Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Gm29705-201ENSMUST00000212598 474 ntBASIC16.45■□□□□ 0.22
Col3a1P08121 AC140451.2-201ENSMUST00000228030 664 ntBASIC16.45■□□□□ 0.22
Col3a1P08121 Tpd52-204ENSMUST00000094381 1074 ntTSL 3 BASIC16.45■□□□□ 0.22
Col3a1P08121 Gm28756-202ENSMUST00000209405 2461 ntTSL 5 BASIC16.45■□□□□ 0.22
Col3a1P08121 Tmem198b-201ENSMUST00000051011 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Col3a1P08121 Gm15544-201ENSMUST00000118776 1531 ntBASIC16.45■□□□□ 0.22
Col3a1P08121 Ociad1-201ENSMUST00000031038 1523 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Col3a1P08121 Dnm1l-201ENSMUST00000023477 4017 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Col3a1P08121 Ptpro-203ENSMUST00000167679 5096 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Col3a1P08121 Rasgrp2-208ENSMUST00000113476 2296 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
Col3a1P08121 Cbln4-201ENSMUST00000087950 2902 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Col3a1P08121 Retreg3-201ENSMUST00000017946 3165 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Col3a1P08121 Olfr317-203ENSMUST00000216196 2781 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
Col3a1P08121 N6amt1-203ENSMUST00000118310 1700 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Col3a1P08121 Psmd8-207ENSMUST00000209034 1983 ntTSL 2 BASIC16.45■□□□□ 0.22
Col3a1P08121 2010300F17Rik-202ENSMUST00000181758 2493 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Col3a1P08121 Ttyh2-201ENSMUST00000045779 3486 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Col3a1P08121 Hic1-201ENSMUST00000055619 3497 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Col3a1P08121 AC139350.1-201ENSMUST00000227064 1594 ntBASIC16.44■□□□□ 0.22
Col3a1P08121 Dimt1-201ENSMUST00000022203 2051 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Col3a1P08121 Slc41a3-201ENSMUST00000032177 2324 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Col3a1P08121 Mageb10-ps-201ENSMUST00000119697 1407 ntBASIC16.44■□□□□ 0.22
Col3a1P08121 Sostdc1-201ENSMUST00000041407 1781 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Col3a1P08121 Smim5-201ENSMUST00000131566 700 ntTSL 2 BASIC16.44■□□□□ 0.22
Col3a1P08121 Ecscr-204ENSMUST00000133064 1055 ntAPPRIS ALT2 TSL 2 BASIC16.44■□□□□ 0.22
Col3a1P08121 Drap1-210ENSMUST00000148219 727 ntTSL 3 BASIC16.44■□□□□ 0.22
Col3a1P08121 Ssr4-208ENSMUST00000166518 800 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Col3a1P08121 Neurl3-202ENSMUST00000188666 1206 ntTSL 5 BASIC16.44■□□□□ 0.22
Col3a1P08121 Gm9257-201ENSMUST00000221254 232 ntBASIC16.44■□□□□ 0.22
Col3a1P08121 Ecscr-201ENSMUST00000097618 1114 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Col3a1P08121 Dcp1b-202ENSMUST00000112777 3313 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Col3a1P08121 Slc9a3-201ENSMUST00000036208 2490 ntAPPRIS P2 TSL 2 BASIC16.44■□□□□ 0.22
Col3a1P08121 Gpr19-208ENSMUST00000165392 1643 ntTSL 3 BASIC16.44■□□□□ 0.22
Col3a1P08121 Gpr19-202ENSMUST00000066107 1647 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Col3a1P08121 Atrip-201ENSMUST00000045011 2572 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Col3a1P08121 Mapk7-202ENSMUST00000101085 3254 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Col3a1P08121 Mpped1-201ENSMUST00000046168 3265 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Col3a1P08121 Acox1-201ENSMUST00000066587 3987 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
Col3a1P08121 Dcaf5-201ENSMUST00000054145 5706 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Col3a1P08121 Cant1-203ENSMUST00000106287 1476 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Col3a1P08121 Osbpl9-202ENSMUST00000084366 3134 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Col3a1P08121 Slc25a22-202ENSMUST00000106006 2277 ntTSL 5 BASIC16.44■□□□□ 0.22
Col3a1P08121 Pef1-201ENSMUST00000030563 1551 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Col3a1P08121 Etv6-201ENSMUST00000081028 5545 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
Col3a1P08121 Srpx-201ENSMUST00000044789 2477 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Col3a1P08121 Iqgap2-201ENSMUST00000068603 5771 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Col3a1P08121 Cpeb4-201ENSMUST00000020543 2312 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Col3a1P08121 Lrp11-203ENSMUST00000130590 3220 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Col3a1P08121 4933436I20Rik-202ENSMUST00000190615 1509 ntTSL 5 BASIC16.43■□□□□ 0.22
