Protein–RNA interactions for Protein: Q5SPW0

Vps54, Vacuolar protein sorting-associated protein 54, mousemouse

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps54Q5SPW0 Zkscan17-201ENSMUST00000013262 4064 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Vps54Q5SPW0 Ctgf-201ENSMUST00000020171 2398 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Vps54Q5SPW0 Ccdc160-201ENSMUST00000101588 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Vps54Q5SPW0 Gm17029-202ENSMUST00000146124 2899 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Vps54Q5SPW0 Rwdd2a-201ENSMUST00000034988 1355 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Vps54Q5SPW0 Rab9b-201ENSMUST00000058814 3980 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Vps54Q5SPW0 Sema5b-202ENSMUST00000120756 4646 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Vps54Q5SPW0 Espn-220ENSMUST00000207676 4618 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
Vps54Q5SPW0 Rcbtb1-202ENSMUST00000043227 3903 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Vps54Q5SPW0 A930004D18Rik-201ENSMUST00000066163 3217 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Vps54Q5SPW0 Glmn-202ENSMUST00000082121 1945 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Vps54Q5SPW0 Gm12859-201ENSMUST00000117834 427 ntBASIC16.81■□□□□ 0.28
Vps54Q5SPW0 Gm15240-201ENSMUST00000118156 720 ntBASIC16.81■□□□□ 0.28
Vps54Q5SPW0 Gm16122-201ENSMUST00000142625 1158 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Vps54Q5SPW0 Hoxd8-203ENSMUST00000151380 557 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
Vps54Q5SPW0 Iqcf1-202ENSMUST00000164965 523 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Vps54Q5SPW0 Ift27-201ENSMUST00000016781 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Vps54Q5SPW0 Tac2-202ENSMUST00000179960 852 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Vps54Q5SPW0 Ighv1-51-201ENSMUST00000192903 354 ntBASIC16.81■□□□□ 0.28
Vps54Q5SPW0 Inpp4a-213ENSMUST00000193774 1243 ntTSL 5 BASIC16.81■□□□□ 0.28
Vps54Q5SPW0 Gm33045-202ENSMUST00000210049 975 ntTSL 5 BASIC16.81■□□□□ 0.28
Vps54Q5SPW0 Gm29682-201ENSMUST00000210896 1251 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Vps54Q5SPW0 AC135669.1-201ENSMUST00000213585 412 ntBASIC16.81■□□□□ 0.28
Vps54Q5SPW0 AC139580.1-202ENSMUST00000223574 928 ntBASIC16.81■□□□□ 0.28
Vps54Q5SPW0 Tac2-201ENSMUST00000026466 678 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Vps54Q5SPW0 Cmc2-201ENSMUST00000078589 523 ntTSL 2 BASIC16.81■□□□□ 0.28
Vps54Q5SPW0 Tmem139-201ENSMUST00000095987 1147 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
Vps54Q5SPW0 Patz1-201ENSMUST00000057089 3118 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Vps54Q5SPW0 Pcdha4-202ENSMUST00000192512 5363 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Vps54Q5SPW0 Tmem181b-ps-203ENSMUST00000188746 1626 ntTSL 5 BASIC16.81■□□□□ 0.28
Vps54Q5SPW0 Hnf1a-201ENSMUST00000031535 3191 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Vps54Q5SPW0 Tmem269-202ENSMUST00000212054 1504 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Vps54Q5SPW0 Gif-201ENSMUST00000025585 1537 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Vps54Q5SPW0 Ubiad1-201ENSMUST00000051633 2992 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Vps54Q5SPW0 Il15-201ENSMUST00000034148 1908 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Vps54Q5SPW0 Adal-204ENSMUST00000110665 2356 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Vps54Q5SPW0 Sohlh2-201ENSMUST00000029369 2364 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Vps54Q5SPW0 Ppp1r15a-202ENSMUST00000167273 2809 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
Vps54Q5SPW0 Aldh3b1-201ENSMUST00000051803 1875 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Vps54Q5SPW0 Gm43056-201ENSMUST00000197865 2791 ntBASIC16.8■□□□□ 0.28
Vps54Q5SPW0 Susd2-201ENSMUST00000077610 2275 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Vps54Q5SPW0 Gigyf1-201ENSMUST00000031727 5440 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Vps54Q5SPW0 Apln-201ENSMUST00000039026 3149 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Vps54Q5SPW0 Kpna6-201ENSMUST00000003828 2195 ntAPPRIS ALT1 TSL 5 BASIC16.8■□□□□ 0.28
Vps54Q5SPW0 Mrpl53-201ENSMUST00000113938 695 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Vps54Q5SPW0 Rab4a-201ENSMUST00000117702 1080 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Vps54Q5SPW0 Gm13385-201ENSMUST00000121089 220 ntBASIC16.8■□□□□ 0.28
Vps54Q5SPW0 Sec22b-203ENSMUST00000130620 640 ntTSL 2 BASIC16.8■□□□□ 0.28
