Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Megf9-202ENSMUST00000107359 7924 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Shmt1P50431 Samd4-203ENSMUST00000125113 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Shmt1P50431 Amdhd2-201ENSMUST00000040735 1496 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Shmt1P50431 Galt-201ENSMUST00000084695 1595 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Shmt1P50431 Kif11-201ENSMUST00000012587 4819 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Shmt1P50431 Gm10710-201ENSMUST00000047876 3971 ntBASIC14.67□□□□□ -0.06
Shmt1P50431 Mettl11b-201ENSMUST00000159679 1790 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Shmt1P50431 Mtcl1-211ENSMUST00000177034 5441 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
Shmt1P50431 E230013L22Rik-201ENSMUST00000180408 1856 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Shmt1P50431 Cdk18-201ENSMUST00000027697 4355 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Shmt1P50431 Rgs3-201ENSMUST00000065870 4698 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Shmt1P50431 Urm1-201ENSMUST00000091142 2196 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Shmt1P50431 Hmga2-201ENSMUST00000072777 3710 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Shmt1P50431 Rab18-201ENSMUST00000097680 2257 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Shmt1P50431 Atrip-201ENSMUST00000045011 2572 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Shmt1P50431 Anks1b-205ENSMUST00000179694 2663 ntTSL 5 BASIC14.67□□□□□ -0.06
Shmt1P50431 Lurap1l-201ENSMUST00000055922 3066 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Shmt1P50431 2410018L13Rik-205ENSMUST00000149246 3370 ntTSL 2 BASIC14.67□□□□□ -0.06
Shmt1P50431 Hnrnpul1-201ENSMUST00000043765 3354 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Shmt1P50431 Dhrs3-207ENSMUST00000171001 1349 ntTSL 5 BASIC14.66□□□□□ -0.06
Shmt1P50431 Wdtc1-202ENSMUST00000105906 4057 ntTSL 5 BASIC14.66□□□□□ -0.06
Shmt1P50431 Fam151a-201ENSMUST00000047620 1923 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Shmt1P50431 Psen2-201ENSMUST00000010753 2004 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Shmt1P50431 Mindy3-201ENSMUST00000028105 2344 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Shmt1P50431 Myo9b-203ENSMUST00000170242 7297 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
Shmt1P50431 Pim1-201ENSMUST00000024811 2638 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Shmt1P50431 Tmem164-202ENSMUST00000101198 4443 ntTSL 3 BASIC14.66□□□□□ -0.06
Shmt1P50431 Arid3a-203ENSMUST00000105377 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Shmt1P50431 Ebf3-208ENSMUST00000210774 2994 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Shmt1P50431 Rasa4-202ENSMUST00000100570 2660 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Shmt1P50431 Mcidas-201ENSMUST00000092089 2377 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Shmt1P50431 Stip1-201ENSMUST00000025918 2173 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Shmt1P50431 Higd1a-205ENSMUST00000215007 1980 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Shmt1P50431 Tmem9b-202ENSMUST00000118571 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Shmt1P50431 Tmem94-201ENSMUST00000093912 5329 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Shmt1P50431 Oxtr-201ENSMUST00000053306 4704 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Shmt1P50431 AC154527.2-201ENSMUST00000225256 1466 ntBASIC14.66□□□□□ -0.06
Shmt1P50431 Fam167a-201ENSMUST00000121288 4231 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Shmt1P50431 Mir698-201ENSMUST00000102164 109 ntBASIC14.66□□□□□ -0.06
Shmt1P50431 Alkbh2-202ENSMUST00000112279 899 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Shmt1P50431 Cd99l2-204ENSMUST00000114587 973 ntAPPRIS ALT2 TSL 3 BASIC14.66□□□□□ -0.06
Shmt1P50431 Rapgef3os2-201ENSMUST00000124374 920 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Shmt1P50431 Spag7-201ENSMUST00000018431 1159 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Shmt1P50431 Gm45668-201ENSMUST00000211271 493 ntBASIC14.66□□□□□ -0.06
Shmt1P50431 Gm18624-201ENSMUST00000220966 658 ntBASIC14.66□□□□□ -0.06
Shmt1P50431 Pemt-201ENSMUST00000000310 953 ntAPPRIS P1 TSL 3 BASIC14.66□□□□□ -0.06
Shmt1P50431 Gm6180-201ENSMUST00000065243 498 ntBASIC14.66□□□□□ -0.06
Shmt1P50431 Gm996-203ENSMUST00000188161 2925 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
Shmt1P50431 Hcrtr1-202ENSMUST00000119423 2439 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
Shmt1P50431 Spg20-204ENSMUST00000118118 3981 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
