Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Esm1-201ENSMUST00000038144 2097 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Hmgb3O54879 Gpr108-201ENSMUST00000005975 2095 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Hmgb3O54879 Togaram2-205ENSMUST00000153445 3302 ntAPPRIS P1 TSL 5 BASIC11.54□□□□□ -0.56
Hmgb3O54879 Spata21-201ENSMUST00000051907 2526 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Hmgb3O54879 Pja1-202ENSMUST00000113790 2108 ntAPPRIS ALT2 TSL 2 BASIC11.54□□□□□ -0.56
Hmgb3O54879 Usp33-209ENSMUST00000197748 4183 ntAPPRIS P3 TSL 1 (best) BASIC11.54□□□□□ -0.56
Hmgb3O54879 Gpsm3-201ENSMUST00000038244 1343 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Hmgb3O54879 Slc8b1-204ENSMUST00000111890 2775 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Hmgb3O54879 A830018L16Rik-202ENSMUST00000135014 6451 ntAPPRIS ALT2 TSL 1 (best) BASIC11.54□□□□□ -0.56
Hmgb3O54879 Mrpl58-209ENSMUST00000153983 2596 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Hmgb3O54879 Sirpa-214ENSMUST00000179001 3812 ntAPPRIS P3 TSL 5 BASIC11.54□□□□□ -0.56
Hmgb3O54879 Cep250-204ENSMUST00000109619 7977 ntAPPRIS P4 TSL 5 BASIC11.54□□□□□ -0.56
Hmgb3O54879 Csk-209ENSMUST00000217314 2162 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Hmgb3O54879 Sytl1-201ENSMUST00000030674 1951 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Hmgb3O54879 Nol10-201ENSMUST00000046011 3021 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Hmgb3O54879 CT025610.1-201ENSMUST00000224552 1786 ntBASIC11.54□□□□□ -0.56
Hmgb3O54879 Ubr7-201ENSMUST00000046404 3261 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Hmgb3O54879 Hivep1-201ENSMUST00000060148 8753 ntAPPRIS P1 TSL 5 BASIC11.54□□□□□ -0.56
Hmgb3O54879 Gm13288-201ENSMUST00000094977 2850 ntAPPRIS P1 BASIC11.53□□□□□ -0.56
Hmgb3O54879 Alx1-205ENSMUST00000218282 2012 ntAPPRIS P1 TSL 5 BASIC11.53□□□□□ -0.56
Hmgb3O54879 Map4k2-201ENSMUST00000025897 4644 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Hmgb3O54879 Krt26-201ENSMUST00000100482 2471 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Hmgb3O54879 4930556M19Rik-201ENSMUST00000180604 2468 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Hmgb3O54879 Mpzl2-201ENSMUST00000034600 3107 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Hmgb3O54879 Gm37644-201ENSMUST00000192190 2270 ntBASIC11.53□□□□□ -0.56
Hmgb3O54879 Ric8b-202ENSMUST00000095385 2909 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Hmgb3O54879 Coro6-201ENSMUST00000021190 1418 ntAPPRIS P5 TSL 1 (best) BASIC11.53□□□□□ -0.56
Hmgb3O54879 Dusp23-201ENSMUST00000027826 1410 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Hmgb3O54879 Kcnj8-202ENSMUST00000203945 2548 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Hmgb3O54879 Chrdl1-203ENSMUST00000112878 4050 ntAPPRIS ALT2 TSL 5 BASIC11.53□□□□□ -0.56
Hmgb3O54879 Ap5z1-202ENSMUST00000196055 2965 ntAPPRIS ALT2 TSL 1 (best) BASIC11.53□□□□□ -0.56
Hmgb3O54879 Guca1b-201ENSMUST00000024774 1668 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Hmgb3O54879 Cep68-201ENSMUST00000050611 4804 ntAPPRIS P2 TSL 1 (best) BASIC11.53□□□□□ -0.56
