Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Pla2g2e-201ENSMUST00000030531 854 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Lmx1bO88609 Hilpda-201ENSMUST00000054445 982 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Lmx1bO88609 Tpd52-201ENSMUST00000063496 697 ntTSL 2 BASIC12.57□□□□□ -0.4
Lmx1bO88609 Gm15823-201ENSMUST00000064305 670 ntBASIC12.57□□□□□ -0.4
Lmx1bO88609 Hist1h3b-201ENSMUST00000091703 620 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
Lmx1bO88609 Polr2g-201ENSMUST00000096261 868 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Lmx1bO88609 Slc4a1ap-213ENSMUST00000202950 2499 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
Lmx1bO88609 Gm14452-201ENSMUST00000118680 1632 ntBASIC12.57□□□□□ -0.4
Lmx1bO88609 Gng4-201ENSMUST00000021734 3179 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Lmx1bO88609 Foxo4-201ENSMUST00000062000 3162 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Lmx1bO88609 Rrp1-201ENSMUST00000062678 1984 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Lmx1bO88609 Rhobtb1-210ENSMUST00000167384 2331 ntTSL 5 BASIC12.57□□□□□ -0.4
Lmx1bO88609 Zfp683-201ENSMUST00000105884 1471 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
Lmx1bO88609 Rpa2-201ENSMUST00000102561 1813 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Lmx1bO88609 Mzf1-204ENSMUST00000182490 2872 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Lmx1bO88609 Orai2-201ENSMUST00000041048 3908 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Lmx1bO88609 Tle3-201ENSMUST00000034820 4646 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Lmx1bO88609 Rab11fip2-201ENSMUST00000051996 4482 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Lmx1bO88609 Fbxo3-201ENSMUST00000028603 4740 ntAPPRIS P4 TSL 1 (best) BASIC12.57□□□□□ -0.4
Lmx1bO88609 Gnpda2-201ENSMUST00000031117 1894 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
Lmx1bO88609 Slc8a2-202ENSMUST00000211649 5261 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
Lmx1bO88609 Elovl6-205ENSMUST00000199910 2610 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Lmx1bO88609 Keap1-205ENSMUST00000194542 3151 ntAPPRIS P2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Lmx1bO88609 Adgrb2-206ENSMUST00000106018 4470 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
Lmx1bO88609 Gm45630-201ENSMUST00000210243 1911 ntBASIC12.56□□□□□ -0.4
Lmx1bO88609 Celf4-203ENSMUST00000223704 2492 ntAPPRIS ALT1 BASIC12.56□□□□□ -0.4
Lmx1bO88609 Amhr2-201ENSMUST00000023809 1938 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Lmx1bO88609 Evc-201ENSMUST00000031005 4325 ntAPPRIS P2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Lmx1bO88609 Palm-201ENSMUST00000046945 2651 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Lmx1bO88609 Cage1-202ENSMUST00000089840 3449 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Lmx1bO88609 Lrrc7-205ENSMUST00000200137 7321 ntAPPRIS P2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Lmx1bO88609 Syngr1-201ENSMUST00000009727 4180 ntAPPRIS P4 TSL 1 (best) BASIC12.56□□□□□ -0.4
Lmx1bO88609 AU040320-201ENSMUST00000047431 4384 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Lmx1bO88609 Ppt2-210ENSMUST00000171376 1750 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Lmx1bO88609 Kcnq2-207ENSMUST00000103050 2713 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
Lmx1bO88609 Otop3-202ENSMUST00000106543 2369 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Lmx1bO88609 Etfrf1-205ENSMUST00000111724 1618 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Lmx1bO88609 Gckr-201ENSMUST00000072228 2014 ntAPPRIS P2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Lmx1bO88609 Dgki-202ENSMUST00000090314 3784 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
Lmx1bO88609 Tmem218-201ENSMUST00000034632 2619 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Lmx1bO88609 Lzts3-203ENSMUST00000110260 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Lmx1bO88609 Gm5678-201ENSMUST00000120115 939 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
Lmx1bO88609 Mvk-203ENSMUST00000124260 1051 ntTSL 5 BASIC12.56□□□□□ -0.4
Lmx1bO88609 Gm12786-201ENSMUST00000129617 644 ntTSL 3 BASIC12.56□□□□□ -0.4
Lmx1bO88609 Gm11214-201ENSMUST00000184252 552 ntAPPRIS P1 BASIC12.56□□□□□ -0.4
Lmx1bO88609 Mir6392-201ENSMUST00000184924 108 ntBASIC12.56□□□□□ -0.4
Lmx1bO88609 1700072B07Rik-201ENSMUST00000191141 445 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Lmx1bO88609 Ighv8-14-201ENSMUST00000196781 358 ntBASIC12.56□□□□□ -0.4
Lmx1bO88609 Coq7-205ENSMUST00000209146 799 ntTSL 3 BASIC12.56□□□□□ -0.4
Lmx1bO88609 Gm18624-201ENSMUST00000220966 658 ntBASIC12.56□□□□□ -0.4
