Protein–RNA interactions for Protein: Q99MT2

Msh4, MutS protein homolog 4, mousemouse

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh4Q99MT2 Gm7030-203ENSMUST00000173322 913 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Msh4Q99MT2 Gm36536-201ENSMUST00000194241 959 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Msh4Q99MT2 Gm33337-201ENSMUST00000219594 228 ntTSL 3 BASIC13.61□□□□□ -0.23
Msh4Q99MT2 4930408O17Rik-202ENSMUST00000222624 1131 ntTSL 5 BASIC13.61□□□□□ -0.23
Msh4Q99MT2 AC090659.2-201ENSMUST00000225378 1186 ntBASIC13.61□□□□□ -0.23
Msh4Q99MT2 Dkkl1-201ENSMUST00000033057 1149 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Msh4Q99MT2 Gm7030-201ENSMUST00000046131 913 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
Msh4Q99MT2 Rhox9-201ENSMUST00000089062 882 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Msh4Q99MT2 Myh7-201ENSMUST00000102803 6135 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Msh4Q99MT2 4930425O10Rik-201ENSMUST00000197761 1418 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Msh4Q99MT2 Tm9sf1-201ENSMUST00000002391 2382 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Msh4Q99MT2 Gcsh-201ENSMUST00000040484 1443 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Msh4Q99MT2 R3hcc1-202ENSMUST00000121142 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Msh4Q99MT2 Dnajc22-201ENSMUST00000061295 1564 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Msh4Q99MT2 Aldh1a2-201ENSMUST00000034723 2264 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Msh4Q99MT2 Gpt-201ENSMUST00000023203 1749 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Msh4Q99MT2 Shc4-203ENSMUST00000110480 3671 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Msh4Q99MT2 Fnbp1-209ENSMUST00000113562 4515 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Msh4Q99MT2 Mob3c-201ENSMUST00000030477 2884 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Msh4Q99MT2 B3gnt8-201ENSMUST00000076034 1463 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Msh4Q99MT2 Rhobtb1-210ENSMUST00000167384 2331 ntTSL 5 BASIC13.61□□□□□ -0.23
Msh4Q99MT2 Gm9252-201ENSMUST00000172364 1602 ntBASIC13.61□□□□□ -0.23
Msh4Q99MT2 Spryd3-203ENSMUST00000154032 2456 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
Msh4Q99MT2 Arl11-202ENSMUST00000224727 2095 ntAPPRIS P1 BASIC13.6□□□□□ -0.23
Msh4Q99MT2 Kcnh2-201ENSMUST00000036092 4221 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Msh4Q99MT2 Elk3-201ENSMUST00000008542 4212 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Msh4Q99MT2 Prss23-201ENSMUST00000041761 3228 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Msh4Q99MT2 Hectd1-201ENSMUST00000042052 8988 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
Msh4Q99MT2 Cant1-202ENSMUST00000092378 2995 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Msh4Q99MT2 Catsper4-204ENSMUST00000169381 1506 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Msh4Q99MT2 Mpped1-203ENSMUST00000109470 3281 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Msh4Q99MT2 Wdr70-201ENSMUST00000045766 2126 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Msh4Q99MT2 Ash2l-201ENSMUST00000068892 3307 ntAPPRIS P4 TSL 1 (best) BASIC13.6□□□□□ -0.23
Msh4Q99MT2 Scyl3-201ENSMUST00000027876 4368 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
Msh4Q99MT2 Mrto4-202ENSMUST00000102503 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
Msh4Q99MT2 Gm24543-201ENSMUST00000103867 82 ntBASIC13.6□□□□□ -0.23
Msh4Q99MT2 Haghl-203ENSMUST00000133071 1128 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Msh4Q99MT2 Gm15384-201ENSMUST00000138832 486 ntTSL 5 BASIC13.6□□□□□ -0.23
Msh4Q99MT2 Cend1-204ENSMUST00000164387 1206 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Msh4Q99MT2 Gm26513-201ENSMUST00000181802 2489 ntBASIC13.6□□□□□ -0.23
Msh4Q99MT2 Gm27533-201ENSMUST00000183800 152 ntBASIC13.6□□□□□ -0.23
Msh4Q99MT2 Gm28237-202ENSMUST00000189477 748 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Msh4Q99MT2 Mir124-2hg-206ENSMUST00000189754 525 ntTSL 3 BASIC13.6□□□□□ -0.23
Msh4Q99MT2 Gm30191-201ENSMUST00000205501 647 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
Msh4Q99MT2 Srsf10-202ENSMUST00000097844 3055 ntAPPRIS ALT1 TSL 2 BASIC13.6□□□□□ -0.23
Msh4Q99MT2 Tbc1d5-205ENSMUST00000224528 4764 ntAPPRIS ALT2 BASIC13.6□□□□□ -0.23
Msh4Q99MT2 Spock1-205ENSMUST00000187852 3113 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Msh4Q99MT2 Hoxaas3-202ENSMUST00000136806 2207 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Msh4Q99MT2 Cd72-202ENSMUST00000098104 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
Msh4Q99MT2 Uba3-201ENSMUST00000089287 2257 ntAPPRIS P4 TSL 1 (best) BASIC13.6□□□□□ -0.23
