Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Igf2-205ENSMUST00000121128 4722 ntTSL 2 BASIC16.42■□□□□ 0.22
Col3a1P08121 Samd4-203ENSMUST00000125113 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Col3a1P08121 Gm26721-201ENSMUST00000181723 992 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Col3a1P08121 Gm27682-201ENSMUST00000183930 110 ntBASIC16.42■□□□□ 0.22
Col3a1P08121 Gm44756-201ENSMUST00000206172 1069 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Col3a1P08121 Ubiad1-201ENSMUST00000051633 2992 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Col3a1P08121 Slc39a11-201ENSMUST00000042657 2781 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
Col3a1P08121 Gm13111-201ENSMUST00000136217 3542 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Col3a1P08121 Prdx2-203ENSMUST00000109734 1612 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
Col3a1P08121 Rnps1-202ENSMUST00000115371 1617 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Col3a1P08121 Angptl7-201ENSMUST00000030840 2157 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Col3a1P08121 Slc8a3-202ENSMUST00000085238 4927 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Col3a1P08121 Mex3c-201ENSMUST00000091852 3738 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Col3a1P08121 Rtp3-201ENSMUST00000084922 1425 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
Col3a1P08121 Rbm26-201ENSMUST00000022715 3633 ntTSL 5 BASIC16.41■□□□□ 0.22
Col3a1P08121 Sh2b1-204ENSMUST00000205497 2854 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Col3a1P08121 Tlk2-209ENSMUST00000145048 2776 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Col3a1P08121 Mark2-201ENSMUST00000025921 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Col3a1P08121 Umad1-208ENSMUST00000162034 2015 ntAPPRIS ALT2 TSL 3 BASIC16.41■□□□□ 0.22
Col3a1P08121 Mink1-202ENSMUST00000072873 4610 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
Col3a1P08121 H2-Q6-202ENSMUST00000174699 2085 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
Col3a1P08121 Rhox2f-201ENSMUST00000115173 799 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
Col3a1P08121 Pelp1-202ENSMUST00000135148 562 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Col3a1P08121 Mrto4-ps1-201ENSMUST00000220565 721 ntBASIC16.41■□□□□ 0.22
Col3a1P08121 CT573086.1-201ENSMUST00000227202 1074 ntBASIC16.41■□□□□ 0.22
Col3a1P08121 Gm5129-201ENSMUST00000065372 300 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
Col3a1P08121 Tescl-201ENSMUST00000069562 855 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
Col3a1P08121 Mpp4-210ENSMUST00000191200 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Col3a1P08121 Syngr2-201ENSMUST00000026649 1520 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Col3a1P08121 Shisa7-201ENSMUST00000066041 6006 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col3a1P08121 Cyb561d1-202ENSMUST00000106654 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col3a1P08121 Hps5-202ENSMUST00000107653 4702 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col3a1P08121 Glipr2-202ENSMUST00000107855 1816 ntTSL 2 BASIC16.4■□□□□ 0.22
Col3a1P08121 Mrgprh-201ENSMUST00000075296 1809 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
Col3a1P08121 Zmynd11-207ENSMUST00000110638 4003 ntTSL 5 BASIC16.4■□□□□ 0.22
Col3a1P08121 Dmkn-205ENSMUST00000165887 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col3a1P08121 Id4-201ENSMUST00000021810 3849 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col3a1P08121 Trpc7-206ENSMUST00000173513 2241 ntTSL 5 BASIC16.4■□□□□ 0.22
Col3a1P08121 Mmp14-206ENSMUST00000225641 3238 ntBASIC16.4■□□□□ 0.22
Col3a1P08121 Lrp2bp-202ENSMUST00000110380 1603 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col3a1P08121 2310022A10Rik-204ENSMUST00000187032 1871 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col3a1P08121 Adnp-202ENSMUST00000088001 4932 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col3a1P08121 Rfx5-201ENSMUST00000029772 4189 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col3a1P08121 Txn2-203ENSMUST00000109747 1778 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Col3a1P08121 Gm2895-201ENSMUST00000171591 3194 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Col3a1P08121 Plaur-201ENSMUST00000002284 1506 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col3a1P08121 Rasa4-202ENSMUST00000100570 2660 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Col3a1P08121 Folr1-205ENSMUST00000106986 1286 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col3a1P08121 Mrpl2-203ENSMUST00000113430 991 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
Col3a1P08121 Rhox2b-201ENSMUST00000115191 799 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col3a1P08121 Gm15198-201ENSMUST00000117283 177 ntBASIC16.4■□□□□ 0.22
