Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Rps2-ps5-201ENSMUST00000184266 849 ntBASIC13.03□□□□□ -0.32
Trim40Q3UWA4 Gm17971-201ENSMUST00000190239 806 ntBASIC13.03□□□□□ -0.32
Trim40Q3UWA4 Gm2272-201ENSMUST00000194903 582 ntBASIC13.03□□□□□ -0.32
Trim40Q3UWA4 4931406C07Rik-209ENSMUST00000217042 691 ntTSL 3 BASIC13.03□□□□□ -0.32
Trim40Q3UWA4 Mrps18a-201ENSMUST00000024763 884 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Trim40Q3UWA4 1700080E11Rik-201ENSMUST00000035180 883 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Trim40Q3UWA4 Tmem41b-201ENSMUST00000094097 3840 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Trim40Q3UWA4 Gm28386-201ENSMUST00000189147 1849 ntBASIC13.03□□□□□ -0.32
Trim40Q3UWA4 Dhtkd1-202ENSMUST00000095147 5480 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
Trim40Q3UWA4 Zfp853-202ENSMUST00000212355 2871 ntAPPRIS P5 TSL 5 BASIC13.03□□□□□ -0.32
Trim40Q3UWA4 G3bp2-209ENSMUST00000202258 1884 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
Trim40Q3UWA4 Gdf6-201ENSMUST00000057613 3532 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Trim40Q3UWA4 Matn3-201ENSMUST00000020899 3014 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Trim40Q3UWA4 Kcnj3-201ENSMUST00000067101 5215 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Trim40Q3UWA4 Atxn7l3b-201ENSMUST00000099276 3566 ntAPPRIS P1 BASIC13.03□□□□□ -0.32
Trim40Q3UWA4 Vrtn-202ENSMUST00000166772 3098 ntAPPRIS P1 TSL 3 BASIC13.03□□□□□ -0.32
Trim40Q3UWA4 Dolpp1-202ENSMUST00000113612 1958 ntTSL 3 BASIC13.03□□□□□ -0.32
Trim40Q3UWA4 Celf5-203ENSMUST00000120508 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Trim40Q3UWA4 Cfap69-201ENSMUST00000054865 4956 ntAPPRIS P2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Trim40Q3UWA4 Smyd1-203ENSMUST00000114188 2064 ntTSL 5 BASIC13.03□□□□□ -0.32
Trim40Q3UWA4 Ankfn1-201ENSMUST00000050983 2665 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Trim40Q3UWA4 Tmem38a-201ENSMUST00000034244 2124 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Trim40Q3UWA4 Osbpl1a-201ENSMUST00000074352 3956 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Trim40Q3UWA4 Pcdhgc3-201ENSMUST00000076807 4687 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Trim40Q3UWA4 Ttll9-202ENSMUST00000103155 1552 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
Trim40Q3UWA4 Ugt1a5-201ENSMUST00000097659 2203 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Trim40Q3UWA4 Gm9347-201ENSMUST00000211473 1607 ntBASIC13.02□□□□□ -0.32
Trim40Q3UWA4 Abi2-206ENSMUST00000188594 1658 ntTSL 5 BASIC13.02□□□□□ -0.32
Trim40Q3UWA4 Plcd3-201ENSMUST00000103077 3023 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Trim40Q3UWA4 Itgb4-203ENSMUST00000106458 5779 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.32
Trim40Q3UWA4 Rbpms2-202ENSMUST00000169003 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.32
Trim40Q3UWA4 Tgm6-201ENSMUST00000028888 3327 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Trim40Q3UWA4 Clcn6-201ENSMUST00000030879 3306 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.32
Trim40Q3UWA4 Eif5-201ENSMUST00000050993 1969 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.32
Trim40Q3UWA4 Llgl2-201ENSMUST00000103032 3551 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.32
Trim40Q3UWA4 Ftl2-ps-201ENSMUST00000118517 552 ntBASIC13.02□□□□□ -0.33
Trim40Q3UWA4 Frs3os-201ENSMUST00000136531 978 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Trim40Q3UWA4 Gm16026-204ENSMUST00000162652 683 ntBASIC13.02□□□□□ -0.33
Trim40Q3UWA4 Csrp3-202ENSMUST00000167786 899 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Trim40Q3UWA4 4930477E14Rik-201ENSMUST00000181412 621 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Trim40Q3UWA4 Klf13-204ENSMUST00000185175 487 ntTSL 2 BASIC13.02□□□□□ -0.33
Trim40Q3UWA4 Gm5712-201ENSMUST00000199748 1043 ntBASIC13.02□□□□□ -0.33
Trim40Q3UWA4 Gm15590-201ENSMUST00000078419 552 ntBASIC13.02□□□□□ -0.33
Trim40Q3UWA4 Lrif1-202ENSMUST00000098751 929 ntTSL 2 BASIC13.02□□□□□ -0.33
Trim40Q3UWA4 Cacna1g-202ENSMUST00000100561 8125 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
Trim40Q3UWA4 Klc2-204ENSMUST00000116563 3169 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Trim40Q3UWA4 Troap-201ENSMUST00000039665 2264 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Trim40Q3UWA4 Arhgap33-207ENSMUST00000208538 4372 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
Trim40Q3UWA4 Alx1-201ENSMUST00000040859 2493 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Trim40Q3UWA4 C5ar1-201ENSMUST00000050770 2481 ntAPPRIS P1 TSL 3 BASIC13.02□□□□□ -0.33
