Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Cit-203ENSMUST00000112008 6087 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
Trim3Q9R1R2 Hspa8-202ENSMUST00000117557 2019 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Trim3Q9R1R2 Efemp1-201ENSMUST00000020759 2037 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Trim3Q9R1R2 Noct-201ENSMUST00000023849 3059 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Trim3Q9R1R2 Pde12-201ENSMUST00000052932 7725 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Trim3Q9R1R2 Unc119b-201ENSMUST00000060798 3659 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Trim3Q9R1R2 Reep5-201ENSMUST00000006027 2894 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Trim3Q9R1R2 4921504A21Rik-201ENSMUST00000180594 2156 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Trim3Q9R1R2 Cnih4-203ENSMUST00000111059 3127 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Trim3Q9R1R2 Myo19-202ENSMUST00000093969 4091 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
Trim3Q9R1R2 Prkacb-202ENSMUST00000102515 4347 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Trim3Q9R1R2 Tbkbp1-201ENSMUST00000066078 3338 ntAPPRIS ALT2 TSL 5 BASIC13.11□□□□□ -0.31
Trim3Q9R1R2 Park7-205ENSMUST00000105676 582 ntTSL 5 BASIC13.11□□□□□ -0.31
Trim3Q9R1R2 Ube2v2-202ENSMUST00000115776 1236 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Trim3Q9R1R2 Gm5566-201ENSMUST00000116118 459 ntBASIC13.11□□□□□ -0.31
Trim3Q9R1R2 Nr2f1-202ENSMUST00000125176 841 ntTSL 5 BASIC13.11□□□□□ -0.31
Trim3Q9R1R2 Gm11899-201ENSMUST00000142373 745 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Trim3Q9R1R2 Noct-203ENSMUST00000167780 2992 ntAPPRIS P2 TSL 5 BASIC13.11□□□□□ -0.31
Trim3Q9R1R2 Ssty1-201ENSMUST00000180056 699 ntAPPRIS P1 BASIC13.11□□□□□ -0.31
Trim3Q9R1R2 Gm27622-201ENSMUST00000183779 60 ntBASIC13.11□□□□□ -0.31
Trim3Q9R1R2 Gm29310-201ENSMUST00000185468 696 ntBASIC13.11□□□□□ -0.31
Trim3Q9R1R2 Gm21825-201ENSMUST00000185728 696 ntBASIC13.11□□□□□ -0.31
Trim3Q9R1R2 Gm29109-201ENSMUST00000185895 696 ntBASIC13.11□□□□□ -0.31
Trim3Q9R1R2 Gm21896-201ENSMUST00000186520 696 ntBASIC13.11□□□□□ -0.31
Trim3Q9R1R2 Gm21873-201ENSMUST00000186728 696 ntBASIC13.11□□□□□ -0.31
Trim3Q9R1R2 Gm21794-201ENSMUST00000187056 696 ntBASIC13.11□□□□□ -0.31
Trim3Q9R1R2 Gm21880-201ENSMUST00000187275 696 ntBASIC13.11□□□□□ -0.31
Trim3Q9R1R2 Gm21826-201ENSMUST00000187451 696 ntBASIC13.11□□□□□ -0.31
Trim3Q9R1R2 Gm21198-201ENSMUST00000188393 696 ntBASIC13.11□□□□□ -0.31
Trim3Q9R1R2 Gm21749-201ENSMUST00000189343 696 ntBASIC13.11□□□□□ -0.31
Trim3Q9R1R2 Gm21901-201ENSMUST00000189568 696 ntBASIC13.11□□□□□ -0.31
Trim3Q9R1R2 Gm29424-201ENSMUST00000189716 696 ntBASIC13.11□□□□□ -0.31
Trim3Q9R1R2 Gm28599-201ENSMUST00000189838 694 ntBASIC13.11□□□□□ -0.31
Trim3Q9R1R2 Gm21867-201ENSMUST00000189917 696 ntBASIC13.11□□□□□ -0.31
Trim3Q9R1R2 Gm29269-201ENSMUST00000190087 696 ntBASIC13.11□□□□□ -0.31
Trim3Q9R1R2 Gm21722-201ENSMUST00000190153 696 ntBASIC13.11□□□□□ -0.31
Trim3Q9R1R2 Gm28423-201ENSMUST00000190701 696 ntBASIC13.11□□□□□ -0.31
Trim3Q9R1R2 Gm21899-201ENSMUST00000190745 696 ntBASIC13.11□□□□□ -0.31
Trim3Q9R1R2 Gm21910-201ENSMUST00000191163 696 ntBASIC13.11□□□□□ -0.31
Trim3Q9R1R2 Gm21849-201ENSMUST00000191571 696 ntBASIC13.11□□□□□ -0.31
Trim3Q9R1R2 Gm28678-201ENSMUST00000191593 696 ntBASIC13.11□□□□□ -0.31
Trim3Q9R1R2 Gm20910-201ENSMUST00000193268 696 ntBASIC13.11□□□□□ -0.31
Trim3Q9R1R2 Gm21871-201ENSMUST00000194621 696 ntBASIC13.11□□□□□ -0.31
Trim3Q9R1R2 Polr2j-201ENSMUST00000041366 646 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Trim3Q9R1R2 Serpina16-201ENSMUST00000095451 1257 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
Trim3Q9R1R2 Adarb1-201ENSMUST00000020496 6549 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Trim3Q9R1R2 Ppt2-210ENSMUST00000171376 1750 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Trim3Q9R1R2 Apln-201ENSMUST00000039026 3149 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Trim3Q9R1R2 Ntn4-201ENSMUST00000020204 3646 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Trim3Q9R1R2 Olfr607-202ENSMUST00000214347 5706 ntAPPRIS P5 TSL 5 BASIC13.11□□□□□ -0.31
Trim3Q9R1R2 Dnmt3b-204ENSMUST00000088976 4130 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Trim3Q9R1R2 4632404H12Rik-201ENSMUST00000038450 2791 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Trim3Q9R1R2 Cacnb4-206ENSMUST00000178799 7981 ntTSL 5 BASIC13.11□□□□□ -0.31
