Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Ncs1-201ENSMUST00000000199 4653 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Msx1P13297 Slc5a2-202ENSMUST00000118169 2277 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Msx1P13297 Cep170b-203ENSMUST00000179041 6565 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
Msx1P13297 4921504A21Rik-201ENSMUST00000180594 2156 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Msx1P13297 Fmn2-201ENSMUST00000030039 6442 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Msx1P13297 Gnpda2-201ENSMUST00000031117 1894 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
Msx1P13297 Gm4981-201ENSMUST00000099726 1854 ntAPPRIS P1 BASIC13.25□□□□□ -0.29
Msx1P13297 1810014B01Rik-201ENSMUST00000181587 1661 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Msx1P13297 Gm8131-201ENSMUST00000213783 1570 ntBASIC13.25□□□□□ -0.29
Msx1P13297 Celf1-202ENSMUST00000068726 7851 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Msx1P13297 Camk2d-203ENSMUST00000106399 4169 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Msx1P13297 Ghr-201ENSMUST00000069451 4175 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Msx1P13297 Ttll5-203ENSMUST00000095536 4150 ntAPPRIS ALT2 TSL 2 BASIC13.25□□□□□ -0.29
Msx1P13297 Pxdn-201ENSMUST00000118321 2698 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Msx1P13297 Ifna2-201ENSMUST00000105147 1032 ntAPPRIS P1 BASIC13.25□□□□□ -0.29
Msx1P13297 Mrpl40-202ENSMUST00000119273 778 ntTSL 3 BASIC13.25□□□□□ -0.29
Msx1P13297 Nudcd2-203ENSMUST00000127382 727 ntTSL 2 BASIC13.25□□□□□ -0.29
Msx1P13297 Gm22993-201ENSMUST00000175423 254 ntBASIC13.25□□□□□ -0.29
Msx1P13297 Gm27631-201ENSMUST00000184163 466 ntBASIC13.25□□□□□ -0.29
Msx1P13297 Gm28760-201ENSMUST00000185995 736 ntBASIC13.25□□□□□ -0.29
Msx1P13297 Gm9723-201ENSMUST00000192100 457 ntBASIC13.25□□□□□ -0.29
Msx1P13297 Ip6k2-210ENSMUST00000194875 748 ntTSL 2 BASIC13.25□□□□□ -0.29
Msx1P13297 Gm5149-201ENSMUST00000199768 620 ntTSL 3 BASIC13.25□□□□□ -0.29
Msx1P13297 1700028J19Rik-203ENSMUST00000206686 1166 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Msx1P13297 Gm7390-201ENSMUST00000212452 1216 ntBASIC13.25□□□□□ -0.29
Msx1P13297 Rpp21-201ENSMUST00000025319 729 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Msx1P13297 Nppc-201ENSMUST00000027449 1042 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Msx1P13297 Tgif2-ps2-201ENSMUST00000061746 711 ntBASIC13.25□□□□□ -0.29
Msx1P13297 Hist1h3f-201ENSMUST00000075558 1261 ntAPPRIS P1 BASIC13.25□□□□□ -0.29
Msx1P13297 Slc22a15-201ENSMUST00000106928 6573 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
Msx1P13297 AU040320-201ENSMUST00000047431 4384 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
Msx1P13297 Naa15-205ENSMUST00000193266 7480 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Msx1P13297 Nrap-201ENSMUST00000040711 5334 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
Msx1P13297 Il11ra1-201ENSMUST00000098132 2009 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Msx1P13297 Vldlr-207ENSMUST00000167487 7971 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
Msx1P13297 Dnm1-217ENSMUST00000202578 2820 ntAPPRIS P2 TSL 5 BASIC13.25□□□□□ -0.29
Msx1P13297 Adgrg5-205ENSMUST00000166802 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
Msx1P13297 Cyp2f2-201ENSMUST00000003100 1866 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Msx1P13297 Casc3-204ENSMUST00000169695 3741 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Msx1P13297 Gprc5c-208ENSMUST00000177952 1809 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
Msx1P13297 Tmem9b-202ENSMUST00000118571 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
Msx1P13297 Mllt10-204ENSMUST00000114680 3543 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Msx1P13297 Ccdc158-203ENSMUST00000150359 3353 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Msx1P13297 Kcnc2-201ENSMUST00000092175 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Msx1P13297 Ash2l-201ENSMUST00000068892 3307 ntAPPRIS P4 TSL 1 (best) BASIC13.24□□□□□ -0.29
Msx1P13297 Zfp647-201ENSMUST00000048854 1608 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Msx1P13297 Plch2-210ENSMUST00000176194 5619 ntAPPRIS ALT2 TSL 5 BASIC13.24□□□□□ -0.29
Msx1P13297 Klhl32-204ENSMUST00000108218 7143 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
