Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Mfrp-205ENSMUST00000206308 4037 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
Chmp6P0C0A3 Cep295nl-201ENSMUST00000103024 1944 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Chmp6P0C0A3 Trim59-201ENSMUST00000107802 2939 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Chmp6P0C0A3 Prpf3-201ENSMUST00000015892 2933 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Chmp6P0C0A3 Etnk2-201ENSMUST00000129213 2074 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
Chmp6P0C0A3 Elovl1-207ENSMUST00000167636 1340 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Chmp6P0C0A3 Rundc1-201ENSMUST00000040561 3223 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Chmp6P0C0A3 Eif4g1-205ENSMUST00000115461 5507 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
Chmp6P0C0A3 BC006965-201ENSMUST00000124028 1952 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Chmp6P0C0A3 Ank1-208ENSMUST00000121075 1740 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Chmp6P0C0A3 Rapsn-203ENSMUST00000111446 1458 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Chmp6P0C0A3 Diaph1-204ENSMUST00000115631 5741 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
Chmp6P0C0A3 Camk2d-202ENSMUST00000066466 4075 ntAPPRIS ALT1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Chmp6P0C0A3 Tom1-202ENSMUST00000165630 2267 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Chmp6P0C0A3 Prrxl1-203ENSMUST00000187377 1629 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Chmp6P0C0A3 Sbno2-209ENSMUST00000219260 4850 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
Chmp6P0C0A3 Tnip2-201ENSMUST00000030991 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Chmp6P0C0A3 Rplp0-201ENSMUST00000086519 1358 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Chmp6P0C0A3 Dlgap3-201ENSMUST00000046659 3884 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Chmp6P0C0A3 Nr2c2-201ENSMUST00000113460 7647 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
Chmp6P0C0A3 Pdgfrl-201ENSMUST00000034004 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Chmp6P0C0A3 Arfrp1-202ENSMUST00000108808 1133 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Chmp6P0C0A3 Lcn6-202ENSMUST00000114197 635 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Chmp6P0C0A3 Pam16-201ENSMUST00000014445 596 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Chmp6P0C0A3 Gm16137-201ENSMUST00000161571 664 ntTSL 5 BASIC15.14■□□□□ 0.01
Chmp6P0C0A3 Lsamp-207ENSMUST00000189229 637 ntTSL 3 BASIC15.14■□□□□ 0.01
Chmp6P0C0A3 Lsamp-210ENSMUST00000191610 1297 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Chmp6P0C0A3 Ins2-209ENSMUST00000210288 918 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
Chmp6P0C0A3 Gnao1-203ENSMUST00000125716 3462 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Chmp6P0C0A3 Tmem220-201ENSMUST00000061786 1597 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Chmp6P0C0A3 Cog3-201ENSMUST00000049168 4222 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Chmp6P0C0A3 Gm12503-201ENSMUST00000146576 3127 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Chmp6P0C0A3 Galnt6-203ENSMUST00000161514 2746 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Chmp6P0C0A3 Krt71-201ENSMUST00000023710 2185 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Chmp6P0C0A3 Gng4-201ENSMUST00000021734 3179 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Chmp6P0C0A3 Myh14-203ENSMUST00000107900 6400 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
Chmp6P0C0A3 Rad52-201ENSMUST00000032269 1617 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
Chmp6P0C0A3 Gm43056-201ENSMUST00000197865 2791 ntBASIC15.13■□□□□ 0.01
Chmp6P0C0A3 Slc39a3-202ENSMUST00000117276 3796 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Chmp6P0C0A3 Nat6-201ENSMUST00000093785 2053 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Chmp6P0C0A3 Kcnh2-201ENSMUST00000036092 4221 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Chmp6P0C0A3 Hdac7-202ENSMUST00000088402 4223 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
Chmp6P0C0A3 Myh3-201ENSMUST00000007301 5992 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
Chmp6P0C0A3 Hif3a-202ENSMUST00000108492 6402 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Chmp6P0C0A3 Noct-203ENSMUST00000167780 2992 ntAPPRIS P2 TSL 5 BASIC15.13■□□□□ 0.01
Chmp6P0C0A3 Olfr1411-202ENSMUST00000190844 1821 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
