Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 Dctn1-201ENSMUST00000077407 4118 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Usf1Q61069 Tcf12-201ENSMUST00000034755 4621 ntAPPRIS ALT1 TSL 5 BASIC12.63□□□□□ -0.39
Usf1Q61069 H2-DMb2-201ENSMUST00000041982 1347 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Usf1Q61069 Degs2-202ENSMUST00000167978 1729 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Usf1Q61069 Olfml2a-201ENSMUST00000057279 5579 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Usf1Q61069 C2cd2l-206ENSMUST00000214602 2808 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Usf1Q61069 Pkp2-201ENSMUST00000039408 2918 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Usf1Q61069 Sidt2-201ENSMUST00000038488 4248 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Usf1Q61069 Hs3st5-201ENSMUST00000058738 3078 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Usf1Q61069 Rbbp9-201ENSMUST00000028915 2170 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Usf1Q61069 Sytl1-201ENSMUST00000030674 1951 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Usf1Q61069 Gpr18-201ENSMUST00000055475 1498 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Usf1Q61069 Gm10327-201ENSMUST00000105222 1002 ntBASIC12.62□□□□□ -0.39
Usf1Q61069 Cpsf4l-203ENSMUST00000106617 1123 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Usf1Q61069 Styxl1-202ENSMUST00000111161 963 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Usf1Q61069 Arpc3-203ENSMUST00000111713 708 ntTSL 3 BASIC12.62□□□□□ -0.39
Usf1Q61069 Gm15236-201ENSMUST00000117309 379 ntBASIC12.62□□□□□ -0.39
Usf1Q61069 Gm1335-201ENSMUST00000121653 386 ntBASIC12.62□□□□□ -0.39
Usf1Q61069 Pelp1-202ENSMUST00000135148 562 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Usf1Q61069 4930407G08Rik-201ENSMUST00000145831 698 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Usf1Q61069 Glo1-202ENSMUST00000167624 895 ntAPPRIS P1 TSL 2 BASIC12.62□□□□□ -0.39
Usf1Q61069 Gm7584-201ENSMUST00000175829 940 ntBASIC12.62□□□□□ -0.39
Usf1Q61069 2010106C02Rik-201ENSMUST00000191222 660 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Usf1Q61069 Gm37008-201ENSMUST00000195712 319 ntBASIC12.62□□□□□ -0.39
Usf1Q61069 Dnd1-ps-201ENSMUST00000196992 964 ntBASIC12.62□□□□□ -0.39
Usf1Q61069 Aqp10-ps-201ENSMUST00000199555 611 ntBASIC12.62□□□□□ -0.39
Usf1Q61069 Gm18056-201ENSMUST00000207670 568 ntBASIC12.62□□□□□ -0.39
Usf1Q61069 Gm18061-201ENSMUST00000208350 562 ntBASIC12.62□□□□□ -0.39
Usf1Q61069 Gm18063-201ENSMUST00000208529 568 ntBASIC12.62□□□□□ -0.39
Usf1Q61069 Gm18052-201ENSMUST00000208750 559 ntBASIC12.62□□□□□ -0.39
Usf1Q61069 Il15-202ENSMUST00000209363 1251 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Usf1Q61069 AC159747.1-201ENSMUST00000219903 265 ntBASIC12.62□□□□□ -0.39
Usf1Q61069 CT485787.1-201ENSMUST00000225617 968 ntBASIC12.62□□□□□ -0.39
Usf1Q61069 Cebpe-201ENSMUST00000064290 1241 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Usf1Q61069 Nanos3-201ENSMUST00000070102 730 ntAPPRIS P2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Usf1Q61069 Fam173a-201ENSMUST00000072735 800 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Usf1Q61069 Cryba4-201ENSMUST00000086629 746 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Usf1Q61069 Gpr31b-201ENSMUST00000091648 960 ntAPPRIS P1 BASIC12.62□□□□□ -0.39
Usf1Q61069 Ppp1r12b-202ENSMUST00000086444 3137 ntAPPRIS P2 TSL 5 BASIC12.62□□□□□ -0.39
Usf1Q61069 Ids-201ENSMUST00000101509 4972 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Usf1Q61069 Gm26560-201ENSMUST00000181240 2619 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Usf1Q61069 Ppp2r2c-201ENSMUST00000031003 4088 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Usf1Q61069 Dhx9-201ENSMUST00000042141 4616 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
Usf1Q61069 Plscr3-201ENSMUST00000019605 1927 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Usf1Q61069 Pcdha11-201ENSMUST00000115658 5359 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Usf1Q61069 Fgfr4-201ENSMUST00000005452 3324 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Usf1Q61069 Lrrc10-201ENSMUST00000073834 1428 ntAPPRIS P1 BASIC12.62□□□□□ -0.39
Usf1Q61069 Cdk16-201ENSMUST00000033380 3120 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Usf1Q61069 Gm26880-201ENSMUST00000181610 1318 ntTSL 5 BASIC12.62□□□□□ -0.39
Usf1Q61069 Fermt2-201ENSMUST00000045905 3293 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Usf1Q61069 Rbm46-201ENSMUST00000048647 1794 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
