Protein–RNA interactions for Protein: Q6P8W9

Hmgb4, High mobility group protein B4, mousemouse

Predictions only

Length 181 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb4Q6P8W9 Mbp-203ENSMUST00000075372 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
Hmgb4Q6P8W9 Ffar2-202ENSMUST00000163504 1913 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
Hmgb4Q6P8W9 Trp53bp2-201ENSMUST00000117245 4361 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
Hmgb4Q6P8W9 Nfatc4-204ENSMUST00000226357 2680 ntAPPRIS ALT2 BASIC14.68□□□□□ -0.06
Hmgb4Q6P8W9 Tpm3-201ENSMUST00000029549 2230 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Hmgb4Q6P8W9 Odf2-203ENSMUST00000113755 2305 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Hmgb4Q6P8W9 Sectm1a-203ENSMUST00000106119 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Hmgb4Q6P8W9 Ntn4-201ENSMUST00000020204 3646 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Hmgb4Q6P8W9 Jph3-201ENSMUST00000026357 3637 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Hmgb4Q6P8W9 Fntb-206ENSMUST00000137826 1442 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
Hmgb4Q6P8W9 Zscan22-204ENSMUST00000120809 1826 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Hmgb4Q6P8W9 Plekha1-201ENSMUST00000048180 3321 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Hmgb4Q6P8W9 Arhgap40-203ENSMUST00000165398 2028 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
Hmgb4Q6P8W9 Gckr-201ENSMUST00000072228 2014 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Hmgb4Q6P8W9 Alg10b-201ENSMUST00000100309 3727 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Hmgb4Q6P8W9 Gm15491-201ENSMUST00000133963 751 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Hmgb4Q6P8W9 Spata3-209ENSMUST00000152501 743 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Hmgb4Q6P8W9 Gm12352-201ENSMUST00000154452 760 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Hmgb4Q6P8W9 Gm33320-201ENSMUST00000192232 530 ntBASIC14.67□□□□□ -0.06
Hmgb4Q6P8W9 Inpp4a-213ENSMUST00000193774 1243 ntTSL 5 BASIC14.67□□□□□ -0.06
Hmgb4Q6P8W9 Gm19265-201ENSMUST00000201818 894 ntTSL 3 BASIC14.67□□□□□ -0.06
Hmgb4Q6P8W9 Gm45059-201ENSMUST00000205558 1077 ntBASIC14.67□□□□□ -0.06
Hmgb4Q6P8W9 AC156016.3-201ENSMUST00000228623 344 ntBASIC14.67□□□□□ -0.06
Hmgb4Q6P8W9 Rps11-201ENSMUST00000003521 661 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Hmgb4Q6P8W9 Slc2a6-201ENSMUST00000045702 2138 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Hmgb4Q6P8W9 Nup37-201ENSMUST00000052355 1267 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Hmgb4Q6P8W9 Rps15-201ENSMUST00000062674 572 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Hmgb4Q6P8W9 9330182L06Rik-201ENSMUST00000069538 4688 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Hmgb4Q6P8W9 Mrps21-202ENSMUST00000072587 405 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Hmgb4Q6P8W9 Kcnip2-203ENSMUST00000086993 1005 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Hmgb4Q6P8W9 Kcnip1-202ENSMUST00000101368 2322 ntTSL 2 BASIC14.67□□□□□ -0.06
Hmgb4Q6P8W9 Fermt2-201ENSMUST00000045905 3293 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Hmgb4Q6P8W9 Fgfr3-210ENSMUST00000169212 4245 ntAPPRIS P4 TSL 1 (best) BASIC14.67□□□□□ -0.06
Hmgb4Q6P8W9 Hnrnpr-204ENSMUST00000131671 2543 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Hmgb4Q6P8W9 Specc1-209ENSMUST00000201671 2523 ntTSL 5 BASIC14.67□□□□□ -0.06
Hmgb4Q6P8W9 Nfkbia-201ENSMUST00000021413 1578 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Hmgb4Q6P8W9 Gm44645-201ENSMUST00000205492 1653 ntBASIC14.67□□□□□ -0.06
Hmgb4Q6P8W9 Vopp1-202ENSMUST00000127485 2908 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Hmgb4Q6P8W9 Foxj3-201ENSMUST00000044564 4789 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
Hmgb4Q6P8W9 Tbl1xr1-203ENSMUST00000193734 8237 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Hmgb4Q6P8W9 Anks1b-231ENSMUST00000183136 2786 ntTSL 5 BASIC14.67□□□□□ -0.06
Hmgb4Q6P8W9 Tmprss9-201ENSMUST00000105333 3497 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Hmgb4Q6P8W9 Tfap2a-201ENSMUST00000021787 3487 ntAPPRIS ALT1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Hmgb4Q6P8W9 Spg20-201ENSMUST00000044116 3770 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
Hmgb4Q6P8W9 Gm45667-201ENSMUST00000210380 1316 ntBASIC14.66□□□□□ -0.06
Hmgb4Q6P8W9 Cdk19-202ENSMUST00000095743 3973 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Hmgb4Q6P8W9 Sall2-202ENSMUST00000135523 4773 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Hmgb4Q6P8W9 Zfp647-201ENSMUST00000048854 1608 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Hmgb4Q6P8W9 Gm6297-201ENSMUST00000181475 2146 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Hmgb4Q6P8W9 Gm19863-201ENSMUST00000192480 2218 ntBASIC14.66□□□□□ -0.06
