Protein–RNA interactions for Protein: Q99PQ2

Trim11, E3 ubiquitin-protein ligase TRIM11, mousemouse

Predictions only

Length 467 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim11Q99PQ2 Yes1-201ENSMUST00000072311 4586 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Trim11Q99PQ2 Gpr137b-202ENSMUST00000220628 3634 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Trim11Q99PQ2 Nid2-201ENSMUST00000022340 4876 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Trim11Q99PQ2 Fam208b-201ENSMUST00000096069 8338 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Trim11Q99PQ2 Gm12020-201ENSMUST00000119030 2042 ntBASIC16.02■□□□□ 0.16
Trim11Q99PQ2 Ccne2-202ENSMUST00000108324 2908 ntAPPRIS P4 TSL 1 (best) BASIC16.02■□□□□ 0.16
Trim11Q99PQ2 Pbx2-203ENSMUST00000173328 1990 ntTSL 2 BASIC16.02■□□□□ 0.16
Trim11Q99PQ2 Adam15-204ENSMUST00000107448 2893 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
Trim11Q99PQ2 Rhbdl3-201ENSMUST00000017836 3736 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Trim11Q99PQ2 Prrxl1-203ENSMUST00000187377 1629 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Trim11Q99PQ2 Tbx3-201ENSMUST00000018748 4856 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Trim11Q99PQ2 Palld-203ENSMUST00000121493 5445 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Trim11Q99PQ2 Pcdhga12-201ENSMUST00000044851 5080 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Trim11Q99PQ2 Fam53b-204ENSMUST00000106165 1232 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Trim11Q99PQ2 Fam53b-205ENSMUST00000106166 1270 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Trim11Q99PQ2 Ern1-202ENSMUST00000106799 660 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Trim11Q99PQ2 Fis1-203ENSMUST00000111097 601 ntTSL 2 BASIC16.02■□□□□ 0.16
Trim11Q99PQ2 Cmc2-202ENSMUST00000128304 394 ntTSL 5 BASIC16.02■□□□□ 0.16
Trim11Q99PQ2 4930544D05Rik-203ENSMUST00000144960 624 ntAPPRIS P2 TSL 5 BASIC16.02■□□□□ 0.16
Trim11Q99PQ2 Gm16091-201ENSMUST00000156664 963 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Trim11Q99PQ2 Gm20481-201ENSMUST00000173680 564 ntAPPRIS P1 TSL 3 BASIC16.02■□□□□ 0.16
Trim11Q99PQ2 Gm27397-201ENSMUST00000184997 107 ntBASIC16.02■□□□□ 0.16
Trim11Q99PQ2 Fis1-201ENSMUST00000019198 786 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Trim11Q99PQ2 Cyba-202ENSMUST00000212600 638 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Trim11Q99PQ2 AC139350.3-201ENSMUST00000226151 420 ntBASIC16.02■□□□□ 0.16
Trim11Q99PQ2 Tssk3-201ENSMUST00000000421 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Trim11Q99PQ2 Gm5771-201ENSMUST00000049079 798 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Trim11Q99PQ2 Rxfp4-201ENSMUST00000063119 1245 ntAPPRIS P1 BASIC16.02■□□□□ 0.16
Trim11Q99PQ2 Zyg11b-201ENSMUST00000043616 8691 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Trim11Q99PQ2 Slc39a2-201ENSMUST00000047726 2334 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Trim11Q99PQ2 Apaf1-201ENSMUST00000020157 6577 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.15
