Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Lims1-203ENSMUST00000105468 1205 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Usp40Q8BWR4 Gm13226-201ENSMUST00000117838 404 ntBASIC19.07■□□□□ 0.64
Usp40Q8BWR4 Surf2-201ENSMUST00000015017 1203 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Usp40Q8BWR4 9230020A06Rik-204ENSMUST00000215201 1116 ntTSL 5 BASIC19.07■□□□□ 0.64
Usp40Q8BWR4 Papd7-201ENSMUST00000044081 3994 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
Usp40Q8BWR4 Mcrs1-201ENSMUST00000041190 1915 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Usp40Q8BWR4 Gm12404-201ENSMUST00000122839 1661 ntTSL 5 BASIC19.07■□□□□ 0.64
Usp40Q8BWR4 Tbp-202ENSMUST00000117593 2067 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Usp40Q8BWR4 Gata4-202ENSMUST00000118022 3374 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
Usp40Q8BWR4 Ralgds-201ENSMUST00000028170 3590 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
Usp40Q8BWR4 Nkx6-1-201ENSMUST00000044125 3138 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Usp40Q8BWR4 Zfp865-201ENSMUST00000076251 7503 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Usp40Q8BWR4 Rbm15-201ENSMUST00000061772 4343 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Usp40Q8BWR4 Mfsd6-201ENSMUST00000087701 3493 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
Usp40Q8BWR4 Mapk8ip2-201ENSMUST00000023291 5558 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Usp40Q8BWR4 Kmt5c-203ENSMUST00000108583 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Usp40Q8BWR4 Casp7-201ENSMUST00000026062 2350 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Usp40Q8BWR4 Ldha-214ENSMUST00000210815 1535 ntTSL 5 BASIC19.06■□□□□ 0.64
Usp40Q8BWR4 Gm8337-201ENSMUST00000187358 1938 ntBASIC19.06■□□□□ 0.64
Usp40Q8BWR4 Micall2-201ENSMUST00000044642 3346 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Usp40Q8BWR4 Gprin1-201ENSMUST00000099506 4141 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Usp40Q8BWR4 Dnmt3b-201ENSMUST00000056495 4318 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
Usp40Q8BWR4 Fbxo21-201ENSMUST00000035579 3883 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
Usp40Q8BWR4 Hsph1-209ENSMUST00000202089 3054 ntTSL 5 BASIC19.06■□□□□ 0.64
Usp40Q8BWR4 Tpk1-201ENSMUST00000067888 2671 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Usp40Q8BWR4 Itgb4-201ENSMUST00000021107 6014 ntAPPRIS P2 TSL 5 BASIC19.06■□□□□ 0.64
Usp40Q8BWR4 Phgdh-201ENSMUST00000065793 1893 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Usp40Q8BWR4 Ifi47-204ENSMUST00000213728 1678 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
Usp40Q8BWR4 Selenoh-202ENSMUST00000102647 654 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
Usp40Q8BWR4 1700061E18Rik-201ENSMUST00000154159 588 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Usp40Q8BWR4 C430014B12Rik-201ENSMUST00000181720 1001 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Usp40Q8BWR4 2610306M01Rik-201ENSMUST00000185414 1042 ntBASIC19.06■□□□□ 0.64
Usp40Q8BWR4 Gm38671-201ENSMUST00000200573 130 ntBASIC19.06■□□□□ 0.64
Usp40Q8BWR4 Gm42550-201ENSMUST00000201553 960 ntBASIC19.06■□□□□ 0.64
Usp40Q8BWR4 Olfr142-201ENSMUST00000099752 918 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
Usp40Q8BWR4 4931428F04Rik-203ENSMUST00000212219 2044 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Usp40Q8BWR4 Jakmip1-201ENSMUST00000043794 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Usp40Q8BWR4 Sema4c-203ENSMUST00000191677 3779 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
Usp40Q8BWR4 Nap1l1-203ENSMUST00000217908 1350 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Usp40Q8BWR4 Acox3-204ENSMUST00000114238 2825 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
Usp40Q8BWR4 Usp33-202ENSMUST00000117492 3886 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Usp40Q8BWR4 Gm45133-201ENSMUST00000207548 2773 ntBASIC19.05■□□□□ 0.64
Usp40Q8BWR4 Dnajb14-201ENSMUST00000090178 9477 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Usp40Q8BWR4 Elavl3-201ENSMUST00000003501 5014 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Usp40Q8BWR4 Dr1-201ENSMUST00000031190 3085 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Usp40Q8BWR4 Oscar-202ENSMUST00000108645 1829 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Usp40Q8BWR4 Oscar-201ENSMUST00000039507 1823 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
Usp40Q8BWR4 Endov-203ENSMUST00000106245 5126 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Usp40Q8BWR4 Ankra2-208ENSMUST00000226100 1476 ntBASIC19.05■□□□□ 0.64
Usp40Q8BWR4 Tpd52l2-203ENSMUST00000108799 985 ntTSL 5 BASIC19.05■□□□□ 0.64