Shmt1P50431 Espn-220ENSMUST00000207676 4618 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
Shmt1P50431 Rps6ka5-201ENSMUST00000043599 4406 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Shmt1P50431 Atpaf2-201ENSMUST00000108721 1813 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Shmt1P50431 Etfrf1-205ENSMUST00000111724 1618 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Shmt1P50431 Oasl1-202ENSMUST00000112143 2181 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Shmt1P50431 Myo1c-204ENSMUST00000108431 4718 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Shmt1P50431 Lifr-201ENSMUST00000067190 4143 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
Shmt1P50431 Nrcam-202ENSMUST00000110748 6275 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
Shmt1P50431 Kctd14-206ENSMUST00000206658 2339 ntAPPRIS P3 TSL 3 BASIC14.65□□□□□ -0.06
Shmt1P50431 Prrg4-201ENSMUST00000028593 2872 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Shmt1P50431 Pcdha11-202ENSMUST00000115657 5360 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
Shmt1P50431 Cyp2ab1-205ENSMUST00000182741 1497 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
Shmt1P50431 B3gntl1-201ENSMUST00000062654 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
Shmt1P50431 Nr2f1-205ENSMUST00000150498 2588 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Shmt1P50431 Nxpe3-201ENSMUST00000099705 6430 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Shmt1P50431 Gm15557-201ENSMUST00000109629 1380 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
Shmt1P50431 Gm8337-201ENSMUST00000187358 1938 ntBASIC14.65□□□□□ -0.06
Shmt1P50431 Yap1-202ENSMUST00000086580 4115 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
Shmt1P50431 Ncln-202ENSMUST00000118498 2841 ntAPPRIS ALT1 TSL 5 BASIC14.65□□□□□ -0.06
Shmt1P50431 Gm16000-201ENSMUST00000146657 447 ntTSL 2 BASIC14.65□□□□□ -0.06
Shmt1P50431 Fbxw4-209ENSMUST00000162433 789 ntTSL 3 BASIC14.65□□□□□ -0.06
Shmt1P50431 Gm24420-201ENSMUST00000176676 59 ntBASIC14.65□□□□□ -0.06
Shmt1P50431 Oaz1-203ENSMUST00000179172 744 ntTSL 5 BASIC14.65□□□□□ -0.06
Shmt1P50431 4930478K11Rik-201ENSMUST00000181875 715 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Shmt1P50431 Gm5354-201ENSMUST00000182417 973 ntBASIC14.65□□□□□ -0.06
Shmt1P50431 Gm2445-201ENSMUST00000182798 989 ntBASIC14.65□□□□□ -0.06
Shmt1P50431 Ip6k2-210ENSMUST00000194875 748 ntTSL 2 BASIC14.65□□□□□ -0.06
Shmt1P50431 Lcmt1-204ENSMUST00000206574 1286 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
Shmt1P50431 AC238811.3-201ENSMUST00000225422 709 ntBASIC14.65□□□□□ -0.06
Shmt1P50431 Gm5519-201ENSMUST00000042061 513 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Shmt1P50431 Oaz1-ps-201ENSMUST00000052440 681 ntBASIC14.65□□□□□ -0.06
Shmt1P50431 Cfp-201ENSMUST00000001156 1636 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Shmt1P50431 Sphk2-201ENSMUST00000072836 2968 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Shmt1P50431 Cnmd-201ENSMUST00000022603 1433 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
Shmt1P50431 Prkcsh-205ENSMUST00000216344 2228 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
Shmt1P50431 Usp33-201ENSMUST00000026507 4153 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
Shmt1P50431 Gm14455-201ENSMUST00000138288 2146 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Shmt1P50431 Fam169b-202ENSMUST00000125685 2821 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
Shmt1P50431 Six4-201ENSMUST00000043208 6402 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.07
Shmt1P50431 Nfxl1-202ENSMUST00000087216 3712 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
Shmt1P50431 Fbxo21-206ENSMUST00000202447 3959 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
Shmt1P50431 Mff-201ENSMUST00000073025 1706 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Shmt1P50431 Mybl1-201ENSMUST00000088658 4980 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Shmt1P50431 Nomo1-201ENSMUST00000033121 4257 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Shmt1P50431 Togaram2-205ENSMUST00000153445 3302 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
Shmt1P50431 Ghr-201ENSMUST00000069451 4175 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Shmt1P50431 Gm11555-202ENSMUST00000104929 638 ntAPPRIS P1 BASIC14.64□□□□□ -0.07
Shmt1P50431 Fam53b-205ENSMUST00000106166 1270 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Shmt1P50431 Gm43094-201ENSMUST00000196549 921 ntBASIC14.64□□□□□ -0.07
Shmt1P50431 Mpv17-207ENSMUST00000201491 923 ntTSL 2 BASIC14.64□□□□□ -0.07
Retrieved 100 of 76,532 protein–RNA pairs in 27.3 ms