Trim11Q99PQ2 Dnajc6-204ENSMUST00000106930 5127 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.15
Trim11Q99PQ2 Spns1-201ENSMUST00000032994 2219 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Trim11Q99PQ2 Apbb1-213ENSMUST00000189265 1429 ntTSL 5 BASIC16.02■□□□□ 0.15
Trim11Q99PQ2 Gm42769-201ENSMUST00000198576 1659 ntBASIC16.02■□□□□ 0.15
Trim11Q99PQ2 Tcf12-202ENSMUST00000183404 6299 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.15
Trim11Q99PQ2 Ccdc151-201ENSMUST00000044926 2197 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.15
Trim11Q99PQ2 Tpk1-201ENSMUST00000067888 2671 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Trim11Q99PQ2 Emilin2-201ENSMUST00000024849 3910 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Trim11Q99PQ2 Mrap2-202ENSMUST00000113149 2112 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
Trim11Q99PQ2 Setd1b-204ENSMUST00000163030 8857 ntAPPRIS P2 TSL 5 BASIC16.01■□□□□ 0.15
Trim11Q99PQ2 Cep295nl-202ENSMUST00000168100 1602 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
Trim11Q99PQ2 Efhd1-201ENSMUST00000027472 1854 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Trim11Q99PQ2 Atpaf2-201ENSMUST00000108721 1813 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Trim11Q99PQ2 Galt-201ENSMUST00000084695 1595 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Trim11Q99PQ2 Dlgap3-201ENSMUST00000046659 3884 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Trim11Q99PQ2 Zfp747-201ENSMUST00000067425 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Trim11Q99PQ2 Gm22065-201ENSMUST00000103753 110 ntBASIC16.01■□□□□ 0.15
Trim11Q99PQ2 Gm22066-201ENSMUST00000103761 110 ntBASIC16.01■□□□□ 0.15
Trim11Q99PQ2 Gm24932-201ENSMUST00000103763 110 ntBASIC16.01■□□□□ 0.15
Trim11Q99PQ2 Gm24115-201ENSMUST00000103799 110 ntBASIC16.01■□□□□ 0.15
Trim11Q99PQ2 Gm22190-201ENSMUST00000103827 110 ntBASIC16.01■□□□□ 0.15
Trim11Q99PQ2 Gm22191-201ENSMUST00000103831 110 ntBASIC16.01■□□□□ 0.15
Trim11Q99PQ2 Gm24721-201ENSMUST00000103849 110 ntBASIC16.01■□□□□ 0.15
Trim11Q99PQ2 Gm28018-201ENSMUST00000103869 110 ntBASIC16.01■□□□□ 0.15
Trim11Q99PQ2 Gm26399-201ENSMUST00000103937 110 ntBASIC16.01■□□□□ 0.15
Trim11Q99PQ2 Cnn2-202ENSMUST00000105374 926 ntTSL 5 BASIC16.01■□□□□ 0.15
Trim11Q99PQ2 Arfrp1-202ENSMUST00000108808 1133 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Trim11Q99PQ2 Gm14822-201ENSMUST00000122247 291 ntBASIC16.01■□□□□ 0.15
Trim11Q99PQ2 Nudcd2-203ENSMUST00000127382 727 ntTSL 2 BASIC16.01■□□□□ 0.15
Trim11Q99PQ2 Gm25349-201ENSMUST00000177728 110 ntBASIC16.01■□□□□ 0.15
Trim11Q99PQ2 Gm23616-201ENSMUST00000177797 110 ntBASIC16.01■□□□□ 0.15
Trim11Q99PQ2 Gm25871-201ENSMUST00000177816 110 ntBASIC16.01■□□□□ 0.15
Trim11Q99PQ2 Gm24752-201ENSMUST00000178240 110 ntBASIC16.01■□□□□ 0.15
Trim11Q99PQ2 Gm24496-201ENSMUST00000178287 110 ntBASIC16.01■□□□□ 0.15