Usp40Q8BWR4 Ash2l-202ENSMUST00000110608 2134 ntTSL 5 BASIC19.05■□□□□ 0.64
Usp40Q8BWR4 Nmi-202ENSMUST00000112705 1130 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Usp40Q8BWR4 Gm2445-201ENSMUST00000182798 989 ntBASIC19.05■□□□□ 0.64
Usp40Q8BWR4 Gm37753-201ENSMUST00000192178 439 ntTSL 2 BASIC19.05■□□□□ 0.64
Usp40Q8BWR4 Gm38230-201ENSMUST00000193572 1159 ntBASIC19.05■□□□□ 0.64
Usp40Q8BWR4 Gm42303-201ENSMUST00000209960 1170 ntTSL 5 BASIC19.05■□□□□ 0.64
Usp40Q8BWR4 Gm867-202ENSMUST00000219979 714 ntAPPRIS P1 TSL 3 BASIC19.05■□□□□ 0.64
Usp40Q8BWR4 Taldo1-201ENSMUST00000026576 1229 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Usp40Q8BWR4 9330182L06Rik-202ENSMUST00000115348 3403 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Usp40Q8BWR4 Klhl26-202ENSMUST00000166976 2734 ntTSL 2 BASIC19.05■□□□□ 0.64
Usp40Q8BWR4 Aifm1-202ENSMUST00000114945 2221 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
Usp40Q8BWR4 Pcyox1l-201ENSMUST00000025472 2017 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Usp40Q8BWR4 Ppp2r2c-201ENSMUST00000031003 4088 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Usp40Q8BWR4 4933421O10Rik-201ENSMUST00000155691 3847 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Usp40Q8BWR4 Traf2-201ENSMUST00000028311 3044 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
Usp40Q8BWR4 Kctd12-202ENSMUST00000184744 6057 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
Usp40Q8BWR4 Vamp2-201ENSMUST00000021273 2205 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Usp40Q8BWR4 Fem1b-201ENSMUST00000034775 6785 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Usp40Q8BWR4 Tssc4-202ENSMUST00000105920 895 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Usp40Q8BWR4 Rai2-202ENSMUST00000112338 2165 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Usp40Q8BWR4 Gm24196-201ENSMUST00000179161 110 ntBASIC19.04■□□□□ 0.64
Usp40Q8BWR4 Gm29127-201ENSMUST00000188304 517 ntBASIC19.04■□□□□ 0.64
Usp40Q8BWR4 Gm44780-201ENSMUST00000205409 581 ntTSL 3 BASIC19.04■□□□□ 0.64
Usp40Q8BWR4 Gm45505-201ENSMUST00000210252 948 ntTSL 5 BASIC19.04■□□□□ 0.64
Usp40Q8BWR4 Gabra4-201ENSMUST00000031121 4108 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
Usp40Q8BWR4 Nr2e3-201ENSMUST00000034831 2037 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Usp40Q8BWR4 Tmem256-201ENSMUST00000094065 492 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Usp40Q8BWR4 Vegfa-202ENSMUST00000071648 3451 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
Usp40Q8BWR4 Fgf2-208ENSMUST00000200585 5973 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
Usp40Q8BWR4 Atrip-201ENSMUST00000045011 2572 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
Usp40Q8BWR4 Gm26565-201ENSMUST00000181642 1968 ntTSL 5 BASIC19.04■□□□□ 0.64
Usp40Q8BWR4 Vldlr-208ENSMUST00000172302 3855 ntAPPRIS ALT1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Usp40Q8BWR4 Cdadc1-201ENSMUST00000022555 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
Usp40Q8BWR4 Ppp1r18-204ENSMUST00000144382 2536 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
Usp40Q8BWR4 Col9a2-201ENSMUST00000030372 2924 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Usp40Q8BWR4 Prmt2-201ENSMUST00000020452 2016 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
Usp40Q8BWR4 Dkk1-201ENSMUST00000025803 2427 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Usp40Q8BWR4 Tnks-201ENSMUST00000033929 9163 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Usp40Q8BWR4 Trim24-203ENSMUST00000120428 3940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
Usp40Q8BWR4 Pltp-203ENSMUST00000109317 1575 ntTSL 5 BASIC19.03■□□□□ 0.64
Usp40Q8BWR4 Eif4g1-206ENSMUST00000115463 5378 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
Usp40Q8BWR4 6430548M08Rik-201ENSMUST00000034281 5564 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
Usp40Q8BWR4 Shisa5-203ENSMUST00000154184 1038 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Usp40Q8BWR4 Pcgf1-202ENSMUST00000165164 918 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Usp40Q8BWR4 Abhd14a-202ENSMUST00000171678 1262 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Usp40Q8BWR4 Psmc3ip-201ENSMUST00000019447 1291 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Usp40Q8BWR4 Nme2-201ENSMUST00000021217 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Usp40Q8BWR4 Gm18934-201ENSMUST00000216671 1044 ntBASIC19.03■□□□□ 0.64
Usp40Q8BWR4 Gm648-201ENSMUST00000081133 1040 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Usp40Q8BWR4 Armcx1-204ENSMUST00000113198 2085 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
Retrieved 100 of 76,532 protein–RNA pairs in 28.6 ms