Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Slc52a3-203ENSMUST00000109859 2204 ntTSL 5 BASIC10.93□□□□□ -0.66
Hoxd3P09027 Scyl3-207ENSMUST00000170359 4288 ntAPPRIS ALT2 TSL 5 BASIC10.93□□□□□ -0.66
Hoxd3P09027 Rnf167-201ENSMUST00000037534 1833 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Hoxd3P09027 Gabrg3-202ENSMUST00000068911 9767 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Hoxd3P09027 Nrp2-204ENSMUST00000102822 6708 ntAPPRIS ALT2 TSL 1 (best) BASIC10.93□□□□□ -0.66
Hoxd3P09027 Kctd3-201ENSMUST00000085678 3706 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Hoxd3P09027 Itm2b-201ENSMUST00000022704 1796 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Hoxd3P09027 Ptp4a2-207ENSMUST00000165853 3382 ntAPPRIS P1 TSL 5 BASIC10.93□□□□□ -0.66
Hoxd3P09027 Lmntd2-202ENSMUST00000170841 2077 ntAPPRIS ALT2 TSL 1 (best) BASIC10.93□□□□□ -0.66
Hoxd3P09027 Klhl21-201ENSMUST00000097773 3986 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Hoxd3P09027 Cluh-202ENSMUST00000117818 4284 ntAPPRIS ALT2 TSL 1 (best) BASIC10.92□□□□□ -0.66
Hoxd3P09027 Fntb-206ENSMUST00000137826 1442 ntAPPRIS P1 TSL 5 BASIC10.92□□□□□ -0.66
Hoxd3P09027 F420014N23Rik-201ENSMUST00000181578 2396 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Hoxd3P09027 Gm11946-201ENSMUST00000123459 3941 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Hoxd3P09027 Hnrnpa3-202ENSMUST00000111961 1734 ntAPPRIS ALT2 TSL 1 (best) BASIC10.92□□□□□ -0.66
Hoxd3P09027 Scap-201ENSMUST00000098350 4227 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Hoxd3P09027 Spns1-202ENSMUST00000119754 2001 ntTSL 5 BASIC10.92□□□□□ -0.66
Hoxd3P09027 Foxred2-201ENSMUST00000016696 4793 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Hoxd3P09027 Hormad1-201ENSMUST00000029754 1385 ntAPPRIS ALT2 TSL 1 (best) BASIC10.92□□□□□ -0.66
Hoxd3P09027 Prrg4-201ENSMUST00000028593 2872 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Hoxd3P09027 Atp8a1-201ENSMUST00000037380 8178 ntAPPRIS P4 TSL 1 (best) BASIC10.92□□□□□ -0.66
Hoxd3P09027 Cep295nl-201ENSMUST00000103024 1944 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Hoxd3P09027 Pglyrp2-201ENSMUST00000114455 1915 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Hoxd3P09027 Trnt1-204ENSMUST00000113249 1614 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Hoxd3P09027 Gm26546-201ENSMUST00000181000 4276 ntTSL 5 BASIC10.92□□□□□ -0.66
Hoxd3P09027 Endov-202ENSMUST00000106244 5070 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Hoxd3P09027 Rai2-202ENSMUST00000112338 2165 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Hoxd3P09027 Nup62-205ENSMUST00000208626 2708 ntAPPRIS P1 TSL 5 BASIC10.92□□□□□ -0.66
Hoxd3P09027 Nup62-201ENSMUST00000057195 2722 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Hoxd3P09027 Ctnnd2-203ENSMUST00000226119 4111 ntAPPRIS ALT2 BASIC10.92□□□□□ -0.66
Hoxd3P09027 Rph3al-203ENSMUST00000108420 695 ntTSL 3 BASIC10.92□□□□□ -0.66
