Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Ccdc151-201ENSMUST00000044926 2197 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
Cux1P53564 Nfatc3-201ENSMUST00000109308 5984 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Cux1P53564 Pdhx-202ENSMUST00000111183 2078 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Cux1P53564 Ltbp4-202ENSMUST00000108369 5377 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
Cux1P53564 Gm15236-201ENSMUST00000117309 379 ntBASIC21.18■□□□□ 0.98
Cux1P53564 Prss41-202ENSMUST00000122936 1088 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Cux1P53564 D930015M05Rik-201ENSMUST00000126002 1190 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Cux1P53564 Pla2g10os-201ENSMUST00000141172 174 ntTSL 5 BASIC21.18■□□□□ 0.98
Cux1P53564 Gm4857-201ENSMUST00000192718 785 ntBASIC21.18■□□□□ 0.98
Cux1P53564 Gm45881-201ENSMUST00000210659 517 ntTSL 5 BASIC21.18■□□□□ 0.98
Cux1P53564 Tescl-201ENSMUST00000069562 855 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
Cux1P53564 Ociad2-205ENSMUST00000201908 2378 ntTSL 2 BASIC21.18■□□□□ 0.98
Cux1P53564 4933431E20Rik-209ENSMUST00000146337 1636 ntTSL 5 BASIC21.18■□□□□ 0.98
Cux1P53564 Cep135-202ENSMUST00000121979 5537 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
Cux1P53564 Fbxo42-201ENSMUST00000030757 5934 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Cux1P53564 Pcsk5-202ENSMUST00000050715 5783 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Cux1P53564 Scrn3-202ENSMUST00000112050 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Cux1P53564 Cyp2f2-201ENSMUST00000003100 1866 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Cux1P53564 Zfand3-201ENSMUST00000057897 2617 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Cux1P53564 4930524O07Rik-201ENSMUST00000161822 1050 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Cux1P53564 Lats2-202ENSMUST00000038381 933 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Cux1P53564 Plekha1-201ENSMUST00000048180 3321 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Cux1P53564 Acap3-202ENSMUST00000105584 4365 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Cux1P53564 Mettl17-206ENSMUST00000164902 1461 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
Cux1P53564 Actr1b-201ENSMUST00000043951 3248 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Cux1P53564 Wnt11-201ENSMUST00000067495 3451 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
Cux1P53564 Sbf1-205ENSMUST00000144585 6165 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Cux1P53564 Men1-203ENSMUST00000079327 2639 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Cux1P53564 Tmem80-204ENSMUST00000128906 1387 ntTSL 2 BASIC21.16■□□□□ 0.98
Cux1P53564 Dag1-201ENSMUST00000080435 4364 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Cux1P53564 Psmd8-207ENSMUST00000209034 1983 ntTSL 2 BASIC21.16■□□□□ 0.98
Cux1P53564 Tmem229b-206ENSMUST00000174697 3697 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
Cux1P53564 Slc34a3-201ENSMUST00000006638 2183 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Cux1P53564 Asb3-206ENSMUST00000203878 1813 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
Cux1P53564 Gm10605-202ENSMUST00000183019 3198 ntBASIC21.16■□□□□ 0.98
Cux1P53564 Iffo2-202ENSMUST00000123827 2036 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
Cux1P53564 Unc5a-202ENSMUST00000109994 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Cux1P53564 Gm16479-201ENSMUST00000121706 932 ntBASIC21.16■□□□□ 0.98
Cux1P53564 4933406I18Rik-201ENSMUST00000124673 905 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Cux1P53564 1700120C14Rik-202ENSMUST00000187967 391 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Cux1P53564 Gm44632-201ENSMUST00000207245 474 ntTSL 2 BASIC21.16■□□□□ 0.98
Cux1P53564 Card9-201ENSMUST00000028294 1880 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
Cux1P53564 Ugt1a6a-201ENSMUST00000014263 2265 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Cux1P53564 Ank1-207ENSMUST00000118733 8201 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Cux1P53564 Eda-202ENSMUST00000113775 5088 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Cux1P53564 Stk38-202ENSMUST00000119274 1939 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Cux1P53564 Lrrn2-201ENSMUST00000027706 3428 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Cux1P53564 Eno1b-201ENSMUST00000076155 1757 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Cux1P53564 Fam189b-203ENSMUST00000119707 2415 ntTSL 5 BASIC21.16■□□□□ 0.98
