Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Gm26878-201ENSMUST00000181778 1644 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Upf3aQ3ULJ3 Tmub2-205ENSMUST00000156326 2249 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Upf3aQ3ULJ3 Prickle1-201ENSMUST00000048982 4085 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Upf3aQ3ULJ3 Keap1-205ENSMUST00000194542 3151 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Upf3aQ3ULJ3 Rbm33-202ENSMUST00000059644 9510 ntAPPRIS P2 TSL 5 BASIC14.58□□□□□ -0.08
Upf3aQ3ULJ3 Neto1-201ENSMUST00000058829 3531 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Upf3aQ3ULJ3 Nop58-201ENSMUST00000027174 1713 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
Upf3aQ3ULJ3 1700066M21Rik-201ENSMUST00000042734 3008 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Upf3aQ3ULJ3 Gk-201ENSMUST00000026039 4340 ntAPPRIS ALT1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Upf3aQ3ULJ3 Gm16534-201ENSMUST00000149300 1492 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Upf3aQ3ULJ3 Antxr1-205ENSMUST00000205033 3160 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Upf3aQ3ULJ3 Prdm4-201ENSMUST00000037646 3877 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Upf3aQ3ULJ3 Slc8b1-201ENSMUST00000068326 2898 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Upf3aQ3ULJ3 Ctsk-201ENSMUST00000015664 1512 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Upf3aQ3ULJ3 4933436I20Rik-202ENSMUST00000190615 1509 ntTSL 5 BASIC14.57□□□□□ -0.08
Upf3aQ3ULJ3 Hoxb8-201ENSMUST00000052650 2635 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Upf3aQ3ULJ3 Parg-202ENSMUST00000163350 3374 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Upf3aQ3ULJ3 Ubtf-205ENSMUST00000107119 3013 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Upf3aQ3ULJ3 Mtfr2-201ENSMUST00000169712 1991 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Upf3aQ3ULJ3 Ppp1r15b-201ENSMUST00000052529 5594 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Upf3aQ3ULJ3 Nfu1-203ENSMUST00000120240 1195 ntAPPRIS P3 TSL 5 BASIC14.57□□□□□ -0.08
Upf3aQ3ULJ3 Gm16177-201ENSMUST00000120728 718 ntBASIC14.57□□□□□ -0.08
Upf3aQ3ULJ3 Fuom-203ENSMUST00000121115 872 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Upf3aQ3ULJ3 Rab11fip4os2-201ENSMUST00000123067 689 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Upf3aQ3ULJ3 Gm13562-201ENSMUST00000125198 797 ntTSL 2 BASIC14.57□□□□□ -0.08
Upf3aQ3ULJ3 Gm6152-201ENSMUST00000151704 340 ntBASIC14.57□□□□□ -0.08
Upf3aQ3ULJ3 Ppm1h-208ENSMUST00000162969 811 ntTSL 3 BASIC14.57□□□□□ -0.08
Upf3aQ3ULJ3 Gm12057-202ENSMUST00000189990 882 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
Upf3aQ3ULJ3 Gm43818-201ENSMUST00000200605 466 ntBASIC14.57□□□□□ -0.08
Upf3aQ3ULJ3 Tomm7-201ENSMUST00000030851 1125 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Upf3aQ3ULJ3 Ctgf-201ENSMUST00000020171 2398 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Upf3aQ3ULJ3 Susd6-201ENSMUST00000068519 4977 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Upf3aQ3ULJ3 Ndst2-202ENSMUST00000223679 3907 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
Upf3aQ3ULJ3 Adal-201ENSMUST00000028702 2471 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Upf3aQ3ULJ3 Tcf19-202ENSMUST00000160885 1732 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Upf3aQ3ULJ3 Tcf4-248ENSMUST00000202354 2120 ntTSL 5 BASIC14.57□□□□□ -0.08
Upf3aQ3ULJ3 Tcf4-257ENSMUST00000202772 2125 ntTSL 5 BASIC14.57□□□□□ -0.08
Upf3aQ3ULJ3 Cstf2-203ENSMUST00000113287 3661 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Upf3aQ3ULJ3 Ifi35-201ENSMUST00000010502 1362 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Upf3aQ3ULJ3 Maged2-203ENSMUST00000112699 2183 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Upf3aQ3ULJ3 4933421O10Rik-201ENSMUST00000155691 3847 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Upf3aQ3ULJ3 Mypn-202ENSMUST00000218978 1833 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Upf3aQ3ULJ3 Dera-207ENSMUST00000203693 1446 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Upf3aQ3ULJ3 Nrcam-202ENSMUST00000110748 6275 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Upf3aQ3ULJ3 Oprm1-214ENSMUST00000105605 1503 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Upf3aQ3ULJ3 Oprm1-201ENSMUST00000000783 1500 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Upf3aQ3ULJ3 Id4-201ENSMUST00000021810 3849 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Upf3aQ3ULJ3 Igsf5-202ENSMUST00000081093 1554 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Upf3aQ3ULJ3 Traf7-210ENSMUST00000176353 2503 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Upf3aQ3ULJ3 Apbb1-212ENSMUST00000189072 2085 ntTSL 5 BASIC14.56□□□□□ -0.08
