Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Tshz2-202ENSMUST00000109159 4314 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Chmp6P0C0A3 Irf7-203ENSMUST00000106023 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Chmp6P0C0A3 Smim14-205ENSMUST00000139122 4560 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Chmp6P0C0A3 Gm4204-201ENSMUST00000110798 1231 ntBASIC15.11■□□□□ 0.01
Chmp6P0C0A3 Eef1akmt4-201ENSMUST00000115522 1130 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Chmp6P0C0A3 1700060J05Rik-201ENSMUST00000138377 1060 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Chmp6P0C0A3 Tm7sf2-209ENSMUST00000161528 732 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Chmp6P0C0A3 A930015D03Rik-201ENSMUST00000173900 1111 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Chmp6P0C0A3 Gm26935-201ENSMUST00000182686 519 ntTSL 5 BASIC15.11■□□□□ 0.01
Chmp6P0C0A3 Hist1h3h-201ENSMUST00000188775 411 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
Chmp6P0C0A3 Hist1h3i-201ENSMUST00000189457 411 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
Chmp6P0C0A3 Gm37596-201ENSMUST00000193565 1021 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
Chmp6P0C0A3 Ighv1-25-201ENSMUST00000195638 345 ntBASIC15.11■□□□□ 0.01
Chmp6P0C0A3 Gm9063-201ENSMUST00000223299 582 ntBASIC15.11■□□□□ 0.01
Chmp6P0C0A3 Myl6b-201ENSMUST00000026428 1026 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Chmp6P0C0A3 Ucn-201ENSMUST00000043475 504 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Chmp6P0C0A3 Gm40765-201ENSMUST00000218612 1469 ntTSL 5 BASIC15.11■□□□□ 0.01
Chmp6P0C0A3 P4hb-201ENSMUST00000026122 2861 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Chmp6P0C0A3 Il17re-202ENSMUST00000058548 2940 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Chmp6P0C0A3 Mgat1-202ENSMUST00000101293 2729 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Chmp6P0C0A3 Neu2-203ENSMUST00000164128 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Chmp6P0C0A3 Retreg1-202ENSMUST00000110438 1526 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Chmp6P0C0A3 Mdm1-208ENSMUST00000219087 1318 ntTSL 2 BASIC15.11■□□□□ 0.01
Chmp6P0C0A3 Ripor2-201ENSMUST00000038477 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Chmp6P0C0A3 R3hcc1-202ENSMUST00000121142 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Chmp6P0C0A3 Shc4-203ENSMUST00000110480 3671 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Chmp6P0C0A3 Dpp6-204ENSMUST00000122171 4720 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Chmp6P0C0A3 Unc119b-201ENSMUST00000060798 3659 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Chmp6P0C0A3 Nt5c3b-201ENSMUST00000092688 1399 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Chmp6P0C0A3 Cd3eap-201ENSMUST00000047036 2239 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Chmp6P0C0A3 Six3os1-211ENSMUST00000176958 2889 ntTSL 2 BASIC15.1■□□□□ 0.01
Chmp6P0C0A3 Camta2-203ENSMUST00000108544 4632 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Chmp6P0C0A3 Trem1-202ENSMUST00000113251 2077 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Chmp6P0C0A3 Krt18-201ENSMUST00000023803 1400 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Chmp6P0C0A3 Keap1-202ENSMUST00000164812 3614 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Chmp6P0C0A3 Arhgap33-203ENSMUST00000207858 4337 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Chmp6P0C0A3 Pde12-201ENSMUST00000052932 7725 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Chmp6P0C0A3 Arhgap8-205ENSMUST00000168811 1464 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Chmp6P0C0A3 Gm12428-201ENSMUST00000119844 727 ntBASIC15.1■□□□□ 0.01
Chmp6P0C0A3 Cd63-ps-201ENSMUST00000145417 875 ntBASIC15.1■□□□□ 0.01
Chmp6P0C0A3 Gm26517-201ENSMUST00000181279 1172 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Chmp6P0C0A3 Gm27680-201ENSMUST00000184192 160 ntBASIC15.1■□□□□ 0.01
Chmp6P0C0A3 Nabp1-202ENSMUST00000185534 708 ntTSL 2 BASIC15.1■□□□□ 0.01
Chmp6P0C0A3 Ifng-201ENSMUST00000068592 1208 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Chmp6P0C0A3 Cep85-201ENSMUST00000040271 3893 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Chmp6P0C0A3 Pigg-201ENSMUST00000031189 3427 ntAPPRIS P3 TSL 5 BASIC15.1■□□□□ 0.01
Chmp6P0C0A3 Car10-203ENSMUST00000107858 2742 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Chmp6P0C0A3 Angel2-202ENSMUST00000066632 3714 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Chmp6P0C0A3 Slc16a13-201ENSMUST00000060010 2531 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Chmp6P0C0A3 Ube2d-ps-205ENSMUST00000142942 1840 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Chmp6P0C0A3 Ash2l-202ENSMUST00000110608 2134 ntTSL 5 BASIC15.1■□□□□ 0.01