Lmx1bO88609 Mzt2-201ENSMUST00000023351 1035 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Lmx1bO88609 Oxt-201ENSMUST00000028764 537 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Lmx1bO88609 Pemt-201ENSMUST00000000310 953 ntAPPRIS P1 TSL 3 BASIC12.56□□□□□ -0.4
Lmx1bO88609 Ints3-202ENSMUST00000071488 4038 ntAPPRIS P2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Lmx1bO88609 Zfp747-201ENSMUST00000067425 2684 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Lmx1bO88609 Mapk7-202ENSMUST00000101085 3254 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Lmx1bO88609 Ranbp3-201ENSMUST00000002445 2511 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Lmx1bO88609 Mpp4-201ENSMUST00000066374 2344 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
Lmx1bO88609 Mpp4-202ENSMUST00000078874 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Lmx1bO88609 A3galt2-202ENSMUST00000106077 2114 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
Lmx1bO88609 Mpl-203ENSMUST00000106375 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Lmx1bO88609 Tbc1d4-210ENSMUST00000162617 4762 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
Lmx1bO88609 Zfp296-201ENSMUST00000108453 1530 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Lmx1bO88609 Pnck-201ENSMUST00000002087 1536 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Lmx1bO88609 Nt5c3b-202ENSMUST00000092689 1344 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Lmx1bO88609 Erbb2-201ENSMUST00000058295 5012 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Lmx1bO88609 Atp2a3-207ENSMUST00000163326 4606 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
Lmx1bO88609 Spred2-202ENSMUST00000093299 4449 ntTSL 5 BASIC12.56□□□□□ -0.4
Lmx1bO88609 Zfp853-201ENSMUST00000180336 1956 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
Lmx1bO88609 Synm-201ENSMUST00000051389 6953 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Lmx1bO88609 Cdhr5-202ENSMUST00000167263 2628 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Lmx1bO88609 Trim10-201ENSMUST00000060524 2245 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Lmx1bO88609 Rhbdl3-201ENSMUST00000017836 3736 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Lmx1bO88609 Slc8a3-201ENSMUST00000064594 4379 ntAPPRIS ALT1 TSL 5 BASIC12.55□□□□□ -0.4
Lmx1bO88609 Gm37411-201ENSMUST00000194180 2282 ntBASIC12.55□□□□□ -0.4
Lmx1bO88609 Slc4a4-207ENSMUST00000148750 7931 ntAPPRIS P3 TSL 5 BASIC12.55□□□□□ -0.4
Lmx1bO88609 Gins3-201ENSMUST00000034094 2519 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Lmx1bO88609 Ntn4-201ENSMUST00000020204 3646 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Lmx1bO88609 Camk2b-208ENSMUST00000109812 1875 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Lmx1bO88609 Olfr317-203ENSMUST00000216196 2781 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
Lmx1bO88609 Tcf12-201ENSMUST00000034755 4621 ntAPPRIS ALT1 TSL 5 BASIC12.55□□□□□ -0.4
Lmx1bO88609 Rnf34-201ENSMUST00000031434 4440 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Lmx1bO88609 Olfr718-ps1-203ENSMUST00000215102 4913 ntAPPRIS P5 TSL 5 BASIC12.55□□□□□ -0.4
Lmx1bO88609 Mob3c-201ENSMUST00000030477 2884 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Lmx1bO88609 Taok2-201ENSMUST00000071268 4720 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Lmx1bO88609 Rph3al-203ENSMUST00000108420 695 ntTSL 3 BASIC12.55□□□□□ -0.4
Lmx1bO88609 Ngb-202ENSMUST00000110176 908 ntTSL 3 BASIC12.55□□□□□ -0.4
Lmx1bO88609 H60b-202ENSMUST00000131558 1080 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
Lmx1bO88609 3110053B16Rik-204ENSMUST00000145605 575 ntBASIC12.55□□□□□ -0.4
Lmx1bO88609 Spata3-209ENSMUST00000152501 743 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Lmx1bO88609 Gm26600-201ENSMUST00000181637 1256 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Lmx1bO88609 Gm6283-201ENSMUST00000182369 1000 ntBASIC12.55□□□□□ -0.4
Lmx1bO88609 Tcta-203ENSMUST00000195615 597 ntTSL 5 BASIC12.55□□□□□ -0.4
Lmx1bO88609 Tmco5b-201ENSMUST00000040856 1237 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Lmx1bO88609 Dpp3-201ENSMUST00000025851 2683 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Lmx1bO88609 Sugp2-214ENSMUST00000164403 4099 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Lmx1bO88609 Zbtb45-202ENSMUST00000172240 2722 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Lmx1bO88609 Lrrc8d-201ENSMUST00000060531 3923 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Lmx1bO88609 Sphk2-201ENSMUST00000072836 2968 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Lmx1bO88609 Gm9115-201ENSMUST00000120192 1348 ntBASIC12.55□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 20.9 ms