Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Mrps21-202ENSMUST00000072587 405 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Lmx1bO88609 Cav3-201ENSMUST00000075477 1157 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Lmx1bO88609 Crybb3-201ENSMUST00000076069 816 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Lmx1bO88609 Tmed8-201ENSMUST00000037418 7409 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Lmx1bO88609 Slit1-202ENSMUST00000166496 4556 ntTSL 5 BASIC12.67□□□□□ -0.38
Lmx1bO88609 Slc39a3-202ENSMUST00000117276 3796 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Lmx1bO88609 Ppp1r15a-202ENSMUST00000167273 2809 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.38
Lmx1bO88609 Atp2b3-201ENSMUST00000033744 3894 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Lmx1bO88609 Dkk1-201ENSMUST00000025803 2427 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Lmx1bO88609 Ubc-203ENSMUST00000156249 2581 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.38
Lmx1bO88609 Madd-201ENSMUST00000066420 3753 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
Lmx1bO88609 Ube2g1-203ENSMUST00000138247 3931 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Lmx1bO88609 Anks1b-204ENSMUST00000179337 2692 ntTSL 5 BASIC12.66□□□□□ -0.38
Lmx1bO88609 B4galnt1-201ENSMUST00000006914 2395 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Lmx1bO88609 Irf7-203ENSMUST00000106023 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Lmx1bO88609 Alox8-202ENSMUST00000094078 1947 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
Lmx1bO88609 Arid1b-202ENSMUST00000115797 11325 ntAPPRIS P2 TSL 5 BASIC12.66□□□□□ -0.38
Lmx1bO88609 Lpar1-201ENSMUST00000055018 3512 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
Lmx1bO88609 Slc27a1-201ENSMUST00000034267 2795 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Lmx1bO88609 Kcnk6-201ENSMUST00000085818 4084 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Lmx1bO88609 Gpr155-202ENSMUST00000076463 5061 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
Lmx1bO88609 Mesd-201ENSMUST00000094215 4492 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Lmx1bO88609 Cdk11b-203ENSMUST00000105600 3170 ntAPPRIS P3 TSL 5 BASIC12.66□□□□□ -0.38
Lmx1bO88609 Zbed4-201ENSMUST00000041297 5425 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Lmx1bO88609 Rps6ka5-201ENSMUST00000043599 4406 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Lmx1bO88609 Fbxo44-205ENSMUST00000151127 1403 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Lmx1bO88609 Gm12882-201ENSMUST00000121696 517 ntBASIC12.66□□□□□ -0.38
Lmx1bO88609 Gm15491-201ENSMUST00000133963 751 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Lmx1bO88609 AI413582-204ENSMUST00000154473 836 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Lmx1bO88609 Fbxw4-204ENSMUST00000160018 931 ntTSL 3 BASIC12.66□□□□□ -0.38
Lmx1bO88609 Six3os1-205ENSMUST00000175913 791 ntTSL 3 BASIC12.66□□□□□ -0.38
Lmx1bO88609 Gm21854-201ENSMUST00000179901 471 ntBASIC12.66□□□□□ -0.38
Lmx1bO88609 Gm15294-202ENSMUST00000182079 366 ntAPPRIS P1 BASIC12.66□□□□□ -0.38
Lmx1bO88609 Gm28760-201ENSMUST00000185995 736 ntBASIC12.66□□□□□ -0.38
Lmx1bO88609 Gm28942-201ENSMUST00000186334 365 ntTSL 3 BASIC12.66□□□□□ -0.38
Lmx1bO88609 Lyzl6-201ENSMUST00000021328 900 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Lmx1bO88609 Cplx3-202ENSMUST00000215487 594 ntTSL 3 BASIC12.66□□□□□ -0.38
Lmx1bO88609 AC165157.4-201ENSMUST00000220587 139 ntBASIC12.66□□□□□ -0.38
Lmx1bO88609 Tmem253-203ENSMUST00000227295 704 ntAPPRIS ALT2 BASIC12.66□□□□□ -0.38
Lmx1bO88609 Rpp21-201ENSMUST00000025319 729 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Lmx1bO88609 Epo-201ENSMUST00000031723 715 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
Lmx1bO88609 Rps11-201ENSMUST00000003521 661 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Lmx1bO88609 D6Ertd527e-204ENSMUST00000204927 2218 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
Lmx1bO88609 St6gal2-202ENSMUST00000086878 2606 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Lmx1bO88609 Cblb-204ENSMUST00000227062 3728 ntAPPRIS P2 BASIC12.66□□□□□ -0.38
Lmx1bO88609 Taco1-201ENSMUST00000002048 1383 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Lmx1bO88609 Epb41l1-202ENSMUST00000103135 6177 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
Lmx1bO88609 P2rx3-202ENSMUST00000111613 1764 ntAPPRIS ALT1 TSL 5 BASIC12.66□□□□□ -0.38
Lmx1bO88609 Ubiad1-201ENSMUST00000051633 2992 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Lmx1bO88609 Pgap2-225ENSMUST00000156529 2034 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Lmx1bO88609 Map7d1-201ENSMUST00000061143 3351 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
