Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Rad18-201ENSMUST00000068487 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC10.97□□□□□ -0.65
Hoxd3P09027 Fam228b-201ENSMUST00000053458 2851 ntAPPRIS P2 TSL 1 (best) BASIC10.97□□□□□ -0.65
Hoxd3P09027 Hoxd3-203ENSMUST00000111983 2968 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Hoxd3P09027 Hlcs-205ENSMUST00000227141 4021 ntAPPRIS ALT2 BASIC10.97□□□□□ -0.65
Hoxd3P09027 Crybg1-202ENSMUST00000200401 7525 ntAPPRIS ALT2 TSL 5 BASIC10.96□□□□□ -0.65
Hoxd3P09027 Trim24-203ENSMUST00000120428 3940 ntAPPRIS ALT2 TSL 1 (best) BASIC10.96□□□□□ -0.65
Hoxd3P09027 Gng2-204ENSMUST00000160013 3826 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
Hoxd3P09027 Scube2-203ENSMUST00000106729 3563 ntAPPRIS P2 TSL 1 (best) BASIC10.96□□□□□ -0.65
Hoxd3P09027 Gm996-203ENSMUST00000188161 2925 ntAPPRIS P1 BASIC10.96□□□□□ -0.65
Hoxd3P09027 Slc18b1-206ENSMUST00000179321 2843 ntTSL 5 BASIC10.96□□□□□ -0.65
Hoxd3P09027 Celf3-201ENSMUST00000029784 2744 ntAPPRIS P2 TSL 1 (best) BASIC10.96□□□□□ -0.65
Hoxd3P09027 Asb2-201ENSMUST00000021617 2690 ntAPPRIS P2 TSL 1 (best) BASIC10.96□□□□□ -0.65
Hoxd3P09027 Fn1-211ENSMUST00000187938 7965 ntAPPRIS ALT2 TSL 1 (best) BASIC10.96□□□□□ -0.65
Hoxd3P09027 Gm4793-201ENSMUST00000067468 2616 ntTSL 2 BASIC10.96□□□□□ -0.65
Hoxd3P09027 Parp3-203ENSMUST00000123555 2495 ntAPPRIS P3 TSL 1 (best) BASIC10.96□□□□□ -0.65
Hoxd3P09027 Fen1-204ENSMUST00000156291 2373 ntAPPRIS P1 TSL 2 BASIC10.96□□□□□ -0.65
Hoxd3P09027 Rexo4-202ENSMUST00000114020 2278 ntAPPRIS P2 TSL 1 (best) BASIC10.96□□□□□ -0.65
Hoxd3P09027 F2-201ENSMUST00000028681 1988 ntAPPRIS P2 TSL 1 (best) BASIC10.96□□□□□ -0.65
Hoxd3P09027 Samhd1-202ENSMUST00000088523 1996 ntAPPRIS ALT2 TSL 5 BASIC10.96□□□□□ -0.65
Hoxd3P09027 P2rx3-202ENSMUST00000111613 1764 ntAPPRIS ALT1 TSL 5 BASIC10.96□□□□□ -0.65
Hoxd3P09027 B130055M24Rik-201ENSMUST00000144796 1778 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
Hoxd3P09027 Mcrs1-202ENSMUST00000163506 1795 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
Hoxd3P09027 Ccnh-204ENSMUST00000164127 1718 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
Hoxd3P09027 Nwd2-201ENSMUST00000159584 8534 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
Hoxd3P09027 Gm14451-201ENSMUST00000121581 1542 ntBASIC10.96□□□□□ -0.65
Hoxd3P09027 Sept1-202ENSMUST00000106314 1486 ntAPPRIS P2 TSL 1 (best) BASIC10.96□□□□□ -0.65
Hoxd3P09027 Gale-202ENSMUST00000102541 1430 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
Hoxd3P09027 Fbxo44-205ENSMUST00000151127 1403 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
Hoxd3P09027 Megf6-201ENSMUST00000030897 6851 ntAPPRIS P1 TSL 5 BASIC10.96□□□□□ -0.65
Hoxd3P09027 Ccdc69-202ENSMUST00000108880 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC10.96□□□□□ -0.65
Hoxd3P09027 Gm15957-201ENSMUST00000118893 974 ntBASIC10.96□□□□□ -0.65
Hoxd3P09027 Gm15321-201ENSMUST00000121290 288 ntBASIC10.96□□□□□ -0.65
Hoxd3P09027 4933416E03Rik-201ENSMUST00000133091 1126 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
