Protein–RNA interactions for Protein: Q62158

Trim27, Zinc finger protein RFP, mousemouse

Predictions only

Length 513 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim27Q62158 Gm44872-201ENSMUST00000207864 420 ntBASIC17.07■□□□□ 0.32
Trim27Q62158 Gm26953-206ENSMUST00000212840 619 ntTSL 5 BASIC17.07■□□□□ 0.32
Trim27Q62158 Myl6b-201ENSMUST00000026428 1026 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trim27Q62158 Gm8225-201ENSMUST00000090257 879 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trim27Q62158 Lysmd4-201ENSMUST00000058771 2898 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trim27Q62158 Fbxl19-202ENSMUST00000186116 3641 ntTSL 5 BASIC17.07■□□□□ 0.32
Trim27Q62158 Tcirg1-201ENSMUST00000001801 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trim27Q62158 9030612E09Rik-201ENSMUST00000053792 1859 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
Trim27Q62158 Mrgprh-201ENSMUST00000075296 1809 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
Trim27Q62158 Morc4-202ENSMUST00000087401 3862 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trim27Q62158 Snx12-202ENSMUST00000120389 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trim27Q62158 Map7d1-201ENSMUST00000061143 3351 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trim27Q62158 Sipa1l1-202ENSMUST00000166429 8215 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trim27Q62158 Mrc2-202ENSMUST00000100335 5795 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trim27Q62158 Atp2b3-202ENSMUST00000088429 4483 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trim27Q62158 Slc12a8-202ENSMUST00000117134 2081 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Trim27Q62158 Kansl2-ps-201ENSMUST00000181818 1461 ntBASIC17.06■□□□□ 0.32
Trim27Q62158 S100b-201ENSMUST00000036387 1484 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trim27Q62158 Sipa1-202ENSMUST00000080824 3837 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trim27Q62158 Gm35721-201ENSMUST00000220294 2014 ntTSL 5 BASIC17.06■□□□□ 0.32
Trim27Q62158 Tdrd12-205ENSMUST00000205407 1412 ntTSL 5 BASIC17.06■□□□□ 0.32
Trim27Q62158 Trim52-201ENSMUST00000022708 3075 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
Trim27Q62158 2810402E24Rik-201ENSMUST00000190699 3040 ntBASIC17.06■□□□□ 0.32
Trim27Q62158 Matn3-201ENSMUST00000020899 3014 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trim27Q62158 Ankrd10-202ENSMUST00000169782 5156 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Trim27Q62158 Atl1-201ENSMUST00000021466 5150 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trim27Q62158 Fam57b-202ENSMUST00000098032 1894 ntTSL 5 BASIC17.06■□□□□ 0.32
Trim27Q62158 Kcnh1-201ENSMUST00000078470 7242 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trim27Q62158 Zc3h13-203ENSMUST00000227049 6144 ntAPPRIS ALT2 BASIC17.06■□□□□ 0.32
Trim27Q62158 Gm6263-201ENSMUST00000120029 1342 ntBASIC17.06■□□□□ 0.32
Trim27Q62158 Gm29374-201ENSMUST00000187198 1340 ntTSL 3 BASIC17.06■□□□□ 0.32
Trim27Q62158 E130317F20Rik-202ENSMUST00000217802 3420 ntBASIC17.06■□□□□ 0.32
Trim27Q62158 Gfpt1-203ENSMUST00000113657 1200 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Trim27Q62158 Lcn6-202ENSMUST00000114197 635 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Trim27Q62158 Gm6912-201ENSMUST00000117218 544 ntBASIC17.06■□□□□ 0.32
Trim27Q62158 E130201H02Rik-201ENSMUST00000123576 851 ntBASIC17.06■□□□□ 0.32
Trim27Q62158 Gm15747-202ENSMUST00000151096 524 ntTSL 3 BASIC17.06■□□□□ 0.32
Trim27Q62158 Pax8-208ENSMUST00000153601 1226 ntTSL 5 BASIC17.06■□□□□ 0.32
Trim27Q62158 Gm15825-201ENSMUST00000159108 918 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Trim27Q62158 Gm16137-201ENSMUST00000161571 664 ntTSL 5 BASIC17.06■□□□□ 0.32
Trim27Q62158 Gm15917-201ENSMUST00000162771 487 ntTSL 2 BASIC17.06■□□□□ 0.32
Trim27Q62158 AC238811.1-201ENSMUST00000225302 441 ntBASIC17.06■□□□□ 0.32
Trim27Q62158 Hist1h3b-201ENSMUST00000091703 620 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
Trim27Q62158 2900055J20Rik-201ENSMUST00000096572 723 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
Trim27Q62158 Nfxl1-202ENSMUST00000087216 3712 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
Trim27Q62158 Jazf1-201ENSMUST00000074541 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trim27Q62158 Tesmin-202ENSMUST00000127142 1714 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trim27Q62158 Scin-202ENSMUST00000078481 2654 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Trim27Q62158 Sirt3-210ENSMUST00000211179 1606 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
Trim27Q62158 Syngap1-202ENSMUST00000177932 3927 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
