Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Gm5934-201ENSMUST00000120734 2588 ntAPPRIS P1 TSL 5 BASIC11.8□□□□□ -0.52
Col8a1Q00780 Tbx6-201ENSMUST00000094037 1727 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Col8a1Q00780 9330182L06Rik-201ENSMUST00000069538 4688 ntAPPRIS P2 TSL 1 (best) BASIC11.8□□□□□ -0.52
Col8a1Q00780 Wt1-202ENSMUST00000111099 2441 ntTSL 5 BASIC11.8□□□□□ -0.52
Col8a1Q00780 Rnf138-201ENSMUST00000052396 3110 ntAPPRIS P1 TSL 5 BASIC11.8□□□□□ -0.52
Col8a1Q00780 Arid1b-202ENSMUST00000115797 11325 ntAPPRIS P2 TSL 5 BASIC11.8□□□□□ -0.52
Col8a1Q00780 Dzip3-201ENSMUST00000114516 3331 ntAPPRIS P3 TSL 1 (best) BASIC11.8□□□□□ -0.52
Col8a1Q00780 Car7-202ENSMUST00000159416 1943 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Col8a1Q00780 Pomt2-201ENSMUST00000037788 5064 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Col8a1Q00780 Pigg-203ENSMUST00000119014 4573 ntAPPRIS ALT2 TSL 5 BASIC11.8□□□□□ -0.52
Col8a1Q00780 Rnf11-201ENSMUST00000030284 4061 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Col8a1Q00780 Nomo1-201ENSMUST00000033121 4257 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Col8a1Q00780 Slc39a11-203ENSMUST00000106633 2688 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
Col8a1Q00780 4933409G03Rik-201ENSMUST00000102713 1263 ntAPPRIS P2 TSL 1 (best) BASIC11.8□□□□□ -0.52
Col8a1Q00780 Wfdc9-202ENSMUST00000109335 547 ntAPPRIS P1 TSL 5 BASIC11.8□□□□□ -0.52
Col8a1Q00780 Mrpl2-203ENSMUST00000113430 991 ntAPPRIS ALT2 TSL 5 BASIC11.8□□□□□ -0.52
Col8a1Q00780 Gm11524-201ENSMUST00000119349 807 ntBASIC11.8□□□□□ -0.52
Col8a1Q00780 Atcayos-202ENSMUST00000129950 1117 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Col8a1Q00780 Gm16229-201ENSMUST00000133270 1232 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Col8a1Q00780 Bik-201ENSMUST00000016902 943 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Col8a1Q00780 1600014C23Rik-201ENSMUST00000178179 518 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Col8a1Q00780 Gm24196-201ENSMUST00000179161 110 ntBASIC11.8□□□□□ -0.52
Col8a1Q00780 Gm28380-201ENSMUST00000188800 385 ntTSL 5 BASIC11.8□□□□□ -0.52
Col8a1Q00780 Gm19309-201ENSMUST00000218295 205 ntBASIC11.8□□□□□ -0.52
Col8a1Q00780 Ndufb3-201ENSMUST00000027193 763 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Col8a1Q00780 Lim2-201ENSMUST00000004732 884 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Col8a1Q00780 Cby3-201ENSMUST00000052596 703 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Col8a1Q00780 Olfr54-201ENSMUST00000072152 942 ntAPPRIS P1 BASIC11.8□□□□□ -0.52
Col8a1Q00780 Olfr1375-201ENSMUST00000073543 942 ntAPPRIS P1 BASIC11.8□□□□□ -0.52
Col8a1Q00780 A430035B10Rik-204ENSMUST00000148063 2010 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Col8a1Q00780 Fdx1-202ENSMUST00000214013 2759 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Col8a1Q00780 Trim2-203ENSMUST00000107691 7428 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Col8a1Q00780 Nrp2-204ENSMUST00000102822 6708 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
Col8a1Q00780 Cd151-202ENSMUST00000106000 1865 ntAPPRIS P1 TSL 5 BASIC11.8□□□□□ -0.52
Col8a1Q00780 Men1-207ENSMUST00000113503 1851 ntAPPRIS ALT2 TSL 5 BASIC11.8□□□□□ -0.52
Col8a1Q00780 Mettl2-201ENSMUST00000021030 1867 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Col8a1Q00780 Bicc1-201ENSMUST00000014473 3231 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Col8a1Q00780 Snx29-207ENSMUST00000180792 2667 ntAPPRIS P1 TSL 5 BASIC11.8□□□□□ -0.52
Col8a1Q00780 AI606473-201ENSMUST00000177201 1731 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Col8a1Q00780 Hnrnpm-201ENSMUST00000087582 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
Col8a1Q00780 Osbpl8-202ENSMUST00000105275 7204 ntAPPRIS ALT1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Col8a1Q00780 Micall2-201ENSMUST00000044642 3346 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Col8a1Q00780 Zfp618-203ENSMUST00000107415 8826 ntAPPRIS ALT2 TSL 5 BASIC11.8□□□□□ -0.52
Col8a1Q00780 Bpifa6-201ENSMUST00000109753 1572 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Col8a1Q00780 Tor1aip1-201ENSMUST00000027738 1952 ntAPPRIS P3 TSL 1 (best) BASIC11.79□□□□□ -0.52
Col8a1Q00780 Rrp1-201ENSMUST00000062678 1984 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Col8a1Q00780 Cpne6-201ENSMUST00000074225 2201 ntAPPRIS P3 TSL 1 (best) BASIC11.79□□□□□ -0.52