Msh4Q99MT2 Tpd52-203ENSMUST00000091355 3081 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Msh4Q99MT2 Sytl1-201ENSMUST00000030674 1951 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Msh4Q99MT2 Miip-201ENSMUST00000030886 1813 ntAPPRIS P2 TSL 1 (best) BASIC13.6□□□□□ -0.23
Msh4Q99MT2 Slc9a3r2-202ENSMUST00000019684 1688 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Msh4Q99MT2 Pam-201ENSMUST00000058762 4095 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
Msh4Q99MT2 Hsph1-205ENSMUST00000201452 3140 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Msh4Q99MT2 Dnajb1-201ENSMUST00000005620 2996 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Msh4Q99MT2 Cdca5-201ENSMUST00000025704 2024 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Msh4Q99MT2 Rap1gap2-202ENSMUST00000102521 6565 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
Msh4Q99MT2 Neu2-203ENSMUST00000164128 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
Msh4Q99MT2 Zfp566-201ENSMUST00000088785 1709 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Msh4Q99MT2 Tbx3-201ENSMUST00000018748 4856 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Msh4Q99MT2 Ank3-223ENSMUST00000182557 1569 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Msh4Q99MT2 Etnk2-201ENSMUST00000129213 2074 ntAPPRIS ALT2 TSL 2 BASIC13.59□□□□□ -0.23
Msh4Q99MT2 4632404H12Rik-201ENSMUST00000038450 2791 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Msh4Q99MT2 P2rx3-202ENSMUST00000111613 1764 ntAPPRIS ALT1 TSL 5 BASIC13.59□□□□□ -0.23
Msh4Q99MT2 Trim27-206ENSMUST00000222544 4312 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
Msh4Q99MT2 Orai3-202ENSMUST00000118865 768 ntTSL 3 BASIC13.59□□□□□ -0.23
Msh4Q99MT2 Pkig-209ENSMUST00000164399 983 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
Msh4Q99MT2 Gpx4-207ENSMUST00000183037 735 ntTSL 2 BASIC13.59□□□□□ -0.23
Msh4Q99MT2 Gm38182-203ENSMUST00000192984 993 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Msh4Q99MT2 Pcdhgc5-204ENSMUST00000193941 593 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Msh4Q99MT2 Syce1l-201ENSMUST00000034219 896 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
Msh4Q99MT2 Apobec2-201ENSMUST00000046549 1218 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Msh4Q99MT2 Syce1l-202ENSMUST00000095173 791 ntAPPRIS P4 TSL 1 (best) BASIC13.59□□□□□ -0.23
Msh4Q99MT2 Rsu1-202ENSMUST00000114791 1604 ntTSL 5 BASIC13.59□□□□□ -0.23
Msh4Q99MT2 Ywhag-205ENSMUST00000198270 1610 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
Msh4Q99MT2 Nos1ap-202ENSMUST00000160456 3022 ntAPPRIS P2 TSL 5 BASIC13.59□□□□□ -0.23
Msh4Q99MT2 Tfe3-211ENSMUST00000137467 3390 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Msh4Q99MT2 Rpa2-201ENSMUST00000102561 1813 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Msh4Q99MT2 Add3-202ENSMUST00000050096 4488 ntAPPRIS ALT1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Msh4Q99MT2 Asxl1-201ENSMUST00000109790 6968 ntAPPRIS P2 TSL 5 BASIC13.59□□□□□ -0.23
Msh4Q99MT2 Arpc4-203ENSMUST00000203578 1323 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Msh4Q99MT2 Zdhhc19-201ENSMUST00000064192 1323 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Msh4Q99MT2 Cd3eap-201ENSMUST00000047036 2239 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Msh4Q99MT2 Cdkn2aip-201ENSMUST00000038738 3464 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
Msh4Q99MT2 Adgrg5-205ENSMUST00000166802 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
Msh4Q99MT2 Prrx1-204ENSMUST00000174397 6527 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Msh4Q99MT2 Plxdc1-203ENSMUST00000107565 2439 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Msh4Q99MT2 Ubqln2-201ENSMUST00000060714 3344 ntAPPRIS P1 BASIC13.59□□□□□ -0.23
Msh4Q99MT2 Kctd14-206ENSMUST00000206658 2339 ntAPPRIS P3 TSL 3 BASIC13.58□□□□□ -0.23
Msh4Q99MT2 Cyp1b1-201ENSMUST00000024894 5128 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
Msh4Q99MT2 Rrp1-201ENSMUST00000062678 1984 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Msh4Q99MT2 Ap2a1-202ENSMUST00000107857 3301 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Msh4Q99MT2 Gdf10-201ENSMUST00000168727 5210 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Msh4Q99MT2 Nxpe5-202ENSMUST00000159798 2568 ntAPPRIS P2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Msh4Q99MT2 Cpne6-202ENSMUST00000163767 2004 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
Msh4Q99MT2 Slc37a1-201ENSMUST00000165149 3354 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Msh4Q99MT2 Rbm33-201ENSMUST00000030920 3955 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Msh4Q99MT2 Ppdpf-202ENSMUST00000108841 689 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Retrieved 100 of 76,532 protein–RNA pairs in 49.1 ms