Hoxd3P09027 2410003L11Rik-202ENSMUST00000145262 642 ntTSL 3 BASIC10.96□□□□□ -0.65
Hoxd3P09027 Tmem109-207ENSMUST00000147699 1096 ntTSL 2 BASIC10.96□□□□□ -0.65
Hoxd3P09027 2210408F21Rik-210ENSMUST00000151076 539 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
Hoxd3P09027 Pfdn6-204ENSMUST00000174048 560 ntAPPRIS P1 TSL 2 BASIC10.96□□□□□ -0.65
Hoxd3P09027 4833428L15Rik-201ENSMUST00000181230 1259 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
Hoxd3P09027 Gm29585-201ENSMUST00000185270 514 ntTSL 5 BASIC10.96□□□□□ -0.65
Hoxd3P09027 Gm29667-201ENSMUST00000190817 490 ntBASIC10.96□□□□□ -0.65
Hoxd3P09027 1700041M19Rik-202ENSMUST00000190908 1123 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
Hoxd3P09027 Gm37293-201ENSMUST00000191658 295 ntBASIC10.96□□□□□ -0.65
Hoxd3P09027 Fmc1-201ENSMUST00000019833 479 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
Hoxd3P09027 Gm7390-201ENSMUST00000212452 1216 ntBASIC10.96□□□□□ -0.65
Hoxd3P09027 Lyzl6-201ENSMUST00000021328 900 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
Hoxd3P09027 Cartpt-201ENSMUST00000022150 827 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
Hoxd3P09027 Cartpt-202ENSMUST00000224142 1238 ntAPPRIS P1 BASIC10.96□□□□□ -0.65
Hoxd3P09027 Plekha1-203ENSMUST00000120441 3777 ntAPPRIS ALT2 TSL 5 BASIC10.96□□□□□ -0.65
Hoxd3P09027 Luc7l3-201ENSMUST00000021226 3373 ntTSL 1 (best) BASIC10.96□□□□□ -0.66
Hoxd3P09027 Serinc5-201ENSMUST00000049488 5366 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.66
Hoxd3P09027 Zbtb46-201ENSMUST00000029106 5309 ntAPPRIS P1 TSL 5 BASIC10.96□□□□□ -0.66
Hoxd3P09027 Patz1-201ENSMUST00000057089 3118 ntTSL 1 (best) BASIC10.96□□□□□ -0.66
Hoxd3P09027 Gm43697-201ENSMUST00000199637 2581 ntBASIC10.96□□□□□ -0.66
Hoxd3P09027 Zfp410-201ENSMUST00000045931 2597 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.66
Hoxd3P09027 Daxx-208ENSMUST00000174541 2325 ntAPPRIS ALT2 TSL 5 BASIC10.96□□□□□ -0.66
Hoxd3P09027 Gucy2e-201ENSMUST00000021259 8331 ntAPPRIS P1 TSL 5 BASIC10.96□□□□□ -0.66
Hoxd3P09027 Fam76b-201ENSMUST00000059579 3702 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.66
Hoxd3P09027 Eef1d-204ENSMUST00000089681 2152 ntTSL 1 (best) BASIC10.96□□□□□ -0.66
Hoxd3P09027 Grik2-210ENSMUST00000220263 2085 ntTSL 1 (best) BASIC10.96□□□□□ -0.66
Hoxd3P09027 Lrp11-201ENSMUST00000019931 3386 ntAPPRIS P2 TSL 1 (best) BASIC10.96□□□□□ -0.66
Hoxd3P09027 Acot6-201ENSMUST00000056822 3388 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.66
Hoxd3P09027 Rasal3-204ENSMUST00000135618 3293 ntAPPRIS ALT2 TSL 5 BASIC10.96□□□□□ -0.66
Hoxd3P09027 Myl12a-206ENSMUST00000148960 1937 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.66
Hoxd3P09027 Hnf1a-201ENSMUST00000031535 3191 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.66
Hoxd3P09027 Gpr137-205ENSMUST00000166115 1845 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Hoxd3P09027 9330121J05Rik-201ENSMUST00000192267 3009 ntBASIC10.95□□□□□ -0.66