Trim3Q9R1R2 Syt13-201ENSMUST00000028648 3761 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Trim3Q9R1R2 4930425O10Rik-201ENSMUST00000197761 1418 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Trim3Q9R1R2 Rbfox2-209ENSMUST00000228087 1694 ntAPPRIS ALT2 BASIC13.11□□□□□ -0.31
Trim3Q9R1R2 Caprin1-201ENSMUST00000028607 6169 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Trim3Q9R1R2 Bdp1-201ENSMUST00000038104 9921 ntAPPRIS P2 TSL 5 BASIC13.11□□□□□ -0.31
Trim3Q9R1R2 Ptpn11-202ENSMUST00000100770 5599 ntAPPRIS ALT1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Trim3Q9R1R2 Ate1-201ENSMUST00000033139 4735 ntAPPRIS P4 TSL 1 (best) BASIC13.11□□□□□ -0.31
Trim3Q9R1R2 Tspan31-201ENSMUST00000060991 1556 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Trim3Q9R1R2 G3bp2-203ENSMUST00000167918 4232 ntAPPRIS ALT1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Trim3Q9R1R2 Rfc3-201ENSMUST00000038131 1317 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Trim3Q9R1R2 Clcnkb-202ENSMUST00000105788 2490 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Trim3Q9R1R2 Clcc1-201ENSMUST00000029483 2224 ntAPPRIS P3 TSL 5 BASIC13.11□□□□□ -0.31
Trim3Q9R1R2 Ppp1r12b-209ENSMUST00000168381 3621 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Trim3Q9R1R2 Dolpp1-202ENSMUST00000113612 1958 ntTSL 3 BASIC13.11□□□□□ -0.31
Trim3Q9R1R2 Gabpb1-205ENSMUST00000110424 2613 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
Trim3Q9R1R2 Mob1a-202ENSMUST00000055261 4412 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Trim3Q9R1R2 A3galt2-202ENSMUST00000106077 2114 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
Trim3Q9R1R2 Crem-201ENSMUST00000025069 2931 ntTSL 5 BASIC13.1□□□□□ -0.31
Trim3Q9R1R2 Gm12500-202ENSMUST00000186471 2428 ntBASIC13.1□□□□□ -0.31
Trim3Q9R1R2 P2rx3-202ENSMUST00000111613 1764 ntAPPRIS ALT1 TSL 5 BASIC13.1□□□□□ -0.31
Trim3Q9R1R2 Fis1-203ENSMUST00000111097 601 ntTSL 2 BASIC13.1□□□□□ -0.31
Trim3Q9R1R2 Hist3h2bb-ps-201ENSMUST00000117558 465 ntBASIC13.1□□□□□ -0.31
Trim3Q9R1R2 Gm9719-201ENSMUST00000162765 543 ntBASIC13.1□□□□□ -0.31
Trim3Q9R1R2 Gm7030-203ENSMUST00000173322 913 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Trim3Q9R1R2 Gm26517-201ENSMUST00000181279 1172 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Trim3Q9R1R2 Mir7023-201ENSMUST00000185093 64 ntBASIC13.1□□□□□ -0.31
Trim3Q9R1R2 Fis1-201ENSMUST00000019198 786 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Trim3Q9R1R2 Prok2-204ENSMUST00000203738 695 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Trim3Q9R1R2 Vsig2-204ENSMUST00000215271 891 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Trim3Q9R1R2 Rbfox2-208ENSMUST00000227930 1218 ntBASIC13.1□□□□□ -0.31
Trim3Q9R1R2 AC158982.1-201ENSMUST00000228377 901 ntBASIC13.1□□□□□ -0.31
Trim3Q9R1R2 Gm7030-201ENSMUST00000046131 913 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
Trim3Q9R1R2 Stox2-201ENSMUST00000079195 10467 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Trim3Q9R1R2 Syvn1-201ENSMUST00000025723 2780 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
Trim3Q9R1R2 Kif1c-204ENSMUST00000137119 6596 ntAPPRIS P2 TSL 5 BASIC13.1□□□□□ -0.31
Trim3Q9R1R2 Gm3002-201ENSMUST00000170480 1955 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
Trim3Q9R1R2 Gm3005-202ENSMUST00000178728 1955 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
Trim3Q9R1R2 Kcnab2-202ENSMUST00000105648 1576 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
Trim3Q9R1R2 Gm18244-201ENSMUST00000219747 1566 ntBASIC13.1□□□□□ -0.31
Trim3Q9R1R2 Clic6-201ENSMUST00000023670 3758 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Trim3Q9R1R2 Mdga2-201ENSMUST00000037181 9833 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Trim3Q9R1R2 Ikzf4-201ENSMUST00000133342 5150 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
Trim3Q9R1R2 Tjap1-211ENSMUST00000225080 2412 ntAPPRIS P2 BASIC13.1□□□□□ -0.31
Trim3Q9R1R2 AC159621.2-201ENSMUST00000223519 1326 ntBASIC13.1□□□□□ -0.31
Trim3Q9R1R2 Grin2c-201ENSMUST00000003351 4279 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
Trim3Q9R1R2 Ist1-201ENSMUST00000034164 2304 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Trim3Q9R1R2 Aff4-201ENSMUST00000060945 10099 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Retrieved 100 of 76,532 protein–RNA pairs in 25.5 ms