Lmx1bO88609 Gm10125-203ENSMUST00000161096 3493 ntTSL 3 BASIC12.65□□□□□ -0.38
Lmx1bO88609 Mtrr-209ENSMUST00000223398 3861 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Lmx1bO88609 Foxp2-207ENSMUST00000115477 6760 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
Lmx1bO88609 Sesn3-207ENSMUST00000209187 1700 ntTSL 5 BASIC12.65□□□□□ -0.38
Lmx1bO88609 Fbxo21-206ENSMUST00000202447 3959 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
Lmx1bO88609 Sipa1-204ENSMUST00000169854 3583 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.38
Lmx1bO88609 Vps26b-201ENSMUST00000034470 3575 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Lmx1bO88609 Tmem19-203ENSMUST00000217884 2799 ntTSL 5 BASIC12.65□□□□□ -0.38
Lmx1bO88609 Grid2ip-202ENSMUST00000110733 3825 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Lmx1bO88609 Tbx3-201ENSMUST00000018748 4856 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Lmx1bO88609 Me1-201ENSMUST00000034989 3288 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Lmx1bO88609 Cplx2-201ENSMUST00000026985 4928 ntAPPRIS P1 TSL 2 BASIC12.65□□□□□ -0.38
Lmx1bO88609 Kcng1-201ENSMUST00000099069 2316 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Lmx1bO88609 Rgs19-204ENSMUST00000108772 779 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Lmx1bO88609 Rnd1-202ENSMUST00000109149 1034 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Lmx1bO88609 Id1-202ENSMUST00000109824 1160 ntAPPRIS ALT2 BASIC12.65□□□□□ -0.38
Lmx1bO88609 Prrx2-202ENSMUST00000113592 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Lmx1bO88609 Rnaseh2a-206ENSMUST00000128972 1141 ntTSL 2 BASIC12.65□□□□□ -0.38
Lmx1bO88609 4930592C13Rik-201ENSMUST00000196791 661 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Lmx1bO88609 Tbc1d17-209ENSMUST00000207293 692 ntTSL 3 BASIC12.65□□□□□ -0.38
Lmx1bO88609 Gm40193-201ENSMUST00000209971 237 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.38
Lmx1bO88609 AC158987.1-201ENSMUST00000214586 961 ntTSL 5 BASIC12.65□□□□□ -0.38
Lmx1bO88609 Fgfr1op2-201ENSMUST00000037836 687 ntTSL 3 BASIC12.65□□□□□ -0.38
Lmx1bO88609 Gm9949-201ENSMUST00000067743 962 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Lmx1bO88609 Pdlim7-202ENSMUST00000069929 899 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Lmx1bO88609 Arid4b-201ENSMUST00000039538 5844 ntTSL 5 BASIC12.65□□□□□ -0.38
Lmx1bO88609 Ap4e1-203ENSMUST00000110394 2271 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Lmx1bO88609 Klhl12-203ENSMUST00000116528 3277 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.38
Lmx1bO88609 Nek7-202ENSMUST00000186017 5258 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Lmx1bO88609 Plxna1-202ENSMUST00000163139 9034 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Lmx1bO88609 Enpp1-203ENSMUST00000135846 2721 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Lmx1bO88609 Tmem164-202ENSMUST00000101198 4443 ntTSL 3 BASIC12.65□□□□□ -0.38
Lmx1bO88609 Rreb1-202ENSMUST00000110237 4617 ntTSL 1 (best) BASIC12.65□□□□□ -0.39
Lmx1bO88609 Zfp707-201ENSMUST00000109966 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.39
Lmx1bO88609 Hsf4-206ENSMUST00000173859 1576 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Lmx1bO88609 Pid1-204ENSMUST00000176559 1564 ntTSL 2 BASIC12.64□□□□□ -0.39
Lmx1bO88609 Sectm1a-203ENSMUST00000106119 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Lmx1bO88609 4930423C22Rik-201ENSMUST00000193863 1311 ntBASIC12.64□□□□□ -0.39
Lmx1bO88609 Gpr153-202ENSMUST00000105650 3838 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
Lmx1bO88609 Dusp23-201ENSMUST00000027826 1410 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Lmx1bO88609 Sohlh2-201ENSMUST00000029369 2364 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Lmx1bO88609 Espn-220ENSMUST00000207676 4618 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
Lmx1bO88609 Itm2b-201ENSMUST00000022704 1796 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Lmx1bO88609 A330035P11Rik-202ENSMUST00000144926 3074 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Lmx1bO88609 Gm14451-201ENSMUST00000121581 1542 ntBASIC12.64□□□□□ -0.39
Lmx1bO88609 Rasal3-207ENSMUST00000137458 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Lmx1bO88609 Avpr1a-201ENSMUST00000020323 2670 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Lmx1bO88609 Ttll5-203ENSMUST00000095536 4150 ntAPPRIS ALT2 TSL 2 BASIC12.64□□□□□ -0.39
Lmx1bO88609 Gm12585-201ENSMUST00000117307 290 ntBASIC12.64□□□□□ -0.39
Retrieved 100 of 76,532 protein–RNA pairs in 27.6 ms