Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Mtif3-204ENSMUST00000110566 1134 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Rnf40Q3U319 Gm29013-201ENSMUST00000187431 237 ntBASIC14.45□□□□□ -0.1
Rnf40Q3U319 Gm29518-201ENSMUST00000190858 372 ntBASIC14.45□□□□□ -0.1
Rnf40Q3U319 Gm10459-201ENSMUST00000202708 1155 ntBASIC14.45□□□□□ -0.1
Rnf40Q3U319 Grtp1-204ENSMUST00000209691 1030 ntTSL 5 BASIC14.45□□□□□ -0.1
Rnf40Q3U319 Brinp1-201ENSMUST00000030036 3212 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Rnf40Q3U319 Ank1-201ENSMUST00000033947 1030 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Rnf40Q3U319 Olfr1437-201ENSMUST00000052558 1177 ntAPPRIS P1 BASIC14.45□□□□□ -0.1
Rnf40Q3U319 Gchfr-201ENSMUST00000057454 645 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Rnf40Q3U319 C1qbp-201ENSMUST00000078528 1175 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Rnf40Q3U319 Hist1h3c-201ENSMUST00000091752 630 ntAPPRIS P1 BASIC14.45□□□□□ -0.1
Rnf40Q3U319 Lrpprc-201ENSMUST00000112308 4393 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Rnf40Q3U319 Slc25a46-201ENSMUST00000060396 4371 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Rnf40Q3U319 Tbkbp1-204ENSMUST00000107615 3333 ntAPPRIS P2 TSL 5 BASIC14.45□□□□□ -0.1
Rnf40Q3U319 Klc2-202ENSMUST00000113727 2874 ntTSL 5 BASIC14.45□□□□□ -0.1
Rnf40Q3U319 Nmral1-204ENSMUST00000120056 2440 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Rnf40Q3U319 Efhc1-201ENSMUST00000038447 2146 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Rnf40Q3U319 Prkce-202ENSMUST00000097275 6254 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Rnf40Q3U319 Gm26841-201ENSMUST00000180725 1787 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Rnf40Q3U319 Il13ra1-201ENSMUST00000033418 3712 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Rnf40Q3U319 Nrip2-202ENSMUST00000120405 1468 ntTSL 2 BASIC14.44□□□□□ -0.1
Rnf40Q3U319 Parp2-201ENSMUST00000036126 1894 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Rnf40Q3U319 Hgs-202ENSMUST00000106203 2901 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
Rnf40Q3U319 Ccdc22-201ENSMUST00000033483 2353 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Rnf40Q3U319 Inpp5e-205ENSMUST00000145701 4147 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
Rnf40Q3U319 Gamt-202ENSMUST00000105363 988 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Rnf40Q3U319 Gm14776-201ENSMUST00000121029 887 ntBASIC14.44□□□□□ -0.1
Rnf40Q3U319 Gm15952-202ENSMUST00000144542 556 ntTSL 3 BASIC14.44□□□□□ -0.1
Rnf40Q3U319 Tmprss5-204ENSMUST00000167095 1146 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
Rnf40Q3U319 Gm5253-201ENSMUST00000187104 1025 ntBASIC14.44□□□□□ -0.1
Rnf40Q3U319 Gm9682-201ENSMUST00000197505 556 ntBASIC14.44□□□□□ -0.1
Rnf40Q3U319 AC079680.1-201ENSMUST00000218730 649 ntTSL 5 BASIC14.44□□□□□ -0.1
Rnf40Q3U319 Inmt-201ENSMUST00000003569 1077 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Rnf40Q3U319 Gpr19-204ENSMUST00000116515 2075 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Rnf40Q3U319 Begain-204ENSMUST00000209829 3272 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
Rnf40Q3U319 Cpeb1-201ENSMUST00000098331 3111 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
Rnf40Q3U319 Car7-201ENSMUST00000056051 1538 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Rnf40Q3U319 Gm20708-201ENSMUST00000132298 1780 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
Rnf40Q3U319 Ppp1r8-201ENSMUST00000030702 2037 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
Rnf40Q3U319 Srgn-204ENSMUST00000160987 1727 ntAPPRIS P1 TSL 3 BASIC14.44□□□□□ -0.1
Rnf40Q3U319 Gm43423-201ENSMUST00000198390 2094 ntBASIC14.43□□□□□ -0.1
Rnf40Q3U319 Nrf1-211ENSMUST00000115212 3584 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Rnf40Q3U319 Mau2-202ENSMUST00000168013 5323 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
Rnf40Q3U319 Caskin2-201ENSMUST00000041684 4929 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Rnf40Q3U319 Net1-201ENSMUST00000091853 2680 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
Rnf40Q3U319 Blzf1-203ENSMUST00000120447 2430 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Rnf40Q3U319 Psrc1-202ENSMUST00000102629 1687 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Rnf40Q3U319 Adsl-206ENSMUST00000168756 1439 ntTSL 5 BASIC14.43□□□□□ -0.1
Rnf40Q3U319 Gm8258-201ENSMUST00000055593 1449 ntBASIC14.43□□□□□ -0.1