Col3a1P08121 Parg-201ENSMUST00000022470 4413 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Col3a1P08121 Fermt2-201ENSMUST00000045905 3293 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Col3a1P08121 Cabp5-202ENSMUST00000117400 1258 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Col3a1P08121 Gm11400-201ENSMUST00000120853 1214 ntBASIC16.43■□□□□ 0.22
Col3a1P08121 Sbk3-201ENSMUST00000133272 1086 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
Col3a1P08121 Cox16-206ENSMUST00000168463 431 ntTSL 2 BASIC16.43■□□□□ 0.22
Col3a1P08121 Gm37933-201ENSMUST00000193964 981 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Col3a1P08121 Gm36264-202ENSMUST00000221989 1142 ntTSL 5 BASIC16.43■□□□□ 0.22
Col3a1P08121 Mal-201ENSMUST00000028853 486 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Col3a1P08121 4933434E20Rik-202ENSMUST00000029552 1080 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Col3a1P08121 Tmem54-202ENSMUST00000030577 988 ntAPPRIS ALT2 TSL 3 BASIC16.43■□□□□ 0.22
Col3a1P08121 Cep126-201ENSMUST00000037397 3819 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Col3a1P08121 4921530L21Rik-201ENSMUST00000045892 1161 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Col3a1P08121 Gm5421-201ENSMUST00000181698 2354 ntBASIC16.43■□□□□ 0.22
Col3a1P08121 Gm26604-201ENSMUST00000180926 1766 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Col3a1P08121 Eno1b-201ENSMUST00000076155 1757 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Col3a1P08121 Ccnj-203ENSMUST00000120057 3783 ntTSL 5 BASIC16.43■□□□□ 0.22
Col3a1P08121 Gm36445-201ENSMUST00000209344 1432 ntTSL 5 BASIC16.43■□□□□ 0.22
Col3a1P08121 Fam169b-201ENSMUST00000098378 2776 ntTSL 5 BASIC16.43■□□□□ 0.22
Col3a1P08121 Sybu-209ENSMUST00000228639 4113 ntBASIC16.43■□□□□ 0.22
Col3a1P08121 2810474O19Rik-201ENSMUST00000046689 6066 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Col3a1P08121 Mindy3-201ENSMUST00000028105 2344 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Col3a1P08121 Gbe1-207ENSMUST00000171132 3303 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Col3a1P08121 Zdhhc4-208ENSMUST00000161915 1216 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
Col3a1P08121 Ccdc70-201ENSMUST00000017193 1054 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Col3a1P08121 1700065I16Rik-202ENSMUST00000185477 813 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Col3a1P08121 Dnm3os-203ENSMUST00000185878 557 ntTSL 5 BASIC16.42■□□□□ 0.22
Col3a1P08121 Gm42693-201ENSMUST00000196779 631 ntBASIC16.42■□□□□ 0.22
Col3a1P08121 Gm45564-201ENSMUST00000210460 530 ntTSL 5 BASIC16.42■□□□□ 0.22
Col3a1P08121 Rpl10l-201ENSMUST00000081908 1023 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
Col3a1P08121 Ifi35-201ENSMUST00000010502 1362 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Col3a1P08121 Gm13055-201ENSMUST00000127875 1961 ntTSL 5 BASIC16.42■□□□□ 0.22
Col3a1P08121 Tspan12-202ENSMUST00000120965 2157 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Col3a1P08121 Haus5-201ENSMUST00000019697 2187 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Col3a1P08121 Klf15-203ENSMUST00000203039 2482 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
Col3a1P08121 Lsm14b-202ENSMUST00000058764 2566 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Col3a1P08121 Bbs7-203ENSMUST00000108156 2687 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Col3a1P08121 Cdsn-201ENSMUST00000044804 2678 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Col3a1P08121 1700052K11Rik-201ENSMUST00000190120 3708 ntBASIC16.42■□□□□ 0.22
Col3a1P08121 1700029J07Rik-201ENSMUST00000095323 2740 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Col3a1P08121 Msl1-201ENSMUST00000037915 4593 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Col3a1P08121 Vax2os-201ENSMUST00000123402 1435 ntTSL 5 BASIC16.42■□□□□ 0.22
Col3a1P08121 Rps13-203ENSMUST00000205490 1317 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Col3a1P08121 Col11a2-203ENSMUST00000114255 5722 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
Col3a1P08121 Unc13b-203ENSMUST00000107953 5034 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
Col3a1P08121 Sphk2-201ENSMUST00000072836 2968 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Col3a1P08121 Gm29455-201ENSMUST00000186504 2659 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Col3a1P08121 Mbp-202ENSMUST00000062446 2186 ntAPPRIS P4 TSL 1 (best) BASIC16.42■□□□□ 0.22
Col3a1P08121 Fgfr1op-202ENSMUST00000097419 3505 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Col3a1P08121 Stx5a-201ENSMUST00000010254 1780 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
Col3a1P08121 Tomm6os-201ENSMUST00000155812 2944 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Retrieved 100 of 76,532 protein–RNA pairs in 28.2 ms