Col8a1Q00780 Oas1b-203ENSMUST00000183291 1837 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Col8a1Q00780 Gm4858-202ENSMUST00000194595 1810 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Col8a1Q00780 Mpped1-201ENSMUST00000046168 3265 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Col8a1Q00780 Raf1-201ENSMUST00000000451 3070 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Col8a1Q00780 Gm11960-202ENSMUST00000181063 2858 ntBASIC11.79□□□□□ -0.52
Col8a1Q00780 Zfp362-201ENSMUST00000071108 2674 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Col8a1Q00780 Parg-202ENSMUST00000163350 3374 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Col8a1Q00780 Txn2-202ENSMUST00000100486 676 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Col8a1Q00780 Itk-202ENSMUST00000101306 1185 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Col8a1Q00780 Mir877-201ENSMUST00000104738 85 ntBASIC11.79□□□□□ -0.52
Col8a1Q00780 Gm15240-201ENSMUST00000118156 720 ntBASIC11.79□□□□□ -0.52
Col8a1Q00780 Spdye4b-202ENSMUST00000159781 1128 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Col8a1Q00780 Gm38002-201ENSMUST00000193255 180 ntBASIC11.79□□□□□ -0.52
Col8a1Q00780 Gm9176-201ENSMUST00000219955 1120 ntBASIC11.79□□□□□ -0.52
Col8a1Q00780 Isoc2b-201ENSMUST00000064547 1080 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Col8a1Q00780 Gm9955-201ENSMUST00000067987 309 ntAPPRIS P1 BASIC11.79□□□□□ -0.52
Col8a1Q00780 6430531B16Rik-201ENSMUST00000097970 1161 ntAPPRIS P3 TSL 1 (best) BASIC11.79□□□□□ -0.52
Col8a1Q00780 Tmem2-202ENSMUST00000096194 6667 ntAPPRIS P1 TSL 5 BASIC11.79□□□□□ -0.52
Col8a1Q00780 Nup54-201ENSMUST00000038514 2352 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Col8a1Q00780 Vps51-204ENSMUST00000159832 3048 ntAPPRIS P1 TSL 5 BASIC11.79□□□□□ -0.52
Col8a1Q00780 Zfp574-202ENSMUST00000179556 4140 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Col8a1Q00780 Nabp1-201ENSMUST00000027279 2838 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Col8a1Q00780 Disp2-202ENSMUST00000063975 1505 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Col8a1Q00780 Adgrb2-202ENSMUST00000097868 4635 ntAPPRIS ALT2 TSL 5 BASIC11.79□□□□□ -0.52
Col8a1Q00780 Acp5-202ENSMUST00000115315 1349 ntAPPRIS P1 TSL 2 BASIC11.79□□□□□ -0.52
Col8a1Q00780 Kdm5c-203ENSMUST00000112588 6449 ntAPPRIS P2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Col8a1Q00780 Ap5m1-205ENSMUST00000227431 3757 ntBASIC11.79□□□□□ -0.52
Col8a1Q00780 Fgfr2-207ENSMUST00000117872 4223 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Col8a1Q00780 Gm16425-201ENSMUST00000118143 3130 ntBASIC11.79□□□□□ -0.52
Col8a1Q00780 Zfp36-202ENSMUST00000209061 2465 ntAPPRIS ALT2 BASIC11.79□□□□□ -0.52
Col8a1Q00780 Gm12846-201ENSMUST00000120431 1373 ntBASIC11.79□□□□□ -0.52
Col8a1Q00780 Psmb9-204ENSMUST00000174576 1351 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Col8a1Q00780 Gm45133-201ENSMUST00000207548 2773 ntBASIC11.79□□□□□ -0.52
Col8a1Q00780 Fam76b-201ENSMUST00000059579 3702 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Col8a1Q00780 Myo1d-201ENSMUST00000041065 5354 ntAPPRIS P1 TSL 5 BASIC11.78□□□□□ -0.52
Col8a1Q00780 Zmym3-208ENSMUST00000121429 1890 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Col8a1Q00780 L2hgdh-201ENSMUST00000021370 3340 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Col8a1Q00780 Prok2-202ENSMUST00000032152 1423 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Col8a1Q00780 Mecp2-203ENSMUST00000123362 1675 ntTSL 5 BASIC11.78□□□□□ -0.52
Col8a1Q00780 Ushbp1-201ENSMUST00000049184 2438 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Col8a1Q00780 Camta2-203ENSMUST00000108544 4632 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Col8a1Q00780 Tmem59l-201ENSMUST00000045286 1491 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Col8a1Q00780 Tbc1d5-205ENSMUST00000224528 4764 ntAPPRIS ALT2 BASIC11.78□□□□□ -0.52
Col8a1Q00780 Ccnt2-202ENSMUST00000112570 4511 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Col8a1Q00780 Fbn1-201ENSMUST00000028633 9847 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Col8a1Q00780 Hjurp-206ENSMUST00000147393 2030 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Col8a1Q00780 E230016M11Rik-201ENSMUST00000130657 1764 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Col8a1Q00780 Pcna-201ENSMUST00000028817 1518 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Col8a1Q00780 Thoc6-204ENSMUST00000115490 1157 ntTSL 5 BASIC11.78□□□□□ -0.52
Col8a1Q00780 Litaf-202ENSMUST00000117360 763 ntAPPRIS P1 TSL 3 BASIC11.78□□□□□ -0.52
Col8a1Q00780 Gm13612-201ENSMUST00000119276 390 ntBASIC11.78□□□□□ -0.52
Col8a1Q00780 Gm13342-201ENSMUST00000121055 207 ntBASIC11.78□□□□□ -0.52
Col8a1Q00780 Mypopos-201ENSMUST00000124897 560 ntTSL 3 BASIC11.78□□□□□ -0.52
Retrieved 100 of 76,532 protein–RNA pairs in 32 ms