Rnf40Q3U319 Cacna2d1-202ENSMUST00000078272 7311 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Rnf40Q3U319 Trnt1-201ENSMUST00000057578 2283 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Rnf40Q3U319 Hacd2-201ENSMUST00000061156 3603 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Rnf40Q3U319 Pik3r6-202ENSMUST00000102613 3225 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
Rnf40Q3U319 Oprl1-203ENSMUST00000108766 1241 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Rnf40Q3U319 Adal-203ENSMUST00000110662 1231 ntTSL 5 BASIC14.43□□□□□ -0.1
Rnf40Q3U319 Gm11077-201ENSMUST00000111844 84 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
Rnf40Q3U319 Gm20479-201ENSMUST00000126587 556 ntAPPRIS P1 TSL 3 BASIC14.43□□□□□ -0.1
Rnf40Q3U319 Nr6a1os-201ENSMUST00000129089 645 ntTSL 2 BASIC14.43□□□□□ -0.1
Rnf40Q3U319 Nmi-205ENSMUST00000145481 1162 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Rnf40Q3U319 Rac3-201ENSMUST00000018156 1076 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Rnf40Q3U319 Gm6944-201ENSMUST00000182449 1006 ntBASIC14.43□□□□□ -0.1
Rnf40Q3U319 Gm28793-201ENSMUST00000190845 413 ntTSL 5 BASIC14.43□□□□□ -0.1
Rnf40Q3U319 Gm20383-201ENSMUST00000203799 1227 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Rnf40Q3U319 Gm35638-201ENSMUST00000220724 652 ntBASIC14.43□□□□□ -0.1
Rnf40Q3U319 Atp5o-201ENSMUST00000023677 838 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Rnf40Q3U319 Neurl2-201ENSMUST00000042775 1014 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Rnf40Q3U319 Methig1-201ENSMUST00000075675 1029 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Rnf40Q3U319 Hp1bp3-201ENSMUST00000030541 3311 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
Rnf40Q3U319 Rab11fip1-202ENSMUST00000054212 7965 ntAPPRIS P3 TSL 5 BASIC14.43□□□□□ -0.1
Rnf40Q3U319 S1pr3-201ENSMUST00000087978 4463 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Rnf40Q3U319 Stk25-201ENSMUST00000027498 4249 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Rnf40Q3U319 Vmn1r65-201ENSMUST00000086338 2682 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Rnf40Q3U319 H2-T23-201ENSMUST00000102678 1472 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Rnf40Q3U319 Ttc5-201ENSMUST00000006451 1842 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Rnf40Q3U319 Fbxl12-203ENSMUST00000131128 4182 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Rnf40Q3U319 Miga2-208ENSMUST00000140075 2196 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Rnf40Q3U319 Nrp2-203ENSMUST00000075144 6723 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Rnf40Q3U319 Micu1-202ENSMUST00000092508 2294 ntAPPRIS ALT1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Rnf40Q3U319 Gm13814-201ENSMUST00000141341 3077 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Rnf40Q3U319 Ntm-203ENSMUST00000115237 2039 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Rnf40Q3U319 Gabrg3-202ENSMUST00000068911 9767 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Rnf40Q3U319 Tssk4-202ENSMUST00000164809 1686 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Rnf40Q3U319 Hoxb13-201ENSMUST00000062709 2206 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Rnf40Q3U319 Ddx19b-202ENSMUST00000065784 3104 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Rnf40Q3U319 Gm26551-201ENSMUST00000181262 2432 ntTSL 5 BASIC14.42□□□□□ -0.1
Rnf40Q3U319 Elf1-201ENSMUST00000040131 4235 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Rnf40Q3U319 Acsf3-203ENSMUST00000212790 2171 ntAPPRIS P2 TSL 5 BASIC14.42□□□□□ -0.1
Rnf40Q3U319 Zfp707-202ENSMUST00000109967 1703 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
Rnf40Q3U319 Dbndd2-204ENSMUST00000109350 1055 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
Rnf40Q3U319 Gm5577-203ENSMUST00000153372 815 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Rnf40Q3U319 Vmn1r-ps144-201ENSMUST00000177291 939 ntBASIC14.42□□□□□ -0.1
Rnf40Q3U319 1700003C15Rik-202ENSMUST00000188236 710 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Rnf40Q3U319 Gm10046-201ENSMUST00000208208 632 ntTSL 2 BASIC14.42□□□□□ -0.1
Rnf40Q3U319 AC156832.2-201ENSMUST00000216217 1295 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Rnf40Q3U319 AC153912.1-201ENSMUST00000217011 724 ntAPPRIS P1 TSL 3 BASIC14.42□□□□□ -0.1
Rnf40Q3U319 Gm9182-201ENSMUST00000217829 639 ntBASIC14.42□□□□□ -0.1
Rnf40Q3U319 Gm36377-201ENSMUST00000220833 757 ntTSL 2 BASIC14.42□□□□□ -0.1
Rnf40Q3U319 Fam151b-201ENSMUST00000040106 1152 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Rnf40Q3U319 Zfp524-201ENSMUST00000086349 1142 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Rnf40Q3U319 Hnrnph2-202ENSMUST00000059297 2364 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Retrieved 100 of 76,532 protein–RNA pairs in 40.3 ms