Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Atcayos-202ENSMUST00000129950 1117 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Chmp6P0C0A3 Lgals3-203ENSMUST00000146468 1072 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Chmp6P0C0A3 Gm25925-201ENSMUST00000158314 306 ntBASIC15.24■□□□□ 0.03
Chmp6P0C0A3 Gm25144-201ENSMUST00000179561 110 ntBASIC15.24■□□□□ 0.03
Chmp6P0C0A3 Gm25352-201ENSMUST00000179815 110 ntBASIC15.24■□□□□ 0.03
Chmp6P0C0A3 5430431A17Rik-201ENSMUST00000206342 795 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Chmp6P0C0A3 4930593C16Rik-202ENSMUST00000214011 714 ntTSL 5 BASIC15.24■□□□□ 0.03
Chmp6P0C0A3 Gm36236-201ENSMUST00000220780 701 ntTSL 3 BASIC15.24■□□□□ 0.03
Chmp6P0C0A3 AC123645.1-201ENSMUST00000228469 605 ntBASIC15.24■□□□□ 0.03
Chmp6P0C0A3 Rit1-201ENSMUST00000029692 1204 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Chmp6P0C0A3 Rhox9-201ENSMUST00000089062 882 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Chmp6P0C0A3 Ccp110-202ENSMUST00000106557 5073 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Chmp6P0C0A3 Exoc6b-203ENSMUST00000160197 5439 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Chmp6P0C0A3 Suv39h1-203ENSMUST00000115638 3116 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Chmp6P0C0A3 Gm42471-201ENSMUST00000201457 1865 ntBASIC15.24■□□□□ 0.03
Chmp6P0C0A3 Plekha1-201ENSMUST00000048180 3321 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Chmp6P0C0A3 Tbc1d5-205ENSMUST00000224528 4764 ntAPPRIS ALT2 BASIC15.24■□□□□ 0.03
Chmp6P0C0A3 Crybg1-202ENSMUST00000200401 7525 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
Chmp6P0C0A3 Kif9-204ENSMUST00000198043 2233 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Chmp6P0C0A3 Marveld3-202ENSMUST00000051430 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Chmp6P0C0A3 Ankrd6-204ENSMUST00000084750 4444 ntAPPRIS P2 TSL 5 BASIC15.24■□□□□ 0.03
Chmp6P0C0A3 Ahdc1-204ENSMUST00000105916 6602 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
Chmp6P0C0A3 Rsrp1-201ENSMUST00000078084 1749 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Chmp6P0C0A3 Nup62-203ENSMUST00000207103 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Chmp6P0C0A3 Gm13223-201ENSMUST00000118609 747 ntBASIC15.23■□□□□ 0.03
Chmp6P0C0A3 Orai3-202ENSMUST00000118865 768 ntTSL 3 BASIC15.23■□□□□ 0.03
Chmp6P0C0A3 Lrrc3c-201ENSMUST00000142268 902 ntAPPRIS P1 TSL 3 BASIC15.23■□□□□ 0.03
Chmp6P0C0A3 Gm27533-201ENSMUST00000183800 152 ntBASIC15.23■□□□□ 0.03
Chmp6P0C0A3 Dupd1-202ENSMUST00000224735 548 ntBASIC15.23■□□□□ 0.03
Chmp6P0C0A3 Shd-206ENSMUST00000225145 998 ntBASIC15.23■□□□□ 0.03
Chmp6P0C0A3 Dkkl1-201ENSMUST00000033057 1149 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Chmp6P0C0A3 Olfr975-201ENSMUST00000054067 933 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
Chmp6P0C0A3 Hist1h3f-201ENSMUST00000075558 1261 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
Chmp6P0C0A3 Mir125a-201ENSMUST00000083545 68 ntBASIC15.23■□□□□ 0.03
Chmp6P0C0A3 Serpina16-201ENSMUST00000095451 1257 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
Chmp6P0C0A3 Mtif2-202ENSMUST00000093239 2741 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Chmp6P0C0A3 Gk5-202ENSMUST00000122383 4455 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Chmp6P0C0A3 Sipa1-204ENSMUST00000169854 3583 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
Chmp6P0C0A3 Gapdh-203ENSMUST00000118875 1420 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Chmp6P0C0A3 Ap2a1-202ENSMUST00000107857 3301 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Chmp6P0C0A3 Gm44981-201ENSMUST00000205549 1943 ntBASIC15.23■□□□□ 0.03
Chmp6P0C0A3 Gm45751-201ENSMUST00000210185 1573 ntBASIC15.23■□□□□ 0.03
Chmp6P0C0A3 Ddx42-201ENSMUST00000021046 4011 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Chmp6P0C0A3 Mrps35-201ENSMUST00000036111 4162 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Chmp6P0C0A3 Gpr45-203ENSMUST00000179766 3776 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Chmp6P0C0A3 Usp1-202ENSMUST00000091358 3527 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Chmp6P0C0A3 Cybrd1-201ENSMUST00000028403 5339 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Chmp6P0C0A3 Ap3d1-201ENSMUST00000020420 4805 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Chmp6P0C0A3 Lzts3-203ENSMUST00000110260 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Chmp6P0C0A3 B3gat1-204ENSMUST00000160899 3801 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Chmp6P0C0A3 Asb16-201ENSMUST00000036467 2843 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Chmp6P0C0A3 Zfp707-201ENSMUST00000109966 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Chmp6P0C0A3 Gm26513-201ENSMUST00000181802 2489 ntBASIC15.22■□□□□ 0.03
