Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Ssc4d-202ENSMUST00000111150 459 ntTSL 2 BASIC18.65■□□□□ 0.58
Scn4aQ9ER60 Gm20392-201ENSMUST00000173047 701 ntBASIC18.65■□□□□ 0.58
Scn4aQ9ER60 Gm3671-201ENSMUST00000182463 1007 ntBASIC18.65■□□□□ 0.58
Scn4aQ9ER60 Gm43916-201ENSMUST00000205062 967 ntBASIC18.65■□□□□ 0.58
Scn4aQ9ER60 AC169036.1-201ENSMUST00000227994 296 ntBASIC18.65■□□□□ 0.58
Scn4aQ9ER60 Dhrs2-201ENSMUST00000022820 1268 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Scn4aQ9ER60 Dhx32-201ENSMUST00000033290 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Scn4aQ9ER60 Gm4950-201ENSMUST00000091905 618 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
Scn4aQ9ER60 Narfl-204ENSMUST00000134108 2062 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Scn4aQ9ER60 Chgb-201ENSMUST00000028826 2740 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Scn4aQ9ER60 Mvb12b-201ENSMUST00000041555 4998 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Scn4aQ9ER60 Tpm3-202ENSMUST00000118566 2190 ntTSL 5 BASIC18.65■□□□□ 0.58
Scn4aQ9ER60 Gm14451-201ENSMUST00000121581 1542 ntBASIC18.65■□□□□ 0.58
Scn4aQ9ER60 Dnajc30-201ENSMUST00000071263 1661 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
Scn4aQ9ER60 G2e3-202ENSMUST00000119211 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Scn4aQ9ER60 Pxn-213ENSMUST00000202564 2126 ntTSL 5 BASIC18.65■□□□□ 0.58
Scn4aQ9ER60 Paqr8-202ENSMUST00000167119 1472 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Scn4aQ9ER60 Eno2-216ENSMUST00000204896 1640 ntTSL 5 BASIC18.65■□□□□ 0.58
Scn4aQ9ER60 Pgd-201ENSMUST00000084124 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Scn4aQ9ER60 Apeh-206ENSMUST00000193254 2518 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Scn4aQ9ER60 Cnot9-201ENSMUST00000087215 3268 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Scn4aQ9ER60 Gm12380-201ENSMUST00000119012 544 ntBASIC18.65■□□□□ 0.58
Scn4aQ9ER60 Gm10714-201ENSMUST00000131346 874 ntTSL 2 BASIC18.65■□□□□ 0.58
Scn4aQ9ER60 P2rx4-204ENSMUST00000139631 1030 ntTSL 5 BASIC18.65■□□□□ 0.58
Scn4aQ9ER60 P2rx4-206ENSMUST00000142664 1111 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Scn4aQ9ER60 F830115B05Rik-201ENSMUST00000197638 1894 ntBASIC18.65■□□□□ 0.58
Scn4aQ9ER60 Gm43050-201ENSMUST00000201062 338 ntTSL 2 BASIC18.65■□□□□ 0.58
Scn4aQ9ER60 Gm45691-201ENSMUST00000206905 1120 ntBASIC18.65■□□□□ 0.58
Scn4aQ9ER60 Gm45433-201ENSMUST00000209386 247 ntBASIC18.65■□□□□ 0.58
Scn4aQ9ER60 AC112680.3-201ENSMUST00000215297 488 ntTSL 3 BASIC18.65■□□□□ 0.58
Scn4aQ9ER60 AC173210.1-201ENSMUST00000222341 1131 ntBASIC18.65■□□□□ 0.58
Scn4aQ9ER60 Acta1-201ENSMUST00000034453 1446 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Scn4aQ9ER60 Asb18-202ENSMUST00000097656 788 ntTSL 5 BASIC18.65■□□□□ 0.58
Scn4aQ9ER60 Cyth2-208ENSMUST00000211783 1983 ntTSL 5 BASIC18.64■□□□□ 0.58
Scn4aQ9ER60 Hdac10-202ENSMUST00000109347 1824 ntTSL 5 BASIC18.64■□□□□ 0.58
Scn4aQ9ER60 Snx14-206ENSMUST00000173039 2970 ntTSL 5 BASIC18.64■□□□□ 0.58
Scn4aQ9ER60 Mrpl58-203ENSMUST00000106539 2522 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
Scn4aQ9ER60 Gm11696-203ENSMUST00000188296 1793 ntTSL 3 BASIC18.64■□□□□ 0.58
Scn4aQ9ER60 Nphs1os-201ENSMUST00000152625 1339 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Scn4aQ9ER60 Hsd3b7-203ENSMUST00000106272 1725 ntTSL 5 BASIC18.64■□□□□ 0.57
Scn4aQ9ER60 Neu2-203ENSMUST00000164128 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Scn4aQ9ER60 Tatdn2-205ENSMUST00000204753 2645 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Scn4aQ9ER60 Ighv10-1-201ENSMUST00000103492 359 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
Scn4aQ9ER60 Gm25880-201ENSMUST00000104331 132 ntBASIC18.64■□□□□ 0.57
Scn4aQ9ER60 Rmrp-201ENSMUST00000157463 271 ntBASIC18.64■□□□□ 0.57
Scn4aQ9ER60 3110080O07Rik-201ENSMUST00000193469 1021 ntBASIC18.64■□□□□ 0.57
Scn4aQ9ER60 Tnfrsf19-203ENSMUST00000224371 1239 ntAPPRIS ALT2 BASIC18.64■□□□□ 0.57
Scn4aQ9ER60 AL732506.1-201ENSMUST00000226420 281 ntBASIC18.64■□□□□ 0.57
Scn4aQ9ER60 Nudt2-201ENSMUST00000030154 845 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Scn4aQ9ER60 Rps15-202ENSMUST00000068408 500 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Scn4aQ9ER60 Irak1-201ENSMUST00000033769 2890 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Scn4aQ9ER60 F3-201ENSMUST00000029771 1872 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Scn4aQ9ER60 Gm6159-201ENSMUST00000191249 1724 ntBASIC18.64■□□□□ 0.57