Hoxd3P09027 2210408F21Rik-214ENSMUST00000155345 1022 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Hoxd3P09027 Il11-202ENSMUST00000163481 990 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Hoxd3P09027 Ift27-201ENSMUST00000016781 1012 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Hoxd3P09027 Trp53tg5-201ENSMUST00000017864 934 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Hoxd3P09027 Gltpd2-202ENSMUST00000179000 794 ntAPPRIS ALT2 TSL 2 BASIC10.92□□□□□ -0.66
Hoxd3P09027 Gm15294-202ENSMUST00000182079 366 ntAPPRIS P1 BASIC10.92□□□□□ -0.66
Hoxd3P09027 Nabp1-202ENSMUST00000185534 708 ntTSL 2 BASIC10.92□□□□□ -0.66
Hoxd3P09027 Hist1h3h-201ENSMUST00000188775 411 ntAPPRIS P1 BASIC10.92□□□□□ -0.66
Hoxd3P09027 Hist1h3i-201ENSMUST00000189457 411 ntAPPRIS P1 BASIC10.92□□□□□ -0.66
Hoxd3P09027 Ociad1-210ENSMUST00000202250 800 ntTSL 2 BASIC10.92□□□□□ -0.66
Hoxd3P09027 Gm45504-201ENSMUST00000211407 2107 ntBASIC10.92□□□□□ -0.66
Hoxd3P09027 Tex13b-201ENSMUST00000044179 2116 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Hoxd3P09027 Med22-202ENSMUST00000102899 3506 ntAPPRIS ALT1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Hoxd3P09027 Emilin3-201ENSMUST00000057169 3547 ntAPPRIS P3 TSL 1 (best) BASIC10.92□□□□□ -0.66
Hoxd3P09027 Itgb4-203ENSMUST00000106458 5779 ntAPPRIS ALT2 TSL 5 BASIC10.92□□□□□ -0.66
Hoxd3P09027 Nat8f3-201ENSMUST00000050780 1821 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Hoxd3P09027 Opn5-201ENSMUST00000068355 1824 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Hoxd3P09027 Trem1-202ENSMUST00000113251 2077 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Hoxd3P09027 Gpr108-201ENSMUST00000005975 2095 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Hoxd3P09027 Ubqln1-201ENSMUST00000058735 3686 ntAPPRIS ALT2 TSL 1 (best) BASIC10.92□□□□□ -0.66
Hoxd3P09027 Dr1-201ENSMUST00000031190 3085 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Hoxd3P09027 Cc2d1b-201ENSMUST00000030320 3303 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Hoxd3P09027 Dlk1-205ENSMUST00000109844 1703 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Hoxd3P09027 Tcf19-202ENSMUST00000160885 1732 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Hoxd3P09027 Tle3-201ENSMUST00000034820 4646 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Hoxd3P09027 Krt18-201ENSMUST00000023803 1400 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Hoxd3P09027 Alx1-208ENSMUST00000219194 1695 ntAPPRIS P1 TSL 5 BASIC10.92□□□□□ -0.66
Hoxd3P09027 4933435F18Rik-202ENSMUST00000154878 2174 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Hoxd3P09027 Mfsd2a-201ENSMUST00000030408 2151 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Hoxd3P09027 Reck-201ENSMUST00000030198 4433 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Hoxd3P09027 Pcdha11-201ENSMUST00000115658 5359 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Hoxd3P09027 Lmf1-202ENSMUST00000116641 1858 ntAPPRIS P2 TSL 5 BASIC10.91□□□□□ -0.66
Hoxd3P09027 Atp2a3-207ENSMUST00000163326 4606 ntAPPRIS ALT2 TSL 5 BASIC10.91□□□□□ -0.66
Hoxd3P09027 Neurod2-201ENSMUST00000041685 3142 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Hoxd3P09027 Lmf1-201ENSMUST00000063344 1861 ntAPPRIS ALT2 TSL 5 BASIC10.91□□□□□ -0.66