Upf3aQ3ULJ3 Sgce-203ENSMUST00000101677 1656 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Upf3aQ3ULJ3 Gm44645-201ENSMUST00000205492 1653 ntBASIC14.56□□□□□ -0.08
Upf3aQ3ULJ3 Trp73-201ENSMUST00000097762 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Upf3aQ3ULJ3 Gm15512-201ENSMUST00000137359 2257 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Upf3aQ3ULJ3 Mettl11b-201ENSMUST00000159679 1790 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Upf3aQ3ULJ3 Gm5187-201ENSMUST00000117317 991 ntBASIC14.56□□□□□ -0.08
Upf3aQ3ULJ3 Myadml2os-201ENSMUST00000126642 1044 ntTSL 5 BASIC14.56□□□□□ -0.08
Upf3aQ3ULJ3 Gm13070-201ENSMUST00000146532 768 ntTSL 5 BASIC14.56□□□□□ -0.08
Upf3aQ3ULJ3 Proscos-202ENSMUST00000178990 666 ntBASIC14.56□□□□□ -0.08
Upf3aQ3ULJ3 Mhrt-201ENSMUST00000181782 828 ntTSL 2 BASIC14.56□□□□□ -0.08
Upf3aQ3ULJ3 Gm8565-201ENSMUST00000183259 1014 ntBASIC14.56□□□□□ -0.08
Upf3aQ3ULJ3 Gm27514-201ENSMUST00000183692 110 ntBASIC14.56□□□□□ -0.08
Upf3aQ3ULJ3 Cryaa-201ENSMUST00000019192 1176 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Upf3aQ3ULJ3 Iffo1-201ENSMUST00000117675 2833 ntAPPRIS P4 TSL 1 (best) BASIC14.56□□□□□ -0.08
Upf3aQ3ULJ3 Sra1-205ENSMUST00000173875 2360 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Upf3aQ3ULJ3 F10-204ENSMUST00000128418 1395 ntTSL 5 BASIC14.56□□□□□ -0.08
Upf3aQ3ULJ3 Gm44981-201ENSMUST00000205549 1943 ntBASIC14.56□□□□□ -0.08
Upf3aQ3ULJ3 Sbno2-204ENSMUST00000217972 2462 ntTSL 2 BASIC14.56□□□□□ -0.08
Upf3aQ3ULJ3 Rubcn-201ENSMUST00000040986 5257 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
Upf3aQ3ULJ3 Tpbg-201ENSMUST00000006559 3603 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Upf3aQ3ULJ3 Hsph1-209ENSMUST00000202089 3054 ntTSL 5 BASIC14.56□□□□□ -0.08
Upf3aQ3ULJ3 Pcdha11-202ENSMUST00000115657 5360 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Upf3aQ3ULJ3 Arhgef1-201ENSMUST00000047873 3212 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Upf3aQ3ULJ3 Gm13730-201ENSMUST00000121036 1462 ntBASIC14.56□□□□□ -0.08
Upf3aQ3ULJ3 Pdss2-202ENSMUST00000159139 1467 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Upf3aQ3ULJ3 Dctn4-202ENSMUST00000223590 1530 ntBASIC14.56□□□□□ -0.08
Upf3aQ3ULJ3 Ptprs-202ENSMUST00000086828 5608 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Upf3aQ3ULJ3 Cct6b-202ENSMUST00000100722 1871 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Upf3aQ3ULJ3 Apbb1-215ENSMUST00000190369 1882 ntTSL 5 BASIC14.55□□□□□ -0.08
Upf3aQ3ULJ3 Slc33a1-202ENSMUST00000160883 1978 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
Upf3aQ3ULJ3 Ncf1-201ENSMUST00000016094 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Upf3aQ3ULJ3 Mlkl-201ENSMUST00000056157 2003 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Upf3aQ3ULJ3 Folr1-205ENSMUST00000106986 1286 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Upf3aQ3ULJ3 Arpc3-203ENSMUST00000111713 708 ntTSL 3 BASIC14.55□□□□□ -0.08
Upf3aQ3ULJ3 Mir1247-201ENSMUST00000116706 82 ntBASIC14.55□□□□□ -0.08
Upf3aQ3ULJ3 Gm15198-201ENSMUST00000117283 177 ntBASIC14.55□□□□□ -0.08
Upf3aQ3ULJ3 Gm14455-201ENSMUST00000138288 2146 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Upf3aQ3ULJ3 Gm15444-201ENSMUST00000148335 388 ntTSL 5 BASIC14.55□□□□□ -0.08
Upf3aQ3ULJ3 Ccdc70-201ENSMUST00000017193 1054 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Upf3aQ3ULJ3 Mturn-202ENSMUST00000187701 503 ntTSL 5 BASIC14.55□□□□□ -0.08
Upf3aQ3ULJ3 1600017P15Rik-202ENSMUST00000193960 890 ntBASIC14.55□□□□□ -0.08
Upf3aQ3ULJ3 AC159896.2-201ENSMUST00000214753 269 ntBASIC14.55□□□□□ -0.08
Upf3aQ3ULJ3 AC154319.1-201ENSMUST00000216330 312 ntBASIC14.55□□□□□ -0.08
Upf3aQ3ULJ3 AL589735.1-201ENSMUST00000224353 270 ntBASIC14.55□□□□□ -0.08
Upf3aQ3ULJ3 Nacc2-201ENSMUST00000028300 6378 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Upf3aQ3ULJ3 Alkbh3-201ENSMUST00000040005 1228 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Upf3aQ3ULJ3 Il27-201ENSMUST00000058429 1021 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Upf3aQ3ULJ3 Ppil3-201ENSMUST00000081677 896 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Upf3aQ3ULJ3 Rpl10l-201ENSMUST00000081908 1023 ntAPPRIS P1 BASIC14.55□□□□□ -0.08
Upf3aQ3ULJ3 Ccdc33-202ENSMUST00000098681 1093 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Retrieved 100 of 76,532 protein–RNA pairs in 41.1 ms