Protein–RNA interactions for Protein: Q5NCC9

Trim58, E3 ubiquitin-protein ligase TRIM58, mousemouse

Predictions only

Length 485 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim58Q5NCC9 Ilkap-201ENSMUST00000027534 1368 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim58Q5NCC9 Loxl2-201ENSMUST00000022660 5316 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim58Q5NCC9 Abr-205ENSMUST00000108408 3534 ntTSL 5 BASIC17.67■□□□□ 0.42
Trim58Q5NCC9 Ppt2-209ENSMUST00000171121 1710 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
Trim58Q5NCC9 Nek7-201ENSMUST00000027642 3737 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Trim58Q5NCC9 Tcn2-204ENSMUST00000109990 1914 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim58Q5NCC9 Slc4a7-201ENSMUST00000057015 8132 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim58Q5NCC9 Rpl37rt-201ENSMUST00000100847 682 ntTSL 3 BASIC17.67■□□□□ 0.42
Trim58Q5NCC9 Mansc4-202ENSMUST00000123367 542 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
Trim58Q5NCC9 Gssos1-201ENSMUST00000142509 716 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Trim58Q5NCC9 Gm15458-201ENSMUST00000156950 709 ntTSL 5 BASIC17.67■□□□□ 0.42
Trim58Q5NCC9 Styxl1-207ENSMUST00000177559 1236 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
Trim58Q5NCC9 1700086L19Rik-202ENSMUST00000185822 1028 ntTSL 3 BASIC17.67■□□□□ 0.42
Trim58Q5NCC9 Ly6f-202ENSMUST00000189654 818 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
Trim58Q5NCC9 Gm37277-201ENSMUST00000194052 1111 ntBASIC17.67■□□□□ 0.42
Trim58Q5NCC9 Tmem86b-204ENSMUST00000206610 522 ntTSL 3 BASIC17.67■□□□□ 0.42
Trim58Q5NCC9 Tsfm-201ENSMUST00000040560 1206 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim58Q5NCC9 Rec114-201ENSMUST00000098674 883 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim58Q5NCC9 Camsap1-202ENSMUST00000114167 7981 ntAPPRIS P2 TSL 5 BASIC17.67■□□□□ 0.42
Trim58Q5NCC9 Cspg5-204ENSMUST00000197850 7868 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
Trim58Q5NCC9 Asb3-206ENSMUST00000203878 1813 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
Trim58Q5NCC9 Tfe3-201ENSMUST00000077680 3277 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim58Q5NCC9 Ubqln2-201ENSMUST00000060714 3344 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
Trim58Q5NCC9 Uba3-201ENSMUST00000089287 2257 ntAPPRIS P4 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim58Q5NCC9 Rab3a-202ENSMUST00000110090 1375 ntAPPRIS P1 TSL 3 BASIC17.66■□□□□ 0.42
Trim58Q5NCC9 Ubl4b-201ENSMUST00000052853 1387 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
Trim58Q5NCC9 Zfp977-201ENSMUST00000173283 1425 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
Trim58Q5NCC9 Rnpepl1-201ENSMUST00000027487 3337 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trim58Q5NCC9 Camkk2-201ENSMUST00000111668 4861 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trim58Q5NCC9 Chtop-206ENSMUST00000107344 2972 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Trim58Q5NCC9 Rad54l2-201ENSMUST00000046502 9305 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trim58Q5NCC9 Bri3bp-201ENSMUST00000049040 6473 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trim58Q5NCC9 Ace3-201ENSMUST00000190995 2214 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trim58Q5NCC9 Adam23-205ENSMUST00000114107 6110 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
Trim58Q5NCC9 E130317F20Rik-202ENSMUST00000217802 3420 ntBASIC17.66■□□□□ 0.42
Trim58Q5NCC9 Ninj2-202ENSMUST00000112711 853 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trim58Q5NCC9 Ppil3-202ENSMUST00000114345 1175 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Trim58Q5NCC9 Gm14701-201ENSMUST00000117156 348 ntBASIC17.66■□□□□ 0.42
Trim58Q5NCC9 Zfp715-201ENSMUST00000012796 907 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Trim58Q5NCC9 Nmi-205ENSMUST00000145481 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trim58Q5NCC9 Mroh1-217ENSMUST00000162319 1244 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
Trim58Q5NCC9 Ccdc24-209ENSMUST00000171052 891 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
Trim58Q5NCC9 Gm37117-201ENSMUST00000194238 589 ntTSL 5 BASIC17.66■□□□□ 0.42
Trim58Q5NCC9 Aif1-201ENSMUST00000025257 847 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
Trim58Q5NCC9 Ucn-201ENSMUST00000043475 504 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trim58Q5NCC9 Erp29-203ENSMUST00000130451 5204 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trim58Q5NCC9 Mboat2-201ENSMUST00000078902 2467 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
Trim58Q5NCC9 Pam-202ENSMUST00000097625 4102 ntAPPRIS P2 TSL 5 BASIC17.66■□□□□ 0.42