Hmgb4Q6P8W9 Usp51-201ENSMUST00000095755 2204 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Hmgb4Q6P8W9 Ctps-201ENSMUST00000030381 2705 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Hmgb4Q6P8W9 Phyhip-201ENSMUST00000003561 2838 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Hmgb4Q6P8W9 Klc2-201ENSMUST00000025798 2940 ntTSL 5 BASIC14.66□□□□□ -0.06
Hmgb4Q6P8W9 Ptp4a2-207ENSMUST00000165853 3382 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
Hmgb4Q6P8W9 Stk16-201ENSMUST00000027401 2876 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Hmgb4Q6P8W9 Pld3-201ENSMUST00000117095 2282 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Hmgb4Q6P8W9 Snrpn-202ENSMUST00000098402 2076 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
Hmgb4Q6P8W9 Il2rb-202ENSMUST00000163494 1894 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Hmgb4Q6P8W9 Sirt5-207ENSMUST00000221515 1793 ntTSL 5 BASIC14.66□□□□□ -0.06
Hmgb4Q6P8W9 Gm20743-201ENSMUST00000191735 1576 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Hmgb4Q6P8W9 Dusp14-203ENSMUST00000108101 1082 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Hmgb4Q6P8W9 Gm7820-201ENSMUST00000121012 1052 ntBASIC14.66□□□□□ -0.06
Hmgb4Q6P8W9 E130201H02Rik-201ENSMUST00000123576 851 ntBASIC14.66□□□□□ -0.06
Hmgb4Q6P8W9 Pigyl-201ENSMUST00000123680 695 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
Hmgb4Q6P8W9 Pax8-208ENSMUST00000153601 1226 ntTSL 5 BASIC14.66□□□□□ -0.06
Hmgb4Q6P8W9 1700072B07Rik-201ENSMUST00000191141 445 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Hmgb4Q6P8W9 Gm37917-201ENSMUST00000194711 392 ntBASIC14.66□□□□□ -0.06
Hmgb4Q6P8W9 9230114J08Rik-201ENSMUST00000200375 350 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Hmgb4Q6P8W9 0610005C13Rik-209ENSMUST00000211209 974 ntTSL 2 BASIC14.66□□□□□ -0.06
Hmgb4Q6P8W9 Gm9908-201ENSMUST00000211534 448 ntBASIC14.66□□□□□ -0.06
Hmgb4Q6P8W9 Gm30934-201ENSMUST00000215803 815 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Hmgb4Q6P8W9 AC153937.4-201ENSMUST00000218479 661 ntTSL 3 BASIC14.66□□□□□ -0.06
Hmgb4Q6P8W9 Uqcr10-201ENSMUST00000058407 434 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Hmgb4Q6P8W9 Prr18-201ENSMUST00000069742 3407 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Hmgb4Q6P8W9 Spock1-205ENSMUST00000187852 3113 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Hmgb4Q6P8W9 Atp2b3-202ENSMUST00000088429 4483 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Hmgb4Q6P8W9 Fbxo21-206ENSMUST00000202447 3959 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
Hmgb4Q6P8W9 Ubxn11-201ENSMUST00000070246 2014 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
Hmgb4Q6P8W9 2810006K23Rik-202ENSMUST00000111477 1637 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Hmgb4Q6P8W9 Cobll1-201ENSMUST00000090896 4867 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Hmgb4Q6P8W9 Eif4g1-203ENSMUST00000115457 5440 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
Hmgb4Q6P8W9 Uba3-201ENSMUST00000089287 2257 ntAPPRIS P4 TSL 1 (best) BASIC14.66□□□□□ -0.06
Hmgb4Q6P8W9 Tmprss12-201ENSMUST00000096200 1349 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Hmgb4Q6P8W9 Erich6-201ENSMUST00000041115 2195 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
Hmgb4Q6P8W9 Mtif2-202ENSMUST00000093239 2741 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Hmgb4Q6P8W9 Zfp574-202ENSMUST00000179556 4140 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Hmgb4Q6P8W9 Arhgap10-201ENSMUST00000076316 3084 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Hmgb4Q6P8W9 Canx-205ENSMUST00000179865 4281 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Hmgb4Q6P8W9 Six3os1-211ENSMUST00000176958 2889 ntTSL 2 BASIC14.65□□□□□ -0.06
Hmgb4Q6P8W9 Fggy-203ENSMUST00000107091 1395 ntTSL 5 BASIC14.65□□□□□ -0.06
Hmgb4Q6P8W9 Mrps17-202ENSMUST00000118420 843 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
Hmgb4Q6P8W9 Gm13134-202ENSMUST00000144347 387 ntTSL 2 BASIC14.65□□□□□ -0.06
Hmgb4Q6P8W9 1600025M17Rik-202ENSMUST00000151426 547 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Hmgb4Q6P8W9 Gm12446-202ENSMUST00000152069 713 ntTSL 2 BASIC14.65□□□□□ -0.06
Hmgb4Q6P8W9 Asb1-205ENSMUST00000188081 1272 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Hmgb4Q6P8W9 Asb1-206ENSMUST00000188879 1299 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Hmgb4Q6P8W9 Gm28631-201ENSMUST00000190740 334 ntBASIC14.65□□□□□ -0.06
Hmgb4Q6P8W9 Gm31326-201ENSMUST00000191856 1048 ntBASIC14.65□□□□□ -0.06
Hmgb4Q6P8W9 Mzt2-201ENSMUST00000023351 1035 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Retrieved 100 of 76,532 protein–RNA pairs in 52 ms