Hmgb3O54879 Otof-201ENSMUST00000074171 7129 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Hmgb3O54879 Wdr5-201ENSMUST00000113952 2890 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Hmgb3O54879 Espn-213ENSMUST00000105659 3595 ntAPPRIS ALT2 TSL 5 BASIC11.53□□□□□ -0.56
Hmgb3O54879 Nat9-203ENSMUST00000103040 1204 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Hmgb3O54879 Nat9-204ENSMUST00000103041 953 ntAPPRIS P1 TSL 5 BASIC11.53□□□□□ -0.56
Hmgb3O54879 Nme1-202ENSMUST00000107844 452 ntTSL 3 BASIC11.53□□□□□ -0.56
Hmgb3O54879 Tpm2-203ENSMUST00000107914 1164 ntAPPRIS ALT1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Hmgb3O54879 Tmem176a-202ENSMUST00000168406 1086 ntAPPRIS P1 TSL 3 BASIC11.53□□□□□ -0.56
Hmgb3O54879 Smarca5-ps-202ENSMUST00000171805 1284 ntBASIC11.53□□□□□ -0.56
Hmgb3O54879 Gm8584-201ENSMUST00000171982 758 ntBASIC11.53□□□□□ -0.56
Hmgb3O54879 Gm5914-202ENSMUST00000182863 375 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Hmgb3O54879 4930500L23Rik-201ENSMUST00000198000 747 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Hmgb3O54879 5830454E08Rik-202ENSMUST00000213974 744 ntBASIC11.53□□□□□ -0.56
Hmgb3O54879 Gm18246-201ENSMUST00000221023 728 ntBASIC11.53□□□□□ -0.56
Hmgb3O54879 Kcnk16-201ENSMUST00000024155 916 ntAPPRIS P1 TSL 5 BASIC11.53□□□□□ -0.56
Hmgb3O54879 Lce3f-201ENSMUST00000090863 611 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Hmgb3O54879 Gm2155-201ENSMUST00000181581 1974 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Hmgb3O54879 Otop2-202ENSMUST00000106544 2220 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Hmgb3O54879 Shmt2-206ENSMUST00000219239 2238 ntAPPRIS ALT1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Hmgb3O54879 Actn4-211ENSMUST00000217157 3530 ntTSL 5 BASIC11.53□□□□□ -0.56
Hmgb3O54879 Rpa2-201ENSMUST00000102561 1813 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Hmgb3O54879 Myh6-205ENSMUST00000226297 6008 ntAPPRIS P1 BASIC11.53□□□□□ -0.56
Hmgb3O54879 Apbb2-216ENSMUST00000162366 6540 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Hmgb3O54879 Bag6-203ENSMUST00000172571 3599 ntTSL 5 BASIC11.53□□□□□ -0.56
Hmgb3O54879 Acbd5-208ENSMUST00000226571 3802 ntAPPRIS ALT2 BASIC11.53□□□□□ -0.56
Hmgb3O54879 Brsk2-204ENSMUST00000105989 2149 ntAPPRIS P4 TSL 5 BASIC11.53□□□□□ -0.56
Hmgb3O54879 Rnf10-202ENSMUST00000112096 3112 ntAPPRIS P3 TSL 1 (best) BASIC11.53□□□□□ -0.56
Hmgb3O54879 Flot1-209ENSMUST00000174080 1383 ntTSL 5 BASIC11.53□□□□□ -0.56
Hmgb3O54879 Galns-203ENSMUST00000212319 2111 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Hmgb3O54879 Klf12-201ENSMUST00000097079 1856 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Hmgb3O54879 Nynrin-201ENSMUST00000100529 6990 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Hmgb3O54879 Megf8-201ENSMUST00000128119 10040 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Hmgb3O54879 Gm11738-201ENSMUST00000134069 2158 ntTSL 1 (best) BASIC11.52□□□□□ -0.56
Hmgb3O54879 Gm14168-201ENSMUST00000144818 2197 ntTSL 1 (best) BASIC11.52□□□□□ -0.56