Trim11Q99PQ2 Gm25649-201ENSMUST00000178476 110 ntBASIC16.01■□□□□ 0.15
Trim11Q99PQ2 Gm25548-201ENSMUST00000178681 110 ntBASIC16.01■□□□□ 0.15
Trim11Q99PQ2 Gm23147-201ENSMUST00000178841 110 ntBASIC16.01■□□□□ 0.15
Trim11Q99PQ2 Gm26095-201ENSMUST00000179270 110 ntBASIC16.01■□□□□ 0.15
Trim11Q99PQ2 Gm22171-201ENSMUST00000179283 110 ntBASIC16.01■□□□□ 0.15
Trim11Q99PQ2 Gm23936-201ENSMUST00000179354 110 ntBASIC16.01■□□□□ 0.15
Trim11Q99PQ2 Gm22619-201ENSMUST00000179516 110 ntBASIC16.01■□□□□ 0.15
Trim11Q99PQ2 Gm25255-201ENSMUST00000179579 110 ntBASIC16.01■□□□□ 0.15
Trim11Q99PQ2 Gm24755-201ENSMUST00000179691 110 ntBASIC16.01■□□□□ 0.15
Trim11Q99PQ2 Gm26506-201ENSMUST00000179692 110 ntBASIC16.01■□□□□ 0.15
Trim11Q99PQ2 Gm25086-201ENSMUST00000179931 110 ntBASIC16.01■□□□□ 0.15
Trim11Q99PQ2 Gm23243-201ENSMUST00000180047 110 ntBASIC16.01■□□□□ 0.15
Trim11Q99PQ2 Gm24659-201ENSMUST00000180212 110 ntBASIC16.01■□□□□ 0.15
Trim11Q99PQ2 Gm24169-201ENSMUST00000180244 110 ntBASIC16.01■□□□□ 0.15
Trim11Q99PQ2 Gm23689-201ENSMUST00000180354 110 ntBASIC16.01■□□□□ 0.15
Trim11Q99PQ2 Gm27359-201ENSMUST00000184153 110 ntBASIC16.01■□□□□ 0.15
Trim11Q99PQ2 Gm27785-201ENSMUST00000184268 110 ntBASIC16.01■□□□□ 0.15
Trim11Q99PQ2 Gm27466-201ENSMUST00000184396 110 ntBASIC16.01■□□□□ 0.15
Trim11Q99PQ2 Gm27703-201ENSMUST00000184836 110 ntBASIC16.01■□□□□ 0.15
Trim11Q99PQ2 1810026B05Rik-205ENSMUST00000184855 409 ntTSL 3 BASIC16.01■□□□□ 0.15
Trim11Q99PQ2 6030443J06Rik-204ENSMUST00000195898 786 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Trim11Q99PQ2 Gm43474-201ENSMUST00000196415 774 ntBASIC16.01■□□□□ 0.15
Trim11Q99PQ2 3110079O15Rik-201ENSMUST00000027476 478 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Trim11Q99PQ2 Pecr-202ENSMUST00000097698 932 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Trim11Q99PQ2 Plxdc1-203ENSMUST00000107565 2439 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Trim11Q99PQ2 Tpr-201ENSMUST00000119161 7480 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
Trim11Q99PQ2 Atp9b-213ENSMUST00000225980 5150 ntAPPRIS P2 BASIC16.01■□□□□ 0.15
Trim11Q99PQ2 Tspan12-202ENSMUST00000120965 2157 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Trim11Q99PQ2 Pcdha11-201ENSMUST00000115658 5359 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Trim11Q99PQ2 Pnpla2-203ENSMUST00000164016 2625 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Trim11Q99PQ2 Cldn14-204ENSMUST00000169391 1456 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
Trim11Q99PQ2 Rad17-202ENSMUST00000177848 2392 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Trim11Q99PQ2 Nxpe5-202ENSMUST00000159798 2568 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Trim11Q99PQ2 Klhdc3-201ENSMUST00000071841 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Trim11Q99PQ2 Tppp3-203ENSMUST00000177126 1396 ntAPPRIS P1 TSL 3 BASIC16■□□□□ 0.15
Retrieved 100 of 76,532 protein–RNA pairs in 43.1 ms