Hoxd3P09027 Slc8b1-201ENSMUST00000068326 2898 ntAPPRIS P2 TSL 1 (best) BASIC10.91□□□□□ -0.66
Hoxd3P09027 Krcc1-201ENSMUST00000080949 1393 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Hoxd3P09027 Gm4981-201ENSMUST00000099726 1854 ntAPPRIS P1 BASIC10.91□□□□□ -0.66
Hoxd3P09027 Gm45779-201ENSMUST00000212189 4064 ntBASIC10.91□□□□□ -0.66
Hoxd3P09027 Rnf123-214ENSMUST00000162355 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC10.91□□□□□ -0.66
Hoxd3P09027 Sox5-202ENSMUST00000077160 2526 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Hoxd3P09027 Carmil3-201ENSMUST00000076236 4602 ntAPPRIS P1 TSL 2 BASIC10.91□□□□□ -0.66
Hoxd3P09027 Trp53bp2-201ENSMUST00000117245 4361 ntAPPRIS P1 TSL 5 BASIC10.91□□□□□ -0.66
Hoxd3P09027 Acot3-201ENSMUST00000021653 3431 ntAPPRIS P3 TSL 1 (best) BASIC10.91□□□□□ -0.66
Hoxd3P09027 Tmem143-203ENSMUST00000209350 2466 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Hoxd3P09027 Rnf11-201ENSMUST00000030284 4061 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Hoxd3P09027 Snx29-207ENSMUST00000180792 2667 ntAPPRIS P1 TSL 5 BASIC10.91□□□□□ -0.66
Hoxd3P09027 Sytl1-201ENSMUST00000030674 1951 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Hoxd3P09027 B230359F08Rik-201ENSMUST00000103671 426 ntAPPRIS P1 BASIC10.91□□□□□ -0.66
Hoxd3P09027 Uqcrq-203ENSMUST00000109021 405 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Hoxd3P09027 Cmss1-201ENSMUST00000114371 930 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Hoxd3P09027 Crybb3-203ENSMUST00000118226 892 ntAPPRIS P1 TSL 3 BASIC10.91□□□□□ -0.66
Hoxd3P09027 Rpl34-203ENSMUST00000133802 711 ntTSL 2 BASIC10.91□□□□□ -0.66
Hoxd3P09027 Flt3l-201ENSMUST00000146760 1075 ntAPPRIS P2 TSL 1 (best) BASIC10.91□□□□□ -0.66
Hoxd3P09027 Pttg1ip-205ENSMUST00000162429 652 ntAPPRIS ALT2 TSL 2 BASIC10.91□□□□□ -0.66
Hoxd3P09027 Eloc-207ENSMUST00000187910 620 ntTSL 2 BASIC10.91□□□□□ -0.66
Hoxd3P09027 Ighv8-14-201ENSMUST00000196781 358 ntBASIC10.91□□□□□ -0.66
Hoxd3P09027 Gtpbp10-211ENSMUST00000198799 648 ntBASIC10.91□□□□□ -0.66
Hoxd3P09027 AC153912.1-201ENSMUST00000217011 724 ntAPPRIS P1 TSL 3 BASIC10.91□□□□□ -0.66
Hoxd3P09027 Gm6218-201ENSMUST00000219812 628 ntBASIC10.91□□□□□ -0.66
Hoxd3P09027 Oxt-201ENSMUST00000028764 537 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Hoxd3P09027 Fam151b-201ENSMUST00000040106 1152 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Hoxd3P09027 Selenow-201ENSMUST00000044355 736 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Hoxd3P09027 Olfr1412-201ENSMUST00000062964 966 ntAPPRIS P1 BASIC10.91□□□□□ -0.66
Hoxd3P09027 Crybb3-201ENSMUST00000076069 816 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Hoxd3P09027 Hist1h2al-201ENSMUST00000091708 339 ntBASIC10.91□□□□□ -0.66
Hoxd3P09027 Gm5169-201ENSMUST00000096469 768 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Hoxd3P09027 Msantd2-204ENSMUST00000211060 2165 ntTSL 3 BASIC10.91□□□□□ -0.66
Hoxd3P09027 S100b-201ENSMUST00000036387 1484 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Retrieved 100 of 76,532 protein–RNA pairs in 39.4 ms