Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Klhl12-203ENSMUST00000116528 3277 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
Col3a1P08121 Trmt10c-201ENSMUST00000059052 3002 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Col3a1P08121 Ociad2-201ENSMUST00000087195 2554 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Col3a1P08121 Hsd3b4-202ENSMUST00000196861 1610 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Col3a1P08121 Gm10681-201ENSMUST00000058728 1610 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Col3a1P08121 Irf3-201ENSMUST00000003284 2031 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Col3a1P08121 Hoxa7-201ENSMUST00000048715 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Col3a1P08121 Atp6ap1-201ENSMUST00000019231 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Col3a1P08121 Daxx-201ENSMUST00000079421 2580 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Col3a1P08121 Gm21451-201ENSMUST00000111062 2775 ntBASIC16.48■□□□□ 0.23
Col3a1P08121 Git2-204ENSMUST00000112185 5032 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Col3a1P08121 Rxrg-204ENSMUST00000111386 1705 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
Col3a1P08121 Snx22-201ENSMUST00000044711 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Col3a1P08121 Ccne2-202ENSMUST00000108324 2908 ntAPPRIS P4 TSL 1 (best) BASIC16.48■□□□□ 0.23
Col3a1P08121 Rnf44-201ENSMUST00000037422 3734 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Col3a1P08121 Palm-201ENSMUST00000046945 2651 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Col3a1P08121 Clcnkb-202ENSMUST00000105788 2490 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Col3a1P08121 Rpl18a-ps1-201ENSMUST00000161190 523 ntBASIC16.48■□□□□ 0.23
Col3a1P08121 Gm4271-201ENSMUST00000174444 973 ntBASIC16.48■□□□□ 0.23
Col3a1P08121 Gm9124-201ENSMUST00000191789 1092 ntBASIC16.48■□□□□ 0.23
Col3a1P08121 Gm9113-201ENSMUST00000192510 1018 ntBASIC16.48■□□□□ 0.23
Col3a1P08121 Gm9131-201ENSMUST00000193557 1089 ntBASIC16.48■□□□□ 0.23
Col3a1P08121 Gm9121-201ENSMUST00000193749 1071 ntBASIC16.48■□□□□ 0.23
Col3a1P08121 Dnd1-ps-201ENSMUST00000196992 964 ntBASIC16.48■□□□□ 0.23
Col3a1P08121 Jakmip1-215ENSMUST00000212047 1191 ntTSL 5 BASIC16.48■□□□□ 0.23
Col3a1P08121 AC155237.1-201ENSMUST00000226196 1279 ntBASIC16.48■□□□□ 0.23
Col3a1P08121 2310002L09Rik-201ENSMUST00000030101 958 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
Col3a1P08121 B230118H07Rik-202ENSMUST00000099682 895 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
Col3a1P08121 Gm10676-201ENSMUST00000098778 3221 ntBASIC16.48■□□□□ 0.23
Col3a1P08121 Prkcsh-205ENSMUST00000216344 2228 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
Col3a1P08121 Trip4-201ENSMUST00000117083 1999 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Col3a1P08121 Cyp11a1-201ENSMUST00000034874 2120 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Col3a1P08121 Plxdc1-203ENSMUST00000107565 2439 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Col3a1P08121 Hsd17b11-202ENSMUST00000119025 2234 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Col3a1P08121 Vash1-201ENSMUST00000021681 2599 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Col3a1P08121 Iffo2-202ENSMUST00000123827 2036 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
Col3a1P08121 Tmem5-205ENSMUST00000140299 4793 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Col3a1P08121 Dbndd1-203ENSMUST00000177240 1463 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Col3a1P08121 Zfp839-201ENSMUST00000170060 3723 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Col3a1P08121 4930579G24Rik-201ENSMUST00000029388 1970 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Col3a1P08121 Gm11638-201ENSMUST00000153672 1615 ntTSL 2 BASIC16.47■□□□□ 0.23
Col3a1P08121 Cpsf4l-203ENSMUST00000106617 1123 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Col3a1P08121 Gm12203-201ENSMUST00000118235 598 ntBASIC16.47■□□□□ 0.23
Col3a1P08121 Gm12209-201ENSMUST00000120089 596 ntBASIC16.47■□□□□ 0.23
Col3a1P08121 Gm16177-201ENSMUST00000120728 718 ntBASIC16.47■□□□□ 0.23
Col3a1P08121 Myl3-203ENSMUST00000136695 614 ntAPPRIS ALT2 TSL 3 BASIC16.47■□□□□ 0.23
Col3a1P08121 Fkbp2-202ENSMUST00000177752 627 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Col3a1P08121 Trmt112-ps1-201ENSMUST00000202320 375 ntBASIC16.47■□□□□ 0.23
Col3a1P08121 Gm9299-201ENSMUST00000206392 1140 ntBASIC16.47■□□□□ 0.23
Col3a1P08121 Spc24-204ENSMUST00000216057 627 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Col3a1P08121 AC126253.1-201ENSMUST00000227974 824 ntBASIC16.47■□□□□ 0.23