Trim40Q3UWA4 Zfp296-201ENSMUST00000108453 1530 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Trim40Q3UWA4 Retreg1-202ENSMUST00000110438 1526 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Trim40Q3UWA4 Grip1-202ENSMUST00000077871 3720 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Trim40Q3UWA4 Cacna2d1-202ENSMUST00000078272 7311 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Trim40Q3UWA4 2610028D06Rik-201ENSMUST00000215216 1713 ntBASIC13.02□□□□□ -0.33
Trim40Q3UWA4 Pdgfra-205ENSMUST00000201711 4088 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Trim40Q3UWA4 Stim1-201ENSMUST00000033289 4085 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Trim40Q3UWA4 Nfkb2-201ENSMUST00000073116 3054 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Trim40Q3UWA4 Fbxo15-204ENSMUST00000224467 1908 ntAPPRIS ALT2 BASIC13.01□□□□□ -0.33
Trim40Q3UWA4 Ptch2-201ENSMUST00000030443 4382 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trim40Q3UWA4 Tbc1d9b-201ENSMUST00000093138 4407 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trim40Q3UWA4 Otub2-201ENSMUST00000021620 2791 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trim40Q3UWA4 Pik3cd-201ENSMUST00000038859 4905 ntAPPRIS ALT1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trim40Q3UWA4 Phf21b-201ENSMUST00000016768 3377 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trim40Q3UWA4 Pus7-201ENSMUST00000119946 3407 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trim40Q3UWA4 Ighv4-1-201ENSMUST00000103464 414 ntAPPRIS P1 BASIC13.01□□□□□ -0.33
Trim40Q3UWA4 Commd5-202ENSMUST00000109793 920 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
Trim40Q3UWA4 Pgam1-ps2-201ENSMUST00000117129 765 ntBASIC13.01□□□□□ -0.33
Trim40Q3UWA4 Snhg15-203ENSMUST00000134527 675 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Trim40Q3UWA4 Egfl7-216ENSMUST00000174211 1163 ntAPPRIS P4 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trim40Q3UWA4 5430405H02Rik-203ENSMUST00000185402 904 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Trim40Q3UWA4 2010010A06Rik-202ENSMUST00000186356 694 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Trim40Q3UWA4 Dctn6-201ENSMUST00000033913 1249 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trim40Q3UWA4 Olfr30-201ENSMUST00000055204 1066 ntAPPRIS P1 BASIC13.01□□□□□ -0.33
Trim40Q3UWA4 Dmrt1-202ENSMUST00000087525 1130 ntTSL 5 BASIC13.01□□□□□ -0.33
Trim40Q3UWA4 Ptpn1-201ENSMUST00000029053 4213 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trim40Q3UWA4 Gm20482-201ENSMUST00000172746 1644 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Trim40Q3UWA4 Gm12404-201ENSMUST00000122839 1661 ntTSL 5 BASIC13.01□□□□□ -0.33
Trim40Q3UWA4 Rtn3-203ENSMUST00000088169 1709 ntTSL 5 BASIC13.01□□□□□ -0.33
Trim40Q3UWA4 Grk6-203ENSMUST00000224118 1997 ntAPPRIS ALT2 BASIC13.01□□□□□ -0.33
Trim40Q3UWA4 Gm45740-201ENSMUST00000212103 2003 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Trim40Q3UWA4 Got1-201ENSMUST00000026196 2058 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trim40Q3UWA4 Irf1-202ENSMUST00000108920 2137 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trim40Q3UWA4 Mllt6-201ENSMUST00000044730 7274 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trim40Q3UWA4 Ptp4a3-204ENSMUST00000167582 2640 ntTSL 5 BASIC13.01□□□□□ -0.33
Trim40Q3UWA4 Ap4b1-203ENSMUST00000106823 2741 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Trim40Q3UWA4 Pdcd6ip-202ENSMUST00000111861 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trim40Q3UWA4 Dpp6-204ENSMUST00000122171 4720 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trim40Q3UWA4 Actn4-201ENSMUST00000068045 3877 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Trim40Q3UWA4 Sfpq-201ENSMUST00000030623 3465 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Trim40Q3UWA4 AC117194.1-201ENSMUST00000224847 3002 ntBASIC13□□□□□ -0.33
Trim40Q3UWA4 Tsku-206ENSMUST00000179780 2404 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Trim40Q3UWA4 Zyx-201ENSMUST00000070635 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Trim40Q3UWA4 Calcr-203ENSMUST00000168592 2064 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
Trim40Q3UWA4 Top1mt-201ENSMUST00000000958 1903 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Trim40Q3UWA4 6430710C18Rik-203ENSMUST00000136807 1540 ntTSL 1 (best) BASIC13□□□□□ -0.33
Trim40Q3UWA4 Alkbh3os1-201ENSMUST00000028621 1549 ntTSL 5 BASIC13□□□□□ -0.33
Trim40Q3UWA4 Ckmt1-202ENSMUST00000078222 1518 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Trim40Q3UWA4 Gm10044-203ENSMUST00000166813 1471 ntTSL 1 (best) BASIC13□□□□□ -0.33
Trim40Q3UWA4 Lrrc8a-202ENSMUST00000113654 4194 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 60.2 ms