Chmp6P0C0A3 Ints3-202ENSMUST00000071488 4038 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Chmp6P0C0A3 Cmpk1-201ENSMUST00000030491 3170 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Chmp6P0C0A3 Supt6-201ENSMUST00000002121 6488 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Chmp6P0C0A3 Krtap1-3-201ENSMUST00000104930 879 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
Chmp6P0C0A3 Styxl1-204ENSMUST00000111163 1276 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Chmp6P0C0A3 Gm15653-201ENSMUST00000119247 907 ntBASIC15.13■□□□□ 0.01
Chmp6P0C0A3 Ncr3-ps-201ENSMUST00000134687 525 ntBASIC15.13■□□□□ 0.01
Chmp6P0C0A3 Gm37117-201ENSMUST00000194238 589 ntTSL 5 BASIC15.13■□□□□ 0.01
Chmp6P0C0A3 Gm6916-202ENSMUST00000205523 195 ntBASIC15.13■□□□□ 0.01
Chmp6P0C0A3 Ino80e-214ENSMUST00000206349 883 ntTSL 2 BASIC15.13■□□□□ 0.01
Chmp6P0C0A3 Pim2-204ENSMUST00000223553 1113 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Chmp6P0C0A3 Syce1l-201ENSMUST00000034219 896 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Chmp6P0C0A3 Hes5-201ENSMUST00000049621 1273 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Chmp6P0C0A3 Zswim7-201ENSMUST00000072916 732 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Chmp6P0C0A3 Mdga1-201ENSMUST00000073556 7566 ntAPPRIS P2 TSL 5 BASIC15.13■□□□□ 0.01
Chmp6P0C0A3 Arf2-201ENSMUST00000057921 2242 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Chmp6P0C0A3 P2rx3-202ENSMUST00000111613 1764 ntAPPRIS ALT1 TSL 5 BASIC15.13■□□□□ 0.01
Chmp6P0C0A3 Slc8b1-203ENSMUST00000111889 1624 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
Chmp6P0C0A3 Tbx3-201ENSMUST00000018748 4856 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Chmp6P0C0A3 Frmpd4-204ENSMUST00000112149 8456 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
Chmp6P0C0A3 Sipa1-202ENSMUST00000080824 3837 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Chmp6P0C0A3 Zfp236-201ENSMUST00000171071 9626 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Chmp6P0C0A3 Slc5a2-202ENSMUST00000118169 2277 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Chmp6P0C0A3 Kcnma1-214ENSMUST00000190044 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Chmp6P0C0A3 Gm8334-201ENSMUST00000112755 1662 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
Chmp6P0C0A3 Strip2-201ENSMUST00000046028 5370 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Chmp6P0C0A3 Ubiad1-201ENSMUST00000051633 2992 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Chmp6P0C0A3 Bid-201ENSMUST00000004560 2189 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Chmp6P0C0A3 Cdh7-206ENSMUST00000137092 2681 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Chmp6P0C0A3 Rabggta-202ENSMUST00000163889 1886 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Chmp6P0C0A3 Fam57b-202ENSMUST00000098032 1894 ntTSL 5 BASIC15.12■□□□□ 0.01
Chmp6P0C0A3 B4galnt1-201ENSMUST00000006914 2395 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Chmp6P0C0A3 Kcnk13-202ENSMUST00000160413 3061 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Chmp6P0C0A3 Ntn4-201ENSMUST00000020204 3646 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Chmp6P0C0A3 Gm15957-201ENSMUST00000118893 974 ntBASIC15.12■□□□□ 0.01
Chmp6P0C0A3 Gm14057-201ENSMUST00000120631 482 ntBASIC15.12■□□□□ 0.01
Chmp6P0C0A3 Six3os1-205ENSMUST00000175913 791 ntTSL 3 BASIC15.12■□□□□ 0.01
Chmp6P0C0A3 Gm42787-201ENSMUST00000200879 1164 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Chmp6P0C0A3 Gm39228-201ENSMUST00000212456 301 ntTSL 5 BASIC15.12■□□□□ 0.01
Chmp6P0C0A3 Gm10747-201ENSMUST00000217799 1014 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Chmp6P0C0A3 Cox6b1-201ENSMUST00000075738 618 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Chmp6P0C0A3 Obp2a-201ENSMUST00000077667 744 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Chmp6P0C0A3 Rec114-201ENSMUST00000098674 883 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Chmp6P0C0A3 Nfasc-207ENSMUST00000187861 4927 ntTSL 5 BASIC15.12■□□□□ 0.01
Chmp6P0C0A3 Sohlh2-201ENSMUST00000029369 2364 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Chmp6P0C0A3 Gm45667-201ENSMUST00000210380 1316 ntBASIC15.12■□□□□ 0.01
Chmp6P0C0A3 Utp4-201ENSMUST00000047629 2232 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Chmp6P0C0A3 Wnk1-203ENSMUST00000088644 11330 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
Chmp6P0C0A3 Apbb1-215ENSMUST00000190369 1882 ntTSL 5 BASIC15.12■□□□□ 0.01
Chmp6P0C0A3 Gm37411-201ENSMUST00000194180 2282 ntBASIC15.12■□□□□ 0.01
Chmp6P0C0A3 Psmd8-202ENSMUST00000182328 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Chmp6P0C0A3 Tle3-215ENSMUST00000162583 4299 ntAPPRIS ALT1 TSL 5 BASIC15.11■□□□□ 0.01
Chmp6P0C0A3 AC124751.1-201ENSMUST00000222716 1408 ntBASIC15.11■□□□□ 0.01
Chmp6P0C0A3 Rnpepl1-201ENSMUST00000027487 3337 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 30 ms