Col3a1P08121 Gm3695-201ENSMUST00000087222 1009 ntBASIC16.47■□□□□ 0.23
Col3a1P08121 Tldc2-201ENSMUST00000099140 608 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
Col3a1P08121 Pnpla2-203ENSMUST00000164016 2625 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Col3a1P08121 Camsap3-201ENSMUST00000057028 4450 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
Col3a1P08121 Ado-201ENSMUST00000075686 4445 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
Col3a1P08121 Rhoj-201ENSMUST00000055390 2350 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Col3a1P08121 Zswim4-201ENSMUST00000039480 4625 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Col3a1P08121 Nanos1-201ENSMUST00000088237 3927 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
Col3a1P08121 Map2k7-202ENSMUST00000062686 3525 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Col3a1P08121 Gm13075-202ENSMUST00000149247 1621 ntTSL 5 BASIC16.46■□□□□ 0.23
Col3a1P08121 Sf3a2-203ENSMUST00000148665 2213 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Col3a1P08121 Sohlh2-201ENSMUST00000029369 2364 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Col3a1P08121 Midn-201ENSMUST00000042057 3727 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
Col3a1P08121 Gm15851-201ENSMUST00000160564 662 ntTSL 3 BASIC16.46■□□□□ 0.23
Col3a1P08121 Gm17420-201ENSMUST00000164753 153 ntBASIC16.46■□□□□ 0.23
Col3a1P08121 Atp8b2-210ENSMUST00000168276 4265 ntAPPRIS P2 TSL 5 BASIC16.46■□□□□ 0.23
Col3a1P08121 Gm9728-201ENSMUST00000200197 1055 ntBASIC16.46■□□□□ 0.23
Col3a1P08121 Rtraf-201ENSMUST00000022341 1562 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Col3a1P08121 Me2-201ENSMUST00000025439 2455 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Col3a1P08121 Rbbp8nl-201ENSMUST00000038529 2319 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Col3a1P08121 Gm10478-201ENSMUST00000084451 396 ntBASIC16.46■□□□□ 0.23
Col3a1P08121 Gm11563-201ENSMUST00000092695 1012 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
Col3a1P08121 Gm10040-201ENSMUST00000080726 1662 ntBASIC16.46■□□□□ 0.22
Col3a1P08121 Zfp710-201ENSMUST00000049680 4721 ntAPPRIS P4 TSL 1 (best) BASIC16.46■□□□□ 0.22
Col3a1P08121 Crym-201ENSMUST00000033198 1383 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
Col3a1P08121 Slc52a3-203ENSMUST00000109859 2204 ntTSL 5 BASIC16.46■□□□□ 0.22
Col3a1P08121 Slc12a8-202ENSMUST00000117134 2081 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Col3a1P08121 Gm37912-201ENSMUST00000191895 3076 ntBASIC16.45■□□□□ 0.22
Col3a1P08121 Gm26880-201ENSMUST00000181610 1318 ntTSL 5 BASIC16.45■□□□□ 0.22
Col3a1P08121 H2-DMb2-201ENSMUST00000041982 1347 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Col3a1P08121 Abl1-201ENSMUST00000028190 5794 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
Col3a1P08121 Tjap1-211ENSMUST00000225080 2412 ntAPPRIS P2 BASIC16.45■□□□□ 0.22
Col3a1P08121 Pja1-205ENSMUST00000167246 2666 ntAPPRIS P4 TSL 1 (best) BASIC16.45■□□□□ 0.22
Col3a1P08121 Gm15336-201ENSMUST00000128894 1571 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Col3a1P08121 Myef2-206ENSMUST00000142718 2942 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
Col3a1P08121 Mto1-201ENSMUST00000034896 2366 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Col3a1P08121 Ehd4-201ENSMUST00000028755 3730 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Col3a1P08121 Syvn1-201ENSMUST00000025723 2780 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
Col3a1P08121 4933409G03Rik-201ENSMUST00000102713 1263 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Col3a1P08121 Mir1247-201ENSMUST00000116706 82 ntBASIC16.45■□□□□ 0.22
Col3a1P08121 Trav4d-2-201ENSMUST00000120914 335 ntBASIC16.45■□□□□ 0.22
Col3a1P08121 Gm13716-201ENSMUST00000126401 808 ntTSL 5 BASIC16.45■□□□□ 0.22
Col3a1P08121 Rdh18-ps-201ENSMUST00000137395 944 ntBASIC16.45■□□□□ 0.22
Col3a1P08121 Rdh18-ps-202ENSMUST00000143917 953 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Col3a1P08121 1700069L16Rik-203ENSMUST00000162388 706 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Col3a1P08121 6030498E09Rik-202ENSMUST00000168144 510 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
Col3a1P08121 Aif1-206ENSMUST00000173324 875 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Col3a1P08121 Gm3893-201ENSMUST00000178882 909 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
Col3a1P08121 Ssr2-202ENSMUST00000192495 620 ntTSL 5 BASIC16.45■□□□□ 0.22
Retrieved 100 of 76,532 protein–RNA pairs in 42 ms