Hmgb3O54879 Ccdc151-201ENSMUST00000044926 2197 ntAPPRIS P3 TSL 1 (best) BASIC11.52□□□□□ -0.56
Hmgb3O54879 AI480526-202ENSMUST00000159637 1697 ntTSL 1 (best) BASIC11.52□□□□□ -0.56
Hmgb3O54879 Cadm2-202ENSMUST00000120594 3248 ntAPPRIS ALT1 TSL 5 BASIC11.52□□□□□ -0.56
Hmgb3O54879 Fbln2-201ENSMUST00000041544 4786 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
Hmgb3O54879 Upk1a-201ENSMUST00000006476 1421 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
Hmgb3O54879 Aspg-201ENSMUST00000079400 2722 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
Hmgb3O54879 Tex44-201ENSMUST00000046004 1724 ntAPPRIS P1 BASIC11.52□□□□□ -0.56
Hmgb3O54879 Pla2g5-204ENSMUST00000102513 2289 ntAPPRIS P1 TSL 5 BASIC11.52□□□□□ -0.56
Hmgb3O54879 H2-T23-201ENSMUST00000102678 1472 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
Hmgb3O54879 2700049A03Rik-203ENSMUST00000149564 5763 ntAPPRIS P4 TSL 1 (best) BASIC11.52□□□□□ -0.56
Hmgb3O54879 Iqck-202ENSMUST00000106547 2026 ntAPPRIS P2 TSL 5 BASIC11.52□□□□□ -0.56
Hmgb3O54879 Cox16-201ENSMUST00000002757 2007 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
Hmgb3O54879 Scube1-203ENSMUST00000076060 3913 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.56
Hmgb3O54879 Ptn-202ENSMUST00000201321 2558 ntTSL 1 (best) BASIC11.52□□□□□ -0.56
Hmgb3O54879 Ero1lb-201ENSMUST00000071973 4239 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
Hmgb3O54879 Gsdmd-201ENSMUST00000023238 1776 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Hmgb3O54879 Ilvbl-203ENSMUST00000218215 2331 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Hmgb3O54879 Inpp5a-202ENSMUST00000097975 2301 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Hmgb3O54879 Rnf214-201ENSMUST00000058720 3964 ntAPPRIS P3 TSL 1 (best) BASIC11.52□□□□□ -0.57
Hmgb3O54879 Als2cl-203ENSMUST00000130386 5056 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Hmgb3O54879 Cntnap4-201ENSMUST00000034225 4848 ntAPPRIS P2 TSL 1 (best) BASIC11.52□□□□□ -0.57
Hmgb3O54879 Lsp1-203ENSMUST00000105966 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.57
Hmgb3O54879 Tnfsf13-202ENSMUST00000108648 1503 ntAPPRIS ALT2 TSL 5 BASIC11.52□□□□□ -0.57
Hmgb3O54879 Olah-201ENSMUST00000027955 1533 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Hmgb3O54879 A230077H06Rik-201ENSMUST00000188579 2918 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Hmgb3O54879 Ppp1r2-202ENSMUST00000115233 958 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Hmgb3O54879 Pgam1-ps1-201ENSMUST00000119107 749 ntBASIC11.52□□□□□ -0.57
Hmgb3O54879 Gm14042-201ENSMUST00000120139 833 ntBASIC11.52□□□□□ -0.57
Hmgb3O54879 Ramp2-204ENSMUST00000129680 1178 ntAPPRIS P2 TSL 1 (best) BASIC11.52□□□□□ -0.57
Hmgb3O54879 Gm7284-201ENSMUST00000131667 944 ntBASIC11.52□□□□□ -0.57
Hmgb3O54879 Cdpf1-204ENSMUST00000144067 761 ntAPPRIS P1 TSL 2 BASIC11.52□□□□□ -0.57
Hmgb3O54879 2210408F21Rik-212ENSMUST00000152157 490 ntTSL 2 BASIC11.52□□□□□ -0.57
Hmgb3O54879 Tmprss5-204ENSMUST00000167095 1146 ntAPPRIS ALT2 TSL 5 BASIC11.52□□□□□ -0.57
Retrieved 100 of 76,532 protein–RNA pairs in 60.2 ms