST00000192667 421 ntBASIC12.56□□□□□ -0.4
Usf1Q61069 Gm43118-201ENSMUST00000199149 775 ntBASIC12.56□□□□□ -0.4
Usf1Q61069 Snhg8-203ENSMUST00000199645 528 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Usf1Q61069 4930502C17Rik-201ENSMUST00000200282 948 ntBASIC12.56□□□□□ -0.4
Usf1Q61069 Msra-205ENSMUST00000210428 1180 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Usf1Q61069 Tmem205-203ENSMUST00000213698 705 ntAPPRIS P1 TSL 3 BASIC12.56□□□□□ -0.4
Usf1Q61069 Gsdma3-201ENSMUST00000073295 1477 ntAPPRIS P2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Usf1Q61069 Psrc1-202ENSMUST00000102629 1687 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Usf1Q61069 Map2k6-202ENSMUST00000100260 2088 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Usf1Q61069 Cep63-201ENSMUST00000093791 2696 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Usf1Q61069 Sema3b-202ENSMUST00000102529 2875 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Usf1Q61069 Rarb-201ENSMUST00000063750 3108 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Usf1Q61069 Tdrd5-201ENSMUST00000121146 3759 ntAPPRIS P2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Usf1Q61069 Rps6ka5-201ENSMUST00000043599 4406 ntAPPRIS P2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Usf1Q61069 Sez6-202ENSMUST00000093995 4239 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
Usf1Q61069 Aifm3-202ENSMUST00000115685 2357 ntAPPRIS ALT1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Usf1Q61069 Nek7-202ENSMUST00000186017 5258 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Usf1Q61069 B130055M24Rik-201ENSMUST00000144796 1778 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Usf1Q61069 Gm17705-201ENSMUST00000172285 1555 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Usf1Q61069 Klhl26-204ENSMUST00000209567 2615 ntTSL 3 BASIC12.56□□□□□ -0.4
Usf1Q61069 Igsf5-202ENSMUST00000081093 1554 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Usf1Q61069 Suv39h2-201ENSMUST00000027956 4327 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Usf1Q61069 Akirin1-201ENSMUST00000102636 3052 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Usf1Q61069 Elf4-202ENSMUST00000114958 6088 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Usf1Q61069 Ak1-201ENSMUST00000068271 2034 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Usf1Q61069 Txnrd3-202ENSMUST00000101171 2494 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Usf1Q61069 Pdia3-201ENSMUST00000028683 2770 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Usf1Q61069 Kif21b-201ENSMUST00000075164 9115 ntAPPRIS P1 TSL 2 BASIC12.55□□□□□ -0.4
Usf1Q61069 Tdrd7-201ENSMUST00000102929 3716 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
Usf1Q61069 Il11-201ENSMUST00000094892 1949 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Usf1Q61069 Opn4-201ENSMUST00000022331 2156 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
Usf1Q61069 Phldb1-212ENSMUST00000138356 5600 ntTSL 5 BASIC12.55□□□□□ -0.4
Usf1Q61069 Nop58-201ENSMUST00000027174 1713 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
Usf1Q61069 Scrt1-201ENSMUST00000096365 4010 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Usf1Q61069 Fgf8-203ENSMUST00000111924 630 ntTSL 5 BASIC12.55□□□□□ -0.4
Usf1Q61069 Gm5687-201ENSMUST00000118252 640 ntBASIC12.55□□□□□ -0.4
Usf1Q61069 0610037L13Rik-205ENSMUST00000119394 741 ntTSL 3 BASIC12.55□□□□□ -0.4
Usf1Q61069 Gm16124-201ENSMUST00000146938 516 ntTSL 2 BASIC12.55□□□□□ -0.4
Usf1Q61069 Cmc4-203ENSMUST00000149863 507 ntAPPRIS P1 TSL 3 BASIC12.55□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 32.1 ms