Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Arhgef2-229ENSMUST00000177303 3000 ntAPPRIS ALT2 TSL 5 BASIC11.56□□□□□ -0.56
Hmgb3O54879 Exd2-201ENSMUST00000038185 3310 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Hmgb3O54879 Ccnt1-208ENSMUST00000169707 7397 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Hmgb3O54879 Cops9-202ENSMUST00000112999 653 ntTSL 3 BASIC11.56□□□□□ -0.56
Hmgb3O54879 Dok7-203ENSMUST00000114270 2779 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Hmgb3O54879 Gm15593-201ENSMUST00000122085 1008 ntBASIC11.56□□□□□ -0.56
Hmgb3O54879 Saa1-201ENSMUST00000128088 609 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Hmgb3O54879 4930401G09Rik-201ENSMUST00000139500 637 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
Hmgb3O54879 Gm44973-201ENSMUST00000207050 1003 ntAPPRIS P1 TSL 3 BASIC11.56□□□□□ -0.56
Hmgb3O54879 Efemp1-201ENSMUST00000020759 2037 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Hmgb3O54879 Saa2-203ENSMUST00000210769 652 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Hmgb3O54879 AC140264.2-201ENSMUST00000219668 289 ntTSL 2 BASIC11.56□□□□□ -0.56
Hmgb3O54879 Nmu-201ENSMUST00000031146 828 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Hmgb3O54879 Lce1a1-201ENSMUST00000074142 705 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Hmgb3O54879 Saa2-201ENSMUST00000075982 606 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Hmgb3O54879 Gm5096-201ENSMUST00000091776 1858 ntAPPRIS P1 BASIC11.56□□□□□ -0.56
Hmgb3O54879 Atp6v0c-202ENSMUST00000098862 796 ntAPPRIS P1 TSL 2 BASIC11.56□□□□□ -0.56
Hmgb3O54879 Bhmt-201ENSMUST00000099309 2490 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Hmgb3O54879 Fbxl12-203ENSMUST00000131128 4182 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
Hmgb3O54879 Arl6ip6-201ENSMUST00000028336 2548 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Hmgb3O54879 Snai3-201ENSMUST00000006762 1628 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Hmgb3O54879 Tigd2-201ENSMUST00000062626 3007 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Hmgb3O54879 Nrip2-202ENSMUST00000120405 1468 ntTSL 2 BASIC11.56□□□□□ -0.56
Hmgb3O54879 Sem1-201ENSMUST00000041111 1472 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Hmgb3O54879 Commd7-202ENSMUST00000109782 1343 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
Hmgb3O54879 Prdm1-201ENSMUST00000039174 5281 ntAPPRIS ALT2 TSL 2 BASIC11.56□□□□□ -0.56
Hmgb3O54879 Spata5-209ENSMUST00000198968 2916 ntAPPRIS ALT2 TSL 1 (best) BASIC11.56□□□□□ -0.56
Hmgb3O54879 Cog7-201ENSMUST00000057576 2902 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Hmgb3O54879 Stra8-201ENSMUST00000031876 1803 ntAPPRIS P2 TSL 1 (best) BASIC11.56□□□□□ -0.56
Hmgb3O54879 Ercc5-201ENSMUST00000027214 3907 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Hmgb3O54879 Galnt6-201ENSMUST00000052069 3798 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Hmgb3O54879 Eps8l1-214ENSMUST00000171445 2975 ntAPPRIS ALT2 TSL 5 BASIC11.55□□□□□ -0.56
Hmgb3O54879 Acox3-204ENSMUST00000114238 2825 ntAPPRIS ALT2 TSL 1 (best) BASIC11.55□□□□□ -0.56
Hmgb3O54879 Bap1-201ENSMUST00000022458 3460 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Hmgb3O54879 Cpxm2-201ENSMUST00000033149 3498 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Hmgb3O54879 Iqgap3-201ENSMUST00000071812 5756 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Hmgb3O54879 1600002D24Rik-202ENSMUST00000136744 1854 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
Hmgb3O54879 Ush1c-207ENSMUST00000176371 1865 ntAPPRIS ALT2 TSL 5 BASIC11.55□□□□□ -0.56
Hmgb3O54879 Larp4-202ENSMUST00000100206 6523 ntAPPRIS P3 TSL 1 (best) BASIC11.55□□□□□ -0.56
Hmgb3O54879 Nfkbia-201ENSMUST00000021413 1578 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Hmgb3O54879 Slitrk3-201ENSMUST00000059407 3587 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Hmgb3O54879 Rnft2-202ENSMUST00000121369 4431 ntAPPRIS ALT1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Hmgb3O54879 Mast3-203ENSMUST00000211948 4251 ntAPPRIS P2 TSL 1 (best) BASIC11.55□□□□□ -0.56
Hmgb3O54879 Eya4-206ENSMUST00000219315 3100 ntAPPRIS ALT2 TSL 5 BASIC11.55□□□□□ -0.56
Hmgb3O54879 Csnk1g1-202ENSMUST00000117849 5173 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
Hmgb3O54879 0610010K14Rik-204ENSMUST00000102569 778 ntAPPRIS P3 TSL 1 (best) BASIC11.55□□□□□ -0.56
Hmgb3O54879 Dcxr-202ENSMUST00000106148 830 ntTSL 2 BASIC11.55□□□□□ -0.56
Hmgb3O54879 Lyrm1-203ENSMUST00000106517 1279 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Hmgb3O54879 Gm13464-201ENSMUST00000119418 935 ntBASIC11.55□□□□□ -0.56