Trim27Q62158 Orai2-201ENSMUST00000041048 3908 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trim27Q62158 Kyat1-204ENSMUST00000113661 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trim27Q62158 Ccdc157-202ENSMUST00000101626 5153 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trim27Q62158 Iws1-206ENSMUST00000212675 2936 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
Trim27Q62158 Hnrnpul1-201ENSMUST00000043765 3354 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Trim27Q62158 Ldha-202ENSMUST00000048209 1588 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trim27Q62158 Tfe3-201ENSMUST00000077680 3277 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trim27Q62158 Syt8-204ENSMUST00000118276 1503 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trim27Q62158 Mast2-201ENSMUST00000003908 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trim27Q62158 Il12rb1-205ENSMUST00000212657 2741 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
Trim27Q62158 Cdk19-202ENSMUST00000095743 3973 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Trim27Q62158 Usp16-202ENSMUST00000119504 2562 ntTSL 5 BASIC17.05■□□□□ 0.32
Trim27Q62158 Atrip-201ENSMUST00000045011 2572 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trim27Q62158 Specc1-209ENSMUST00000201671 2523 ntTSL 5 BASIC17.05■□□□□ 0.32
Trim27Q62158 Rbbp8-201ENSMUST00000047322 3618 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trim27Q62158 Arl11-202ENSMUST00000224727 2095 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
Trim27Q62158 Bag6-203ENSMUST00000172571 3599 ntTSL 5 BASIC17.05■□□□□ 0.32
Trim27Q62158 Trib1-201ENSMUST00000067543 4330 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trim27Q62158 Nob1-201ENSMUST00000003946 1658 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trim27Q62158 Elac1-201ENSMUST00000041138 4971 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trim27Q62158 Erg-206ENSMUST00000122199 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trim27Q62158 Olfr533-202ENSMUST00000211093 2397 ntAPPRIS P1 TSL 3 BASIC17.05■□□□□ 0.32
Trim27Q62158 Casp7-201ENSMUST00000026062 2350 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trim27Q62158 Cmss1-201ENSMUST00000114371 930 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trim27Q62158 Crybb3-203ENSMUST00000118226 892 ntAPPRIS P1 TSL 3 BASIC17.05■□□□□ 0.32
Trim27Q62158 Rpl9-202ENSMUST00000118543 1193 ntTSL 2 BASIC17.05■□□□□ 0.32
Trim27Q62158 Cdpf1-202ENSMUST00000125947 706 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
Trim27Q62158 2900092O11Rik-201ENSMUST00000191770 755 ntBASIC17.05■□□□□ 0.32
Trim27Q62158 Hrasls5-201ENSMUST00000025929 1063 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trim27Q62158 Mesp1-201ENSMUST00000032760 1275 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trim27Q62158 Crybb3-201ENSMUST00000076069 816 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trim27Q62158 Ftl1-201ENSMUST00000094434 968 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trim27Q62158 Slc6a7-201ENSMUST00000025520 3342 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trim27Q62158 Entpd2-201ENSMUST00000028328 1935 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trim27Q62158 Atp2a3-207ENSMUST00000163326 4606 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
Trim27Q62158 Lrrc56-202ENSMUST00000070458 2502 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trim27Q62158 Bmper-201ENSMUST00000071982 3791 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trim27Q62158 Ascc1-201ENSMUST00000050516 1450 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trim27Q62158 Trp53-203ENSMUST00000108658 1771 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trim27Q62158 Trim15-203ENSMUST00000174195 1778 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trim27Q62158 Trp53-201ENSMUST00000005371 1772 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trim27Q62158 Cfap157-201ENSMUST00000102813 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trim27Q62158 Sun1-202ENSMUST00000078690 2608 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
Trim27Q62158 Litaf-201ENSMUST00000023143 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trim27Q62158 Ero1lb-202ENSMUST00000220811 3341 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Trim27Q62158 Pigg-202ENSMUST00000118910 3030 ntTSL 5 BASIC17.04■□□□□ 0.32
Trim27Q62158 Myh14-204ENSMUST00000207775 6499 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
Trim27Q62158 Pam-202ENSMUST00000097625 4102 ntAPPRIS P2 TSL 5 BASIC17.04■□□□□ 0.32
Trim27Q62158 Hagh-202ENSMUST00000118788 1191 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trim27Q62158 Gm15920-201ENSMUST00000118998 402 ntBASIC17.04■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 1085.3 ms