Cux1P53564 Dym-201ENSMUST00000039608 2471 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Cux1P53564 Paxbp1-202ENSMUST00000118522 3973 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Cux1P53564 Gm22323-201ENSMUST00000103832 109 ntBASIC21.15■□□□□ 0.98
Cux1P53564 Pin4-201ENSMUST00000113627 489 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Cux1P53564 Mkl2-203ENSMUST00000115809 667 ntTSL 2 BASIC21.15■□□□□ 0.98
Cux1P53564 Egfl7-211ENSMUST00000152988 723 ntTSL 2 BASIC21.15■□□□□ 0.98
Cux1P53564 Gm43714-201ENSMUST00000198351 1204 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Cux1P53564 Gm18056-201ENSMUST00000207670 568 ntBASIC21.15■□□□□ 0.98
Cux1P53564 Gm18061-201ENSMUST00000208350 562 ntBASIC21.15■□□□□ 0.98
Cux1P53564 Gm18063-201ENSMUST00000208529 568 ntBASIC21.15■□□□□ 0.98
Cux1P53564 Gm18052-201ENSMUST00000208750 559 ntBASIC21.15■□□□□ 0.98
Cux1P53564 Zfp853-201ENSMUST00000180336 1956 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
Cux1P53564 Pex1-202ENSMUST00000121291 4555 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
Cux1P53564 Usp35-202ENSMUST00000168435 3982 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
Cux1P53564 Gemin2-201ENSMUST00000021379 1588 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Cux1P53564 BC039966-201ENSMUST00000141582 1371 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Cux1P53564 Rhoj-201ENSMUST00000055390 2350 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Cux1P53564 Abcg8-202ENSMUST00000170725 2415 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Cux1P53564 Gm12503-201ENSMUST00000146576 3127 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Cux1P53564 Fars2-208ENSMUST00000224611 1750 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
Cux1P53564 Gm17029-202ENSMUST00000146124 2899 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Cux1P53564 Fam53b-205ENSMUST00000106166 1270 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
Cux1P53564 2010320O07Rik-201ENSMUST00000160935 525 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
Cux1P53564 Gm28511-201ENSMUST00000191594 450 ntTSL 3 BASIC21.14■□□□□ 0.98
Cux1P53564 Ndufb3-201ENSMUST00000027193 763 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Cux1P53564 Fam173b-201ENSMUST00000042702 1164 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.98
Cux1P53564 Alas1-201ENSMUST00000074082 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
Cux1P53564 Rhot1-203ENSMUST00000077451 3297 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.98
Cux1P53564 Msantd3-201ENSMUST00000061135 1589 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Cux1P53564 Erc1-207ENSMUST00000183911 3865 ntTSL 5 BASIC21.14■□□□□ 0.98
Cux1P53564 Spg20-201ENSMUST00000044116 3770 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.98
Cux1P53564 AC153366.2-201ENSMUST00000219461 1984 ntBASIC21.14■□□□□ 0.97
Cux1P53564 Fyn-201ENSMUST00000063091 3562 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Cux1P53564 Dcaf4-208ENSMUST00000223291 2005 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
Cux1P53564 Emilin3-202ENSMUST00000109454 3396 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
Cux1P53564 Gm38197-201ENSMUST00000192320 2122 ntBASIC21.14■□□□□ 0.97
Cux1P53564 Cdt1-201ENSMUST00000006760 2189 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Cux1P53564 Col9a2-201ENSMUST00000030372 2924 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Cux1P53564 Rasgef1b-209ENSMUST00000168092 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Cux1P53564 Ltv1-201ENSMUST00000019950 2297 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Cux1P53564 Rasgef1b-201ENSMUST00000031276 2990 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
Cux1P53564 Sh3bp5-201ENSMUST00000091903 2684 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
Cux1P53564 Cntf-201ENSMUST00000112933 1073 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Cux1P53564 Selenoh-203ENSMUST00000117299 747 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
Cux1P53564 Gm12945-201ENSMUST00000140080 674 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Cux1P53564 Ighv1-62-201ENSMUST00000193406 350 ntBASIC21.14■□□□□ 0.97
Cux1P53564 Dnajb6-210ENSMUST00000196528 1018 ntTSL 5 BASIC21.14■□□□□ 0.97
Cux1P53564 Sox2ot-205ENSMUST00000196795 754 ntTSL 3 BASIC21.14■□□□□ 0.97
Cux1P53564 Gm45865-201ENSMUST00000211815 945 ntBASIC21.14■□□□□ 0.97
Cux1P53564 Pfdn1-201ENSMUST00000025204 1077 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Cux1P53564 Nudt22-201ENSMUST00000041686 1000 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Retrieved 100 of 76,532 protein–RNA pairs in 30.1 ms