Msx1P13297 Tle3-201ENSMUST00000034820 4646 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Msx1P13297 Ap4e1-203ENSMUST00000110394 2271 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Msx1P13297 Sema3b-201ENSMUST00000073448 2987 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Msx1P13297 Lypd1-202ENSMUST00000159417 6464 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Msx1P13297 Lamb2-201ENSMUST00000065014 5629 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Msx1P13297 Ralgapb-203ENSMUST00000109486 8383 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Msx1P13297 Dnajc6-205ENSMUST00000106933 5191 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Msx1P13297 Krt20-201ENSMUST00000017743 1927 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Msx1P13297 Bola2-202ENSMUST00000106369 642 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Msx1P13297 Gm14740-201ENSMUST00000118538 1150 ntBASIC13.24□□□□□ -0.29
Msx1P13297 Gm15806-201ENSMUST00000120696 955 ntBASIC13.24□□□□□ -0.29
Msx1P13297 Gm11535-201ENSMUST00000145517 778 ntTSL 3 BASIC13.24□□□□□ -0.29
Msx1P13297 Gm17150-201ENSMUST00000165577 381 ntBASIC13.24□□□□□ -0.29
Msx1P13297 Gstt1-201ENSMUST00000001713 1037 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Msx1P13297 Gm38188-201ENSMUST00000192879 856 ntBASIC13.24□□□□□ -0.29
Msx1P13297 Crip2-202ENSMUST00000196015 772 ntTSL 3 BASIC13.24□□□□□ -0.29
Msx1P13297 2310016G11Rik-202ENSMUST00000209111 733 ntTSL 3 BASIC13.24□□□□□ -0.29
Msx1P13297 Gm9803-202ENSMUST00000216543 456 ntTSL 5 BASIC13.24□□□□□ -0.29
Msx1P13297 Gm9229-201ENSMUST00000222777 126 ntBASIC13.24□□□□□ -0.29
Msx1P13297 AC154687.2-201ENSMUST00000223853 640 ntBASIC13.24□□□□□ -0.29
Msx1P13297 Snx24-201ENSMUST00000025417 994 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Msx1P13297 Nupr1-201ENSMUST00000032961 829 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Msx1P13297 Gm9797-201ENSMUST00000052902 613 ntBASIC13.24□□□□□ -0.29
Msx1P13297 Rassf8-202ENSMUST00000058538 1131 ntBASIC13.24□□□□□ -0.29
Msx1P13297 Mrps21-202ENSMUST00000072587 405 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Msx1P13297 Gm10244-201ENSMUST00000090237 830 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Msx1P13297 Fbxo46-202ENSMUST00000165913 2498 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Msx1P13297 Brpf1-209ENSMUST00000204198 4307 ntTSL 5 BASIC13.24□□□□□ -0.29
Msx1P13297 Ccnf-201ENSMUST00000115390 3099 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Msx1P13297 Tle1-204ENSMUST00000102848 3660 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Msx1P13297 Rpa2-201ENSMUST00000102561 1813 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Msx1P13297 Klf4-201ENSMUST00000107619 3029 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Msx1P13297 Srp72-202ENSMUST00000120550 2297 ntAPPRIS ALT2 TSL 5 BASIC13.24□□□□□ -0.29
Msx1P13297 Hps5-201ENSMUST00000014562 4953 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
Msx1P13297 Pcdh10-201ENSMUST00000166126 7081 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Msx1P13297 Arid3a-202ENSMUST00000105376 4892 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
Msx1P13297 Nfatc4-204ENSMUST00000226357 2680 ntAPPRIS ALT2 BASIC13.24□□□□□ -0.29
Msx1P13297 Ap4b1-202ENSMUST00000076599 2692 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Msx1P13297 Dnaja3-201ENSMUST00000060067 2648 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
Msx1P13297 Msi1-208ENSMUST00000150779 3133 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Msx1P13297 Nfyb-204ENSMUST00000130911 2554 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Msx1P13297 Bcat2-202ENSMUST00000120864 1536 ntTSL 5 BASIC13.23□□□□□ -0.29
Msx1P13297 Gm5763-201ENSMUST00000155951 1530 ntBASIC13.23□□□□□ -0.29
Msx1P13297 Cacna1g-203ENSMUST00000103166 8104 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
Msx1P13297 Per1-203ENSMUST00000102605 4537 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
Msx1P13297 Kcnq2-202ENSMUST00000049792 2920 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Msx1P13297 Cdk2-202ENSMUST00000026416 2406 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Msx1P13297 Ciart-202ENSMUST00000159739 1939 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Msx1P13297 Fntb-206ENSMUST00000137826 1442 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
Msx1P13297 Prok2-202ENSMUST00000032152 1423 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Msx1P13297 Slc39a11-201ENSMUST00000042657 2781 ntAPPRIS ALT2 TSL 2 BASIC13.23□□□□□ -0.29
Msx1P13297 Pou5f1-201ENSMUST00000025271 1362 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Retrieved 100 of 76,532 protein–RNA pairs in 30.2 ms