Trim58Q5NCC9 Myt1l-204ENSMUST00000218198 2735 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Trim58Q5NCC9 Ywhaq-201ENSMUST00000049531 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trim58Q5NCC9 Fgf17-202ENSMUST00000227123 1336 ntBASIC17.66■□□□□ 0.42
Trim58Q5NCC9 Rbm47-201ENSMUST00000094756 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trim58Q5NCC9 Pfkfb3-212ENSMUST00000170196 2163 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Trim58Q5NCC9 Ncbp1-201ENSMUST00000030014 3010 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trim58Q5NCC9 Myocd-202ENSMUST00000102635 4935 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trim58Q5NCC9 Kcnc2-201ENSMUST00000092175 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim58Q5NCC9 Rbak-201ENSMUST00000049861 3335 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim58Q5NCC9 Rreb1-202ENSMUST00000110237 4617 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Trim58Q5NCC9 Tcf3-205ENSMUST00000105341 2451 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
Trim58Q5NCC9 Lzts3-203ENSMUST00000110260 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim58Q5NCC9 Syt1-201ENSMUST00000064054 4745 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim58Q5NCC9 Peli3-202ENSMUST00000120475 2988 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Trim58Q5NCC9 Noct-203ENSMUST00000167780 2992 ntAPPRIS P2 TSL 5 BASIC17.65■□□□□ 0.42
Trim58Q5NCC9 Abhd3-202ENSMUST00000117726 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim58Q5NCC9 Arfgap1-203ENSMUST00000108860 2326 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim58Q5NCC9 Atp6ap1-201ENSMUST00000019231 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim58Q5NCC9 Rpl17-ps10-201ENSMUST00000119383 555 ntBASIC17.65■□□□□ 0.42
Trim58Q5NCC9 Rpl17-ps9-201ENSMUST00000119541 555 ntBASIC17.65■□□□□ 0.42
Trim58Q5NCC9 Rpl17-ps4-201ENSMUST00000120241 555 ntBASIC17.65■□□□□ 0.42
Trim58Q5NCC9 Med11-202ENSMUST00000151013 445 ntTSL 2 BASIC17.65■□□□□ 0.42
Trim58Q5NCC9 Iqcf1-202ENSMUST00000164965 523 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim58Q5NCC9 1190007I07Rik-204ENSMUST00000183416 637 ntTSL 2 BASIC17.65■□□□□ 0.42
Trim58Q5NCC9 Ighv1-51-201ENSMUST00000192903 354 ntBASIC17.65■□□□□ 0.42
Trim58Q5NCC9 AC153872.1-201ENSMUST00000199539 128 ntBASIC17.65■□□□□ 0.42
Trim58Q5NCC9 Gm46209-201ENSMUST00000217912 553 ntBASIC17.65■□□□□ 0.42
Trim58Q5NCC9 Gm6566-201ENSMUST00000221468 1171 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Trim58Q5NCC9 Gm9229-201ENSMUST00000222777 126 ntBASIC17.65■□□□□ 0.42
Trim58Q5NCC9 Prss38-201ENSMUST00000061481 1243 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim58Q5NCC9 Rhox9-201ENSMUST00000089062 882 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim58Q5NCC9 Rbbp8-201ENSMUST00000047322 3618 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim58Q5NCC9 Kdm6b-201ENSMUST00000094077 6654 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
Trim58Q5NCC9 Pcgf2-201ENSMUST00000018681 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim58Q5NCC9 Steap2-201ENSMUST00000015797 3657 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim58Q5NCC9 Hsf4-206ENSMUST00000173859 1576 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Trim58Q5NCC9 Tmod2-207ENSMUST00000215462 1564 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Trim58Q5NCC9 Madd-201ENSMUST00000066420 3753 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
Trim58Q5NCC9 Fut7-202ENSMUST00000100320 2076 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim58Q5NCC9 Togaram2-205ENSMUST00000153445 3302 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
Trim58Q5NCC9 Prkacb-202ENSMUST00000102515 4347 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim58Q5NCC9 Aanat-205ENSMUST00000153476 1353 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim58Q5NCC9 Sirt3-210ENSMUST00000211179 1606 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
Trim58Q5NCC9 Sun1-202ENSMUST00000078690 2608 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
Trim58Q5NCC9 CT030684.3-201ENSMUST00000227308 2445 ntBASIC17.64■□□□□ 0.42
Trim58Q5NCC9 Gm8337-201ENSMUST00000187358 1938 ntBASIC17.64■□□□□ 0.42
Trim58Q5NCC9 Atxn7l1-202ENSMUST00000090597 2563 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Trim58Q5NCC9 Zhx3-203ENSMUST00000109460 4480 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trim58Q5NCC9 Mettl11b-201ENSMUST00000159679 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trim58Q5NCC9 Slc52a3-201ENSMUST00000073228 2669 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trim58Q5NCC9 Brpf1-210ENSMUST00000204626 4381 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trim58Q5NCC9 Msmp-201ENSMUST00000107884 743 ntAPPRIS P1 TSL 3 BASIC17.64■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 54.5 ms