Chmp6P0C0A3 Dmrtc2-201ENSMUST00000011493 1619 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Chmp6P0C0A3 Serhl-201ENSMUST00000078218 1371 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Chmp6P0C0A3 Crem-201ENSMUST00000025069 2931 ntTSL 5 BASIC15.1■□□□□ 0.01
Chmp6P0C0A3 1810014B01Rik-201ENSMUST00000181587 1661 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Chmp6P0C0A3 Fahd1-201ENSMUST00000049642 1407 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
Chmp6P0C0A3 Celf4-203ENSMUST00000223704 2492 ntAPPRIS ALT1 BASIC15.09■□□□□ 0.01
Chmp6P0C0A3 Ift52-201ENSMUST00000018002 2248 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Chmp6P0C0A3 Rxra-203ENSMUST00000113934 1989 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Chmp6P0C0A3 Rdh10-201ENSMUST00000027053 3587 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Chmp6P0C0A3 Hnrnph2-201ENSMUST00000050331 1701 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
Chmp6P0C0A3 Paf1-201ENSMUST00000003529 2003 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Chmp6P0C0A3 Hoxa3-201ENSMUST00000114434 2591 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Chmp6P0C0A3 Catsper4-204ENSMUST00000169381 1506 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Chmp6P0C0A3 Mettl26-204ENSMUST00000169085 324 ntTSL 5 BASIC15.09■□□□□ 0.01
Chmp6P0C0A3 Vdac2-209ENSMUST00000173456 956 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
Chmp6P0C0A3 Gm28942-201ENSMUST00000186334 365 ntTSL 3 BASIC15.09■□□□□ 0.01
Chmp6P0C0A3 Gm33320-201ENSMUST00000192232 530 ntBASIC15.09■□□□□ 0.01
Chmp6P0C0A3 Gm9229-201ENSMUST00000222777 126 ntBASIC15.09■□□□□ 0.01
Chmp6P0C0A3 Lce1d-201ENSMUST00000029524 678 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Chmp6P0C0A3 Mesp1-201ENSMUST00000032760 1275 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Chmp6P0C0A3 Cep126-201ENSMUST00000037397 3819 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Chmp6P0C0A3 Gstm1-201ENSMUST00000004140 1289 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Chmp6P0C0A3 Rnf113a1-201ENSMUST00000046433 1223 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
Chmp6P0C0A3 Rpl10-ps2-201ENSMUST00000098432 645 ntBASIC15.09■□□□□ 0.01
Chmp6P0C0A3 Tjap1-211ENSMUST00000225080 2412 ntAPPRIS P2 BASIC15.09■□□□□ 0.01
Chmp6P0C0A3 Serpinh1-205ENSMUST00000208119 2173 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Chmp6P0C0A3 Zbtb25-204ENSMUST00000176278 1672 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Chmp6P0C0A3 Gm42769-201ENSMUST00000198576 1659 ntBASIC15.09■□□□□ 0.01
Chmp6P0C0A3 Nfatc2-202ENSMUST00000074618 6637 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
Chmp6P0C0A3 Cnot7-201ENSMUST00000034012 2615 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Chmp6P0C0A3 Ak1-201ENSMUST00000068271 2034 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Chmp6P0C0A3 Klhl12-203ENSMUST00000116528 3277 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
Chmp6P0C0A3 Cadps2-209ENSMUST00000142913 4533 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
Chmp6P0C0A3 Enpp1-203ENSMUST00000135846 2721 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0.01
Chmp6P0C0A3 Myo19-202ENSMUST00000093969 4091 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0.01
Chmp6P0C0A3 Zyg11b-201ENSMUST00000043616 8691 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Chmp6P0C0A3 Sept1-202ENSMUST00000106314 1486 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0.01
Chmp6P0C0A3 Pdlim3-203ENSMUST00000210422 1479 ntAPPRIS ALT1 TSL 5 BASIC15.08■□□□□ 0.01
Chmp6P0C0A3 Prx-203ENSMUST00000108355 5433 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Chmp6P0C0A3 Pds5b-201ENSMUST00000016569 7417 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0.01
Chmp6P0C0A3 Slc4a1ap-213ENSMUST00000202950 2499 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0.01
Chmp6P0C0A3 Tmem211-201ENSMUST00000086615 1827 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Chmp6P0C0A3 Fam20a-201ENSMUST00000020938 2541 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Chmp6P0C0A3 Acr-201ENSMUST00000023295 1504 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Chmp6P0C0A3 Col6a2-202ENSMUST00000105413 4653 ntTSL 1 (best) BASIC15.08■□□□□ 0
Chmp6P0C0A3 Cenpl-203ENSMUST00000111620 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Chmp6P0C0A3 1300017J02Rik-201ENSMUST00000035163 2284 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Chmp6P0C0A3 Kif1c-204ENSMUST00000137119 6596 ntAPPRIS P2 TSL 5 BASIC15.08■□□□□ 0
Chmp6P0C0A3 Krit1-211ENSMUST00000200386 2343 ntTSL 5 BASIC15.08■□□□□ 0
Retrieved 100 of 76,532 protein–RNA pairs in 26.2 ms