Scn4aQ9ER60 5031439G07Rik-203ENSMUST00000165743 5032 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Scn4aQ9ER60 Arf1-201ENSMUST00000061242 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Scn4aQ9ER60 Sema6d-202ENSMUST00000076335 6276 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Scn4aQ9ER60 Dclk1-215ENSMUST00000200352 1662 ntTSL 2 BASIC18.63■□□□□ 0.57
Scn4aQ9ER60 Epb41l5-201ENSMUST00000027632 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Scn4aQ9ER60 Nfe2l3-201ENSMUST00000005103 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Scn4aQ9ER60 Spint5-201ENSMUST00000103097 443 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Scn4aQ9ER60 Gm14396-201ENSMUST00000126966 548 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Scn4aQ9ER60 4930538E20Rik-202ENSMUST00000146717 497 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Scn4aQ9ER60 C230066G23Rik-201ENSMUST00000150195 650 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Scn4aQ9ER60 Gm15851-201ENSMUST00000160564 662 ntTSL 3 BASIC18.63■□□□□ 0.57
Scn4aQ9ER60 Spint5-202ENSMUST00000180193 443 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
Scn4aQ9ER60 1190007I07Rik-205ENSMUST00000185168 469 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
Scn4aQ9ER60 AC166095.1-201ENSMUST00000223731 1241 ntBASIC18.63■□□□□ 0.57
Scn4aQ9ER60 AC159103.1-201ENSMUST00000228325 429 ntBASIC18.63■□□□□ 0.57
Scn4aQ9ER60 Papd4-205ENSMUST00000225868 3081 ntAPPRIS ALT1 BASIC18.63■□□□□ 0.57
Scn4aQ9ER60 Phtf1-201ENSMUST00000055425 3060 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Scn4aQ9ER60 App-201ENSMUST00000005406 3176 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Scn4aQ9ER60 Adora2a-201ENSMUST00000105420 2596 ntAPPRIS P1 TSL 3 BASIC18.63■□□□□ 0.57
Scn4aQ9ER60 Nfib-206ENSMUST00000107248 3294 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Scn4aQ9ER60 Gm42632-201ENSMUST00000201707 2411 ntBASIC18.63■□□□□ 0.57
Scn4aQ9ER60 Cdk15-201ENSMUST00000114248 1477 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Scn4aQ9ER60 Zbtb2-201ENSMUST00000100077 3086 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Scn4aQ9ER60 Slc12a2-201ENSMUST00000115366 6520 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Scn4aQ9ER60 Fads3-201ENSMUST00000115995 3269 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Scn4aQ9ER60 Epm2a-201ENSMUST00000069106 3287 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Scn4aQ9ER60 Cnbd2-202ENSMUST00000073942 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Scn4aQ9ER60 Strada-202ENSMUST00000103072 1517 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Scn4aQ9ER60 Pde4d-203ENSMUST00000117420 1955 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Scn4aQ9ER60 Rab11fip3-202ENSMUST00000120691 5103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Scn4aQ9ER60 Ddx27-201ENSMUST00000018143 2714 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Scn4aQ9ER60 Gm12502-201ENSMUST00000120197 444 ntBASIC18.63■□□□□ 0.57
Scn4aQ9ER60 Gm12266-201ENSMUST00000120311 962 ntBASIC18.63■□□□□ 0.57
Scn4aQ9ER60 Asb17os-201ENSMUST00000156292 496 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Scn4aQ9ER60 Gm31224-201ENSMUST00000212682 513 ntTSL 3 BASIC18.63■□□□□ 0.57
Scn4aQ9ER60 Gm39460-201ENSMUST00000215728 1266 ntTSL 5 BASIC18.63■□□□□ 0.57
Scn4aQ9ER60 Olfr1230-201ENSMUST00000099787 918 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
Scn4aQ9ER60 Hps1-201ENSMUST00000026194 2647 ntAPPRIS P3 TSL 5 BASIC18.62■□□□□ 0.57
Scn4aQ9ER60 Gm15432-201ENSMUST00000121106 195 ntBASIC18.62■□□□□ 0.57
Scn4aQ9ER60 Pcbd2-202ENSMUST00000124968 546 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Scn4aQ9ER60 Qdpr-209ENSMUST00000198258 1172 ntTSL 5 BASIC18.62■□□□□ 0.57
Scn4aQ9ER60 AC126444.1-201ENSMUST00000225938 1768 ntBASIC18.62■□□□□ 0.57
Scn4aQ9ER60 A830073O21Rik-202ENSMUST00000205693 3096 ntBASIC18.62■□□□□ 0.57
Scn4aQ9ER60 Fbxl16-201ENSMUST00000045692 3478 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
Scn4aQ9ER60 Fgfr1op2-203ENSMUST00000067404 2766 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Scn4aQ9ER60 6230400D17Rik-201ENSMUST00000180987 1554 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Scn4aQ9ER60 Trav13-1-201ENSMUST00000103651 331 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 46.9 ms