Hoxd3P09027 Dab1-203ENSMUST00000106830 5278 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Hoxd3P09027 Fech-201ENSMUST00000025484 2901 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Hoxd3P09027 Kcnk6-201ENSMUST00000085818 4084 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Hoxd3P09027 Map2k7-211ENSMUST00000145165 2879 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Hoxd3P09027 Pde7b-205ENSMUST00000169404 1697 ntAPPRIS ALT2 TSL 5 BASIC10.95□□□□□ -0.66
Hoxd3P09027 Gpc6-201ENSMUST00000078849 1668 ntAPPRIS P3 TSL 1 (best) BASIC10.95□□□□□ -0.66
Hoxd3P09027 Aff4-201ENSMUST00000060945 10099 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Hoxd3P09027 Tdrd12-205ENSMUST00000205407 1412 ntTSL 5 BASIC10.95□□□□□ -0.66
Hoxd3P09027 Aurkc-204ENSMUST00000208049 1401 ntAPPRIS ALT2 TSL 1 (best) BASIC10.95□□□□□ -0.66
Hoxd3P09027 Dnmt3a-205ENSMUST00000172689 2328 ntAPPRIS P3 TSL 1 (best) BASIC10.95□□□□□ -0.66
Hoxd3P09027 Pcdhga12-201ENSMUST00000044851 5080 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Hoxd3P09027 Bscl2-201ENSMUST00000086058 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC10.95□□□□□ -0.66
Hoxd3P09027 Gbgt1-203ENSMUST00000163121 1335 ntAPPRIS P1 TSL 5 BASIC10.95□□□□□ -0.66
Hoxd3P09027 Gm3139-202ENSMUST00000201138 1303 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
Hoxd3P09027 Gm3183-203ENSMUST00000202911 1303 ntAPPRIS ALT2 TSL 1 (best) BASIC10.95□□□□□ -0.66
Hoxd3P09027 Gm45667-201ENSMUST00000210380 1316 ntBASIC10.95□□□□□ -0.66
Hoxd3P09027 Slc35a2-202ENSMUST00000115660 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC10.95□□□□□ -0.66
Hoxd3P09027 Lrrc41-201ENSMUST00000030471 3065 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Hoxd3P09027 Maea-201ENSMUST00000114449 2193 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Hoxd3P09027 Rdm1-201ENSMUST00000010506 1124 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Hoxd3P09027 Ghr-203ENSMUST00000110698 1171 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
Hoxd3P09027 Gfpt1-202ENSMUST00000113655 1255 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
Hoxd3P09027 Gm7488-201ENSMUST00000117148 684 ntBASIC10.95□□□□□ -0.66
Hoxd3P09027 Gm15393-201ENSMUST00000120499 219 ntBASIC10.95□□□□□ -0.66
Hoxd3P09027 Gm13994-201ENSMUST00000137397 513 ntTSL 5 BASIC10.95□□□□□ -0.66
Hoxd3P09027 Gm12212-201ENSMUST00000141032 378 ntTSL 3 BASIC10.95□□□□□ -0.66
Hoxd3P09027 Gm11755-201ENSMUST00000144096 891 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
Hoxd3P09027 Sema6b-202ENSMUST00000167545 3847 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Hoxd3P09027 Cpsf4l-205ENSMUST00000173655 1213 ntAPPRIS P3 TSL 1 (best) BASIC10.95□□□□□ -0.66
Hoxd3P09027 Gm17344-202ENSMUST00000173980 621 ntTSL 5 BASIC10.95□□□□□ -0.66
Hoxd3P09027 Gm28942-201ENSMUST00000186334 365 ntTSL 3 BASIC10.95□□□□□ -0.66
Hoxd3P09027 Ilkap-208ENSMUST00000187306 377 ntTSL 5 BASIC10.95□□□□□ -0.66
Hoxd3P09027 Cxcl17-202ENSMUST00000200880 760 ntAPPRIS P2 TSL 1 (best) BASIC10.95□□□□□ -0.66
Hoxd3P09027 Gm44968-201ENSMUST00000207652 1171 ntTSL 5 BASIC10.95□□□□□ -0.66
Retrieved 100 of 76,532 protein–RNA pairs in 22.9 ms