Col3a1P08121 1700080E11Rik-202ENSMUST00000190661 682 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Col3a1P08121 Gm43763-201ENSMUST00000201761 683 ntTSL 3 BASIC16.4■□□□□ 0.22
Col3a1P08121 Gm44064-201ENSMUST00000204964 1087 ntBASIC16.4■□□□□ 0.22
Col3a1P08121 Hcrtr1-202ENSMUST00000119423 2439 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
Col3a1P08121 Gm11992-201ENSMUST00000043285 2400 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col3a1P08121 Pdzd4-201ENSMUST00000002080 3970 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col3a1P08121 Tap1-206ENSMUST00000170086 2953 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col3a1P08121 Syt17-204ENSMUST00000203796 2957 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col3a1P08121 Gnpat-201ENSMUST00000034466 2984 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col3a1P08121 Gm29683-203ENSMUST00000209071 2488 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Col3a1P08121 Tmem9-201ENSMUST00000063719 1806 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col3a1P08121 Ralgds-203ENSMUST00000113893 3683 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col3a1P08121 Cacna1a-202ENSMUST00000122053 7589 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.22
Col3a1P08121 Itfg1-201ENSMUST00000034140 3306 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Col3a1P08121 Gnao1-203ENSMUST00000125716 3462 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Col3a1P08121 Sidt2-201ENSMUST00000038488 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Col3a1P08121 Nr2e1-201ENSMUST00000019938 3285 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Col3a1P08121 Pelp1-201ENSMUST00000019065 3435 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Col3a1P08121 Amhr2-201ENSMUST00000023809 1938 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Col3a1P08121 Eomes-201ENSMUST00000035020 3560 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
Col3a1P08121 Sh3bp5-202ENSMUST00000100730 2633 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Col3a1P08121 Papd5-202ENSMUST00000118952 4597 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Col3a1P08121 Dctn4-202ENSMUST00000223590 1530 ntBASIC16.39■□□□□ 0.21
Col3a1P08121 Flrt2-202ENSMUST00000110117 3223 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Col3a1P08121 Scg2-201ENSMUST00000049972 2515 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
Col3a1P08121 Dhx36-201ENSMUST00000029336 5620 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Col3a1P08121 Ubqln1-201ENSMUST00000058735 3686 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Col3a1P08121 Cox16-202ENSMUST00000110340 668 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Col3a1P08121 1700049J03Rik-201ENSMUST00000011196 421 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Col3a1P08121 Rasgrp2-207ENSMUST00000113475 573 ntTSL 5 BASIC16.39■□□□□ 0.21
Col3a1P08121 Gm14350-201ENSMUST00000116642 640 ntBASIC16.39■□□□□ 0.21
Col3a1P08121 Gm12384-201ENSMUST00000119228 919 ntBASIC16.39■□□□□ 0.21
Col3a1P08121 Myadml2os-201ENSMUST00000126642 1044 ntTSL 5 BASIC16.39■□□□□ 0.21
Col3a1P08121 9330198N18Rik-201ENSMUST00000146702 1247 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Col3a1P08121 Rwdd3-209ENSMUST00000170781 1111 ntTSL 5 BASIC16.39■□□□□ 0.21
Col3a1P08121 C87198-201ENSMUST00000173553 1045 ntTSL 3 BASIC16.39■□□□□ 0.21
Col3a1P08121 Pyy-204ENSMUST00000177304 551 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
Col3a1P08121 1600014C23Rik-201ENSMUST00000178179 518 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Col3a1P08121 Gm20033-203ENSMUST00000180912 796 ntTSL 5 BASIC16.39■□□□□ 0.21
Col3a1P08121 Gabarapl1-204ENSMUST00000204956 539 ntAPPRIS P1 TSL 3 BASIC16.39■□□□□ 0.21
Col3a1P08121 Gm36198-201ENSMUST00000217490 416 ntTSL 3 BASIC16.39■□□□□ 0.21
Col3a1P08121 Cox7a2-201ENSMUST00000034881 659 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Col3a1P08121 Alkbh3-201ENSMUST00000040005 1228 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Col3a1P08121 Dnm1-205ENSMUST00000113365 3257 ntAPPRIS ALT1 TSL 5 BASIC16.39■□□□□ 0.21
Col3a1P08121 G6pc3-201ENSMUST00000070334 1404 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Col3a1P08121 Gm16029-201ENSMUST00000161643 2427 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Col3a1P08121 Atxn7l1-202ENSMUST00000090597 2563 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Col3a1P08121 Gm17705-201ENSMUST00000172285 1555 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Col3a1P08121 Mapk8ip3-205ENSMUST00000119115 4173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Retrieved 100 of 76,532 protein–RNA pairs in 37.6 ms