Usf1Q61069 Abr-203ENSMUST00000094012 5236 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Usf1Q61069 Cdc42se2-201ENSMUST00000064104 3069 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Usf1Q61069 Gm2762-202ENSMUST00000201517 2339 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Usf1Q61069 Klc4-201ENSMUST00000003642 2322 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Usf1Q61069 1500009C09Rik-202ENSMUST00000143238 1552 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Usf1Q61069 Gm9742-201ENSMUST00000165220 1553 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Usf1Q61069 Ttc14-202ENSMUST00000108210 2684 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
Usf1Q61069 Tns1-222ENSMUST00000212888 5643 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
Usf1Q61069 Mettl17-206ENSMUST00000164902 1461 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
Usf1Q61069 Bbs5-201ENSMUST00000074963 1468 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Usf1Q61069 Prkacb-202ENSMUST00000102515 4347 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Usf1Q61069 Gpr160-203ENSMUST00000108259 1916 ntAPPRIS P1 TSL 3 BASIC12.61□□□□□ -0.39
Usf1Q61069 Taldo1-204ENSMUST00000211654 1362 ntTSL 5 BASIC12.61□□□□□ -0.39
Usf1Q61069 Ighv7-3-201ENSMUST00000103461 361 ntAPPRIS P1 BASIC12.61□□□□□ -0.39
Usf1Q61069 Thoc6-204ENSMUST00000115490 1157 ntTSL 5 BASIC12.61□□□□□ -0.39
Usf1Q61069 Gm10156-201ENSMUST00000122364 462 ntBASIC12.61□□□□□ -0.39
Usf1Q61069 S100a14-202ENSMUST00000167598 1059 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Usf1Q61069 Gm27501-201ENSMUST00000183599 107 ntBASIC12.61□□□□□ -0.39
Usf1Q61069 Neurl3-202ENSMUST00000188666 1206 ntTSL 5 BASIC12.61□□□□□ -0.39
Usf1Q61069 Gm4857-201ENSMUST00000192718 785 ntBASIC12.61□□□□□ -0.39
Usf1Q61069 Gm44364-201ENSMUST00000198368 141 ntBASIC12.61□□□□□ -0.39
Usf1Q61069 Gm7783-201ENSMUST00000204795 781 ntBASIC12.61□□□□□ -0.39
Usf1Q61069 Gm42303-201ENSMUST00000209960 1170 ntTSL 5 BASIC12.61□□□□□ -0.39
Usf1Q61069 Ormdl2-204ENSMUST00000219524 724 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
Usf1Q61069 Lsm7-208ENSMUST00000220225 1129 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Usf1Q61069 Gm45930-201ENSMUST00000221330 292 ntBASIC12.61□□□□□ -0.39
Usf1Q61069 Txn2-201ENSMUST00000005487 1298 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Usf1Q61069 Utp23-201ENSMUST00000059599 740 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Usf1Q61069 Gm13199-201ENSMUST00000071016 747 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Usf1Q61069 Gm5161-201ENSMUST00000075243 853 ntBASIC12.61□□□□□ -0.39
Usf1Q61069 Gng8-201ENSMUST00000078182 910 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Usf1Q61069 Strn4-201ENSMUST00000019220 3535 ntAPPRIS P4 TSL 1 (best) BASIC12.61□□□□□ -0.39
Usf1Q61069 AC159196.2-201ENSMUST00000224082 1622 ntBASIC12.61□□□□□ -0.39
Usf1Q61069 Ahcy-201ENSMUST00000054607 2543 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Usf1Q61069 Cdc42ep1-201ENSMUST00000059619 2542 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Usf1Q61069 Mtus2-204ENSMUST00000110514 1532 ntTSL 5 BASIC12.61□□□□□ -0.39
Usf1Q61069 Synj1-203ENSMUST00000121759 7090 ntAPPRIS P4 TSL 5 BASIC12.61□□□□□ -0.39
Usf1Q61069 Zscan2-201ENSMUST00000044115 2310 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Usf1Q61069 Srsf11-204ENSMUST00000121326 3106 ntAPPRIS P4 TSL 5 BASIC12.61□□□□□ -0.39
Usf1Q61069 Gm13859-201ENSMUST00000119936 1423 ntBASIC12.61□□□□□ -0.39
Usf1Q61069 Abhd6-202ENSMUST00000166497 2226 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Usf1Q61069 Rnf138-202ENSMUST00000072847 3002 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Usf1Q61069 Fpr1-201ENSMUST00000061516 1324 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Usf1Q61069 Lrch4-202ENSMUST00000175968 2036 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
Usf1Q61069 Strn4-202ENSMUST00000108495 3082 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Usf1Q61069 Ric8b-201ENSMUST00000038523 3069 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Usf1Q61069 Vapb-201ENSMUST00000067530 7029 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Usf1Q61069 Spo11-202ENSMUST00000109125 1591 ntAPPRIS ALT1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Usf1Q61069 Slc29a1-203ENSMUST00000097317 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Retrieved 100 of 76,532 protein–RNA pairs in 29.2 ms