Vps54Q5SPW0 Gm15491-201ENSMUST00000133963 751 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Vps54Q5SPW0 Ercc1-203ENSMUST00000160369 1175 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Vps54Q5SPW0 Pfdn6-204ENSMUST00000174048 560 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
Vps54Q5SPW0 AL593843.1-201ENSMUST00000195891 145 ntBASIC16.8■□□□□ 0.28
Vps54Q5SPW0 Gm34866-201ENSMUST00000196146 515 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Vps54Q5SPW0 Gtpbp10-211ENSMUST00000198799 648 ntBASIC16.8■□□□□ 0.28
Vps54Q5SPW0 Efcab10-201ENSMUST00000020878 673 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Vps54Q5SPW0 Tssc1-207ENSMUST00000222407 489 ntTSL 3 BASIC16.8■□□□□ 0.28
Vps54Q5SPW0 Tmem219-201ENSMUST00000032926 941 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Vps54Q5SPW0 Ins1-201ENSMUST00000039652 1016 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Vps54Q5SPW0 Ccdc58-201ENSMUST00000099937 747 ntTSL 3 BASIC16.8■□□□□ 0.28
Vps54Q5SPW0 Syne3-201ENSMUST00000067005 5097 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Vps54Q5SPW0 Fbrs-202ENSMUST00000205432 4166 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
Vps54Q5SPW0 Sf1-204ENSMUST00000113489 2863 ntTSL 5 BASIC16.8■□□□□ 0.28
Vps54Q5SPW0 Alk-201ENSMUST00000086639 4866 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Vps54Q5SPW0 N4bp3-201ENSMUST00000001080 2367 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Vps54Q5SPW0 Myo1c-204ENSMUST00000108431 4718 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Vps54Q5SPW0 Spo11-202ENSMUST00000109125 1591 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Vps54Q5SPW0 Ptx4-201ENSMUST00000054930 1582 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Vps54Q5SPW0 Mcrs1-201ENSMUST00000041190 1915 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Vps54Q5SPW0 Naa15-201ENSMUST00000029303 6090 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Vps54Q5SPW0 Cfap157-201ENSMUST00000102813 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Vps54Q5SPW0 Nr4a2-203ENSMUST00000112629 3422 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
Vps54Q5SPW0 Cyp4x1os-201ENSMUST00000153951 2003 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Vps54Q5SPW0 Nt5e-201ENSMUST00000034992 3995 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Vps54Q5SPW0 Myh14-204ENSMUST00000207775 6499 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
Vps54Q5SPW0 Ffar2-202ENSMUST00000163504 1913 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
Vps54Q5SPW0 Gm45799-201ENSMUST00000106785 367 ntAPPRIS ALT2 TSL 3 BASIC16.79■□□□□ 0.28
Vps54Q5SPW0 Pbx2-205ENSMUST00000183827 1186 ntTSL 5 BASIC16.79■□□□□ 0.28
Vps54Q5SPW0 Gm29741-201ENSMUST00000192667 421 ntBASIC16.79■□□□□ 0.28
Vps54Q5SPW0 Tmem129-204ENSMUST00000200849 657 ntTSL 3 BASIC16.79■□□□□ 0.28
Vps54Q5SPW0 Gm42846-201ENSMUST00000201771 514 ntTSL 3 BASIC16.79■□□□□ 0.28
Vps54Q5SPW0 Rpp21-201ENSMUST00000025319 729 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Vps54Q5SPW0 Gm4559-201ENSMUST00000080669 600 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
Vps54Q5SPW0 Olfr554-201ENSMUST00000098221 954 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
Vps54Q5SPW0 Nrcam-202ENSMUST00000110748 6275 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Vps54Q5SPW0 1700034H15Rik-202ENSMUST00000139827 4354 ntTSL 5 BASIC16.79■□□□□ 0.28
Vps54Q5SPW0 Efr3b-201ENSMUST00000111178 6547 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Vps54Q5SPW0 Rai2-202ENSMUST00000112338 2165 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Vps54Q5SPW0 Clcnkb-202ENSMUST00000105788 2490 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Vps54Q5SPW0 Gm28182-201ENSMUST00000188354 2477 ntBASIC16.79■□□□□ 0.28
Vps54Q5SPW0 Dcp1b-202ENSMUST00000112777 3313 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Vps54Q5SPW0 Prickle3-203ENSMUST00000129662 2376 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
Vps54Q5SPW0 Tm9sf1-201ENSMUST00000002391 2382 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Vps54Q5SPW0 Ric8b-202ENSMUST00000095385 2909 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Vps54Q5SPW0 Slc41a3-201ENSMUST00000032177 2324 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Vps54Q5SPW0 Slc39a2-201ENSMUST00000047726 2334 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Vps54Q5SPW0 Cdc42ep1-201ENSMUST00000059619 2542 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Vps54Q5SPW0 Exosc5-206ENSMUST00000206561 1680 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Vps54Q5SPW0 Prkab2-201ENSMUST00000045743 5006 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Vps54Q5SPW0 Rbm26-201ENSMUST00000022715 3633 ntTSL 5 BASIC16.78■□□□□ 0.28
Vps54Q5SPW0 Mocs2-208ENSMUST00000166176 1855 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Retrieved 100 of 76,532 protein–RNA pairs in 57.4 ms