Chmp6P0C0A3 Slc9a3-201ENSMUST00000036208 2490 ntAPPRIS P2 TSL 2 BASIC15.22■□□□□ 0.03
Chmp6P0C0A3 Spock1-205ENSMUST00000187852 3113 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Chmp6P0C0A3 Steap2-203ENSMUST00000115425 4550 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Chmp6P0C0A3 Slc7a7-206ENSMUST00000197440 2278 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Chmp6P0C0A3 Npnt-204ENSMUST00000117164 1779 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Chmp6P0C0A3 Prss23-201ENSMUST00000041761 3228 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Chmp6P0C0A3 Btbd10-201ENSMUST00000047091 2581 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Chmp6P0C0A3 Il18r1-203ENSMUST00000167723 1919 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Chmp6P0C0A3 Arhgap4-204ENSMUST00000114406 2749 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Chmp6P0C0A3 Cnga3-203ENSMUST00000194195 2083 ntAPPRIS P3 TSL 5 BASIC15.22■□□□□ 0.03
Chmp6P0C0A3 Adprm-201ENSMUST00000116363 1283 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Chmp6P0C0A3 Crybb3-204ENSMUST00000119627 828 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
Chmp6P0C0A3 Igfbp4-204ENSMUST00000140772 742 ntTSL 2 BASIC15.22■□□□□ 0.03
Chmp6P0C0A3 Zfp511-201ENSMUST00000168194 1076 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
Chmp6P0C0A3 Gm7030-203ENSMUST00000173322 913 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Chmp6P0C0A3 4930448I06Rik-201ENSMUST00000194002 546 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Chmp6P0C0A3 H2-Bl-209ENSMUST00000194244 862 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Chmp6P0C0A3 Mcee-203ENSMUST00000206194 532 ntTSL 2 BASIC15.22■□□□□ 0.03
Chmp6P0C0A3 Sar1b-201ENSMUST00000020653 1201 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Chmp6P0C0A3 Vsig2-204ENSMUST00000215271 891 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Chmp6P0C0A3 4930408O17Rik-202ENSMUST00000222624 1131 ntTSL 5 BASIC15.22■□□□□ 0.03
Chmp6P0C0A3 Gm7030-201ENSMUST00000046131 913 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
Chmp6P0C0A3 Syce1l-202ENSMUST00000095173 791 ntAPPRIS P4 TSL 1 (best) BASIC15.22■□□□□ 0.03
Chmp6P0C0A3 Apbb1-213ENSMUST00000189265 1429 ntTSL 5 BASIC15.22■□□□□ 0.03
Chmp6P0C0A3 Gcsh-201ENSMUST00000040484 1443 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Chmp6P0C0A3 3110082I17Rik-201ENSMUST00000066052 1429 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Chmp6P0C0A3 Sh3bp5-201ENSMUST00000091903 2684 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
Chmp6P0C0A3 Scn4b-201ENSMUST00000060125 4982 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Chmp6P0C0A3 Rhobtb1-210ENSMUST00000167384 2331 ntTSL 5 BASIC15.22■□□□□ 0.03
Chmp6P0C0A3 Aste1-201ENSMUST00000035181 2755 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
Chmp6P0C0A3 Rinl-206ENSMUST00000209035 2898 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Chmp6P0C0A3 Gtf2ird1-205ENSMUST00000100654 3156 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Chmp6P0C0A3 Pcdh7-202ENSMUST00000094783 3752 ntAPPRIS ALT1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Chmp6P0C0A3 Cacna1g-203ENSMUST00000103166 8104 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
Chmp6P0C0A3 Ikzf5-202ENSMUST00000121033 2231 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Chmp6P0C0A3 Zfp109-201ENSMUST00000037448 1935 ntAPPRIS P2 TSL 5 BASIC15.21■□□□□ 0.03
Chmp6P0C0A3 Cdc73-201ENSMUST00000018337 11586 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Chmp6P0C0A3 Zfp219-201ENSMUST00000067549 2933 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Chmp6P0C0A3 Ank-201ENSMUST00000022875 3498 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Chmp6P0C0A3 Tle3-210ENSMUST00000161207 2592 ntTSL 5 BASIC15.21■□□□□ 0.03
Chmp6P0C0A3 Mllt6-201ENSMUST00000044730 7274 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Chmp6P0C0A3 St8sia3-201ENSMUST00000025477 6282 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Chmp6P0C0A3 Sirt3-202ENSMUST00000106048 1416 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Chmp6P0C0A3 Cryba4-202ENSMUST00000112383 754 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Chmp6P0C0A3 Gm13453-201ENSMUST00000118708 357 ntBASIC15.21■□□□□ 0.03
Chmp6P0C0A3 Kif16bos-201ENSMUST00000124774 495 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Chmp6P0C0A3 Haghl-203ENSMUST00000133071 1128 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 32.8 ms