Hmgb3O54879 Cenps-201ENSMUST00000030813 1110 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Hmgb3O54879 Cort-201ENSMUST00000030815 677 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Hmgb3O54879 Acat3-201ENSMUST00000043923 2123 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Hmgb3O54879 Lamtor4-201ENSMUST00000062067 877 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Hmgb3O54879 Rhox6-201ENSMUST00000006362 1010 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Hmgb3O54879 Purg-201ENSMUST00000070340 1064 ntAPPRIS P1 BASIC11.55□□□□□ -0.56
Hmgb3O54879 Slc38a7-204ENSMUST00000212270 3315 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Hmgb3O54879 Auts2-208ENSMUST00000161374 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC11.55□□□□□ -0.56
Hmgb3O54879 Dnmt3b-205ENSMUST00000103150 4070 ntAPPRIS ALT2 TSL 1 (best) BASIC11.55□□□□□ -0.56
Hmgb3O54879 Kmt5c-203ENSMUST00000108583 2177 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Hmgb3O54879 Gm17029-202ENSMUST00000146124 2899 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
Hmgb3O54879 Ltbp4-204ENSMUST00000118961 3444 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
Hmgb3O54879 Birc6-202ENSMUST00000180037 15768 ntAPPRIS P2 TSL 1 (best) BASIC11.55□□□□□ -0.56
Hmgb3O54879 Desi1-206ENSMUST00000152227 2934 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Hmgb3O54879 Ankrd34b-201ENSMUST00000061594 4013 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Hmgb3O54879 Adam11-202ENSMUST00000103081 4620 ntAPPRIS P3 TSL 1 (best) BASIC11.55□□□□□ -0.56
Hmgb3O54879 Ntng2-204ENSMUST00000102873 1593 ntAPPRIS ALT2 TSL 1 (best) BASIC11.54□□□□□ -0.56
Hmgb3O54879 Gpx3-201ENSMUST00000082430 1594 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Hmgb3O54879 Bod1l-201ENSMUST00000050556 10540 ntAPPRIS P3 TSL 5 BASIC11.54□□□□□ -0.56
Hmgb3O54879 Arap1-204ENSMUST00000107010 5147 ntAPPRIS P2 TSL 1 (best) BASIC11.54□□□□□ -0.56
Hmgb3O54879 Nfatc4-201ENSMUST00000024179 3267 ntAPPRIS P3 TSL 1 (best) BASIC11.54□□□□□ -0.56
Hmgb3O54879 Rxra-203ENSMUST00000113934 1989 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Hmgb3O54879 Acin1-216ENSMUST00000141453 2381 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Hmgb3O54879 1700022A21Rik-202ENSMUST00000182910 1448 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Hmgb3O54879 Gm4297-201ENSMUST00000119285 2579 ntAPPRIS P1 TSL 5 BASIC11.54□□□□□ -0.56
Hmgb3O54879 Zfp36l1-201ENSMUST00000021552 2990 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Hmgb3O54879 Parp10-202ENSMUST00000165738 3367 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Hmgb3O54879 Sf3a2-203ENSMUST00000148665 2213 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Hmgb3O54879 Fam131b-202ENSMUST00000095974 3992 ntAPPRIS ALT1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Hmgb3O54879 Adgrg3-201ENSMUST00000051259 2439 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Hmgb3O54879 Glis2-201ENSMUST00000014447 3619 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Hmgb3O54879 Gm8749-201ENSMUST00000117737 331 ntBASIC11.54□□□□□ -0.56
Hmgb3O54879 Fgf20-202ENSMUST00000118639 587 ntTSL 3 BASIC11.54□□□□□ -0.56
Hmgb3O54879 Ascl2-202ENSMUST00000121862 814 ntAPPRIS ALT2 BASIC11.54□□□□□ -0.56
Hmgb3O54879 Gm16194-203ENSMUST00000141239 362 ntTSL 3 BASIC11.54□□□□□ -0.56
Hmgb3O54879 Gm5577-203ENSMUST00000153372 815 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Hmgb3O54879 Gm28051-201ENSMUST00000179306 445 ntAPPRIS P1 TSL 2 BASIC11.54□□□□□ -0.56
Hmgb3O54879 Rps13-ps1-201ENSMUST00000183478 538 ntBASIC11.54□□□□□ -0.56
Hmgb3O54879 Gm37335-201ENSMUST00000192656 447 ntTSL 5 BASIC11.54□□□□□ -0.56
Hmgb3O54879 Gm37153-201ENSMUST00000193637 231 ntBASIC11.54□□□□□ -0.56
Hmgb3O54879 Nsg1-204ENSMUST00000201363 820 ntAPPRIS P1 TSL 2 BASIC11.54□□□□□ -0.56
Hmgb3O54879 Gm32031-203ENSMUST00000208993 649 ntTSL 2 BASIC11.54□□□□□ -0.56
Hmgb3O54879 Vmn2r-ps89-201ENSMUST00000209195 1010 ntBASIC11.54□□□□□ -0.56
Hmgb3O54879 CR974585.1-201ENSMUST00000221790 1263 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Hmgb3O54879 AC121577.1-201ENSMUST00000227302 707 ntBASIC11.54□□□□□ -0.56
Hmgb3O54879 Chmp2a-201ENSMUST00000005711 949 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Hmgb3O54879 Gchfr-201ENSMUST00000057454 645 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Hmgb3O54879 Gsdmcl1-201ENSMUST00000071847 1133 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Hmgb3O54879 Pcdh8-201ENSMUST00000039568 4000 ntAPPRIS P3 TSL 1 (best) BASIC11.54□□□□□ -0.56
Hmgb3O54879 Tmem59l-201ENSMUST00000045286 1491 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Hmgb3O54879 Gnas-210ENSMUST00000109095 2059 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Retrieved 100 of 